GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT4G18450
|
AT4G18450 | Integrase-type DNA-binding superfamily protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AT4G18450 | arTal_v1_Chr4_-_10191252_10191252 | 0.30 | 3.0e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr5_+_15742543_15742543 Show fit | 0.79 |
AT5G39320.1
|
UDP-glucose 6-dehydrogenase family protein |
|
arTal_v1_Chr1_+_18035967_18035967 Show fit | 0.70 |
AT1G48750.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
arTal_v1_Chr5_+_4576123_4576202 Show fit | 0.61 |
AT5G14200.1
AT5G14200.3 AT5G14200.2 |
isopropylmalate dehydrogenase 1 |
|
arTal_v1_Chr2_+_9592956_9592956 Show fit | 0.59 |
AT2G22590.1
|
UDP-Glycosyltransferase superfamily protein |
|
arTal_v1_Chr5_+_25756272_25756272 Show fit | 0.58 |
AT5G64420.1
|
DNA polymerase V family |
|
arTal_v1_Chr1_+_618061_618061 Show fit | 0.54 |
AT1G02810.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
arTal_v1_Chr1_+_25018077_25018173 Show fit | 0.51 |
AT1G67035.2
AT1G67035.1 |
homeobox Hox-B3-like protein |
|
arTal_v1_Chr1_+_7404328_7404328 Show fit | 0.51 |
AT1G21140.1
|
Vacuolar iron transporter (VIT) family protein |
|
arTal_v1_Chr5_-_3728726_3728726 Show fit | 0.49 |
AT5G11590.1
|
Integrase-type DNA-binding superfamily protein |
|
arTal_v1_Chr1_+_26555705_26555705 Show fit | 0.49 |
AT1G70460.1
|
root hair specific 10 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 0.8 | GO:0006024 | aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203) |
0.0 | 0.7 | GO:0009631 | cold acclimation(GO:0009631) |
0.0 | 0.6 | GO:0009098 | leucine biosynthetic process(GO:0009098) |
0.1 | 0.5 | GO:0006121 | mitochondrial electron transport, succinate to ubiquinone(GO:0006121) |
0.1 | 0.4 | GO:0015717 | triose phosphate transport(GO:0015717) triose phosphate transmembrane transport(GO:0035436) |
0.1 | 0.4 | GO:0035247 | peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247) |
0.1 | 0.4 | GO:0001887 | selenium compound metabolic process(GO:0001887) |
0.1 | 0.4 | GO:1902292 | cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975) |
0.1 | 0.4 | GO:0090030 | regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030) |
0.1 | 0.4 | GO:0006564 | L-serine biosynthetic process(GO:0006564) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | GO:0016281 | eukaryotic translation initiation factor 4F complex(GO:0016281) |
0.0 | 0.5 | GO:0045273 | respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281) |
0.1 | 0.4 | GO:0005851 | eukaryotic translation initiation factor 2B complex(GO:0005851) |
0.0 | 0.4 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
0.0 | 0.4 | GO:0042555 | MCM complex(GO:0042555) |
0.0 | 0.4 | GO:0072686 | mitotic spindle(GO:0072686) |
0.0 | 0.3 | GO:0005750 | mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275) |
0.0 | 0.3 | GO:0034399 | nuclear periphery(GO:0034399) |
0.0 | 0.3 | GO:0005736 | DNA-directed RNA polymerase I complex(GO:0005736) |
0.0 | 0.2 | GO:0071541 | eukaryotic translation initiation factor 3 complex, eIF3m(GO:0071541) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
0.2 | 0.8 | GO:0003979 | UDP-glucose 6-dehydrogenase activity(GO:0003979) |
0.0 | 0.7 | GO:0008810 | cellulase activity(GO:0008810) |
0.2 | 0.6 | GO:0003862 | 3-isopropylmalate dehydrogenase activity(GO:0003862) |
0.0 | 0.6 | GO:0031369 | translation initiation factor binding(GO:0031369) |
0.1 | 0.5 | GO:0008177 | succinate dehydrogenase (ubiquinone) activity(GO:0008177) |
0.0 | 0.5 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
0.0 | 0.5 | GO:0008143 | poly(A) binding(GO:0008143) |
0.1 | 0.4 | GO:0015119 | hexose phosphate transmembrane transporter activity(GO:0015119) glucose-6-phosphate transmembrane transporter activity(GO:0015152) |
0.1 | 0.4 | GO:0003962 | cystathionine gamma-synthase activity(GO:0003962) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
0.0 | 0.2 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 0.1 | REACTOME PRE NOTCH EXPRESSION AND PROCESSING | Genes involved in Pre-NOTCH Expression and Processing |