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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G18170
Z-value: 1.52
Transcription factors associated with AT4G18170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G18170
|
AT4G18170 | WRKY DNA-binding protein 28 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY28 | arTal_v1_Chr4_+_10061214_10061214 | 0.64 | 1.4e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_10454591_10454593 Show fit | 1.40 |
AT2G24600.2
AT2G24600.3 AT2G24600.4 AT2G24600.1 |
Ankyrin repeat family protein |
|
| arTal_v1_Chr4_+_12137995_12138137 Show fit | 1.25 |
AT4G23180.1
AT4G23180.3 AT4G23180.2 |
cysteine-rich RLK (RECEPTOR-like protein kinase) 10 |
|
| arTal_v1_Chr4_-_12393982_12393982 Show fit | 1.22 |
AT4G23810.1
|
WRKY family transcription factor |
|
| arTal_v1_Chr3_-_18375784_18375784 Show fit | 1.14 |
AT3G49580.3
AT3G49580.2 |
response to low sulfur 1 |
|
| arTal_v1_Chr1_-_1702749_1702749 Show fit | 1.13 |
AT1G05675.1
|
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr3_+_11005638_11005638 Show fit | 1.12 |
AT3G29000.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr4_+_11934969_11934969 Show fit | 1.10 |
AT4G22710.1
|
cytochrome P450, family 706, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr4_+_418327_418391 Show fit | 1.10 |
AT4G00970.1
AT4G00970.2 |
cysteine-rich RLK (RECEPTOR-like protein kinase) 41 |
|
| arTal_v1_Chr4_+_11929359_11929359 Show fit | 1.05 |
AT4G22690.1
|
cytochrome P450, family 706, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr5_-_19807853_19807853 Show fit | 1.05 |
AT5G48850.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G18170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 12.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 7.2 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.0 | 6.4 | GO:0046777 | protein autophosphorylation(GO:0046777) |
| 0.2 | 4.6 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.6 | 4.1 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.1 | 4.0 | GO:0009817 | defense response to fungus, incompatible interaction(GO:0009817) |
| 0.2 | 3.7 | GO:0015976 | carbon utilization(GO:0015976) |
| 0.0 | 3.5 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.1 | 3.0 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.0 | 3.0 | GO:0042742 | defense response to bacterium(GO:0042742) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 39.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 6.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 6.3 | GO:0042579 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 6.0 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.0 | 3.7 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 3.5 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 2.1 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.0 | 1.7 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.1 | 1.6 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.0 | 1.6 | GO:0005802 | trans-Golgi network(GO:0005802) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 10.5 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.1 | 9.4 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 6.4 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.1 | 4.6 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 4.4 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.1 | 3.6 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.0 | 3.5 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.0 | 3.4 | GO:0008017 | microtubule binding(GO:0008017) |
| 0.1 | 3.0 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.1 | 2.9 | GO:0004683 | calmodulin-dependent protein kinase activity(GO:0004683) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.4 | 1.1 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.8 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 0.1 | 0.7 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.1 | 0.6 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.4 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.4 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.1 | 0.2 | PID TAP63 PATHWAY | Validated transcriptional targets of TAp63 isoforms |
| 0.0 | 0.2 | PID TELOMERASE PATHWAY | Regulation of Telomerase |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 1.1 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.2 | 1.0 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.3 | 0.9 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.7 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.0 | 0.7 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |
| 0.1 | 0.6 | REACTOME BILE ACID AND BILE SALT METABOLISM | Genes involved in Bile acid and bile salt metabolism |
| 0.1 | 0.6 | REACTOME L1CAM INTERACTIONS | Genes involved in L1CAM interactions |
| 0.1 | 0.6 | REACTOME GPCR LIGAND BINDING | Genes involved in GPCR ligand binding |
| 0.2 | 0.5 | REACTOME MTORC1 MEDIATED SIGNALLING | Genes involved in mTORC1-mediated signalling |