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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G18770
Z-value: 0.76
Transcription factors associated with AT4G18770
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18770
|
AT4G18770 | myb domain protein 98 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB98 | arTal_v1_Chr4_+_10311030_10311030 | 0.43 | 1.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7417873_7417873 Show fit | 0.97 |
AT4G12510.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr2_-_6960216_6960216 Show fit | 0.82 |
AT2G16005.1
|
MD-2-related lipid recognition domain-containing protein |
|
| arTal_v1_Chr1_-_1527360_1527360 Show fit | 0.78 |
AT1G05250.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 0.74 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr2_+_235925_235925 Show fit | 0.73 |
AT2G01520.1
|
MLP-like protein 328 |
|
| arTal_v1_Chr4_+_14762819_14762819 Show fit | 0.72 |
AT4G30170.1
|
Peroxidase family protein |
|
| arTal_v1_Chr5_-_8508957_8508957 Show fit | 0.70 |
AT5G24780.2
|
vegetative storage protein 1 |
|
| arTal_v1_Chr4_+_11917057_11917057 Show fit | 0.70 |
AT4G22666.2
AT4G22666.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_8509201_8509201 Show fit | 0.68 |
AT5G24780.1
|
vegetative storage protein 1 |
|
| arTal_v1_Chr5_+_2803833_2803957 Show fit | 0.60 |
AT5G08640.1
AT5G08640.2 |
flavonol synthase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18770
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.3 | GO:0009813 | flavonoid biosynthetic process(GO:0009813) |
| 0.0 | 1.8 | GO:0009808 | lignin metabolic process(GO:0009808) |
| 0.0 | 1.2 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.0 | 0.9 | GO:0046341 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 0.0 | 0.9 | GO:0042593 | glucose homeostasis(GO:0042593) |
| 0.0 | 0.9 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.0 | 0.8 | GO:0033238 | regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238) |
| 0.0 | 0.8 | GO:0010927 | pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029) |
| 0.1 | 0.7 | GO:0080028 | nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028) |
| 0.0 | 0.7 | GO:0010274 | hydrotropism(GO:0010274) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 0.5 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 0.4 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.0 | 0.4 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 0.4 | GO:0000145 | exocyst(GO:0000145) |
| 0.1 | 0.3 | GO:1990124 | messenger ribonucleoprotein complex(GO:1990124) |
| 0.0 | 0.3 | GO:0031428 | box C/D snoRNP complex(GO:0031428) |
| 0.0 | 0.3 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.3 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 0.2 | GO:0031080 | nuclear pore outer ring(GO:0031080) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 2.3 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.8 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.1 | 1.4 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.0 | 1.4 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.0 | 1.4 | GO:0019900 | kinase binding(GO:0019900) |
| 0.0 | 1.2 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.1 | 1.1 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.1 | 1.1 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 1.0 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.0 | 0.9 | GO:0016410 | N-acyltransferase activity(GO:0016410) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.6 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.4 | PID ECADHERIN NASCENT AJ PATHWAY | E-cadherin signaling in the nascent adherens junction |
| 0.0 | 0.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.2 | PID HDAC CLASSI PATHWAY | Signaling events mediated by HDAC Class I |
| 0.1 | 0.1 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.1 | PID REELIN PATHWAY | Reelin signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.5 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.4 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.0 | 0.4 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.2 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |
| 0.0 | 0.1 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.1 | REACTOME MRNA PROCESSING | Genes involved in mRNA Processing |
| 0.0 | 0.0 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |