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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G17980
Z-value: 1.49
Transcription factors associated with AT4G17980
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G17980
|
AT4G17980 | NAC domain containing protein 71 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC071 | arTal_v1_Chr4_-_9980333_9980333 | 0.25 | 3.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 3.10 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 2.64 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 2.63 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 2.52 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 2.39 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr4_-_7401951_7401951 Show fit | 2.23 |
AT4G12470.1
|
azelaic acid induced 1 |
|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 2.11 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_+_20151163_20151163 Show fit | 2.05 |
AT5G49640.1
|
hypothetical protein |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 2.03 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr1_-_1248826_1248876 Show fit | 1.78 |
AT1G04570.2
AT1G04570.1 |
Major facilitator superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G17980
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.5 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 1.2 | 7.1 | GO:0009413 | response to flooding(GO:0009413) |
| 0.2 | 7.0 | GO:0070417 | cellular response to cold(GO:0070417) |
| 0.1 | 6.3 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.0 | 4.7 | GO:0006412 | translation(GO:0006412) peptide biosynthetic process(GO:0043043) |
| 0.2 | 4.0 | GO:1902074 | response to salt(GO:1902074) |
| 0.1 | 3.9 | GO:2000028 | regulation of photoperiodism, flowering(GO:2000028) |
| 0.1 | 3.9 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.1 | 3.8 | GO:0006730 | one-carbon metabolic process(GO:0006730) |
| 0.1 | 3.7 | GO:0006413 | translational initiation(GO:0006413) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 25.2 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.0 | 12.5 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 10.2 | GO:0005783 | endoplasmic reticulum(GO:0005783) |
| 0.0 | 9.1 | GO:0044437 | vacuolar part(GO:0044437) |
| 0.1 | 6.5 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 4.9 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 4.6 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 4.6 | GO:0005773 | vacuole(GO:0005773) |
| 0.0 | 4.4 | GO:0022626 | cytosolic ribosome(GO:0022626) |
| 0.0 | 4.1 | GO:0005768 | endosome(GO:0005768) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 17.9 | GO:0003700 | nucleic acid binding transcription factor activity(GO:0001071) transcription factor activity, sequence-specific DNA binding(GO:0003700) |
| 0.0 | 9.2 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.4 | 6.0 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 5.7 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.0 | 5.0 | GO:0043492 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.1 | 4.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.1 | 3.7 | GO:0015662 | ATPase activity, coupled to transmembrane movement of ions, phosphorylative mechanism(GO:0015662) |
| 0.1 | 3.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.5 | 3.1 | GO:0070547 | L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547) |
| 0.3 | 3.0 | GO:0004869 | cysteine-type endopeptidase inhibitor activity(GO:0004869) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.3 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.3 | 1.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.2 | 0.9 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.7 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
| 0.1 | 0.7 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.2 | 0.6 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.6 | PID FANCONI PATHWAY | Fanconi anemia pathway |
| 0.1 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.5 | PID ERBB1 DOWNSTREAM PATHWAY | ErbB1 downstream signaling |
| 0.1 | 0.4 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 2.2 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
| 0.1 | 2.2 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |
| 0.4 | 1.5 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.2 | 1.4 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.4 | 1.1 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.2 | 1.1 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.1 | 0.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.7 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.2 | 0.7 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
| 0.1 | 0.7 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |