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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G16150
Z-value: 1.75
Transcription factors associated with AT4G16150
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G16150
|
AT4G16150 | calmodulin-binding transcription activator 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT4G16150 | arTal_v1_Chr4_+_9148059_9148059 | -0.75 | 2.1e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_9538963_9538963 Show fit | 2.69 |
AT2G22470.1
|
arabinogalactan protein 2 |
|
| arTal_v1_Chr2_+_13677986_13677986 Show fit | 2.68 |
AT2G32210.3
AT2G32210.2 AT2G32210.1 |
cysteine-rich/transmembrane domain A-like protein |
|
| arTal_v1_Chr1_-_9649323_9649323 Show fit | 2.59 |
AT1G27730.1
|
salt tolerance zinc finger |
|
| arTal_v1_Chr4_-_7786161_7786161 Show fit | 2.47 |
AT4G13395.1
|
ROTUNDIFOLIA like 12 |
|
| arTal_v1_Chr3_-_15953346_15953346 Show fit | 2.26 |
AT3G44260.1
|
Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
|
| arTal_v1_Chr5_-_3517035_3517035 Show fit | 2.22 |
AT5G11070.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_16892702_16892702 Show fit | 2.20 |
AT3G45960.2
AT3G45960.1 |
expansin-like A3 |
|
| arTal_v1_Chr5_-_18371021_18371021 Show fit | 2.19 |
AT5G45340.2
AT5G45340.1 |
cytochrome P450, family 707, subfamily A, polypeptide 3 |
|
| arTal_v1_Chr4_-_17041131_17041131 Show fit | 2.17 |
AT4G36010.2
|
Pathogenesis-related thaumatin superfamily protein |
|
| arTal_v1_Chr5_+_5718498_5718498 Show fit | 2.15 |
AT5G17350.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G16150
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 15.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 4.2 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 3.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.6 | 2.6 | GO:0035264 | multicellular organism growth(GO:0035264) |
| 0.1 | 2.6 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.0 | 2.5 | GO:0002239 | response to oomycetes(GO:0002239) |
| 0.3 | 2.3 | GO:0000289 | nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289) |
| 0.2 | 2.3 | GO:0046513 | ceramide biosynthetic process(GO:0046513) |
| 0.1 | 2.3 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
| 0.4 | 2.2 | GO:0043290 | sesquiterpenoid catabolic process(GO:0016107) apocarotenoid catabolic process(GO:0043290) abscisic acid catabolic process(GO:0046345) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 14.6 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 3.3 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 3.0 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.8 | 2.3 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.0 | 2.2 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.1 | 1.8 | GO:0005849 | mRNA cleavage factor complex(GO:0005849) |
| 0.1 | 1.8 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.0 | 1.8 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.6 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 1.6 | GO:0099503 | secretory vesicle(GO:0099503) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.5 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.1 | 3.0 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.0 | 2.7 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.5 | 2.6 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.8 | 2.3 | GO:0045140 | inositol phosphoceramide synthase activity(GO:0045140) |
| 0.5 | 2.3 | GO:0004535 | poly(A)-specific ribonuclease activity(GO:0004535) |
| 0.1 | 2.3 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.4 | 2.2 | GO:0010295 | (+)-abscisic acid 8'-hydroxylase activity(GO:0010295) |
| 0.3 | 1.8 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.1 | 1.8 | GO:0000993 | RNA polymerase II core binding(GO:0000993) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.6 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.4 | 1.3 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.1 | 0.7 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID CMYB PATHWAY | C-MYB transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.7 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |
| 0.1 | 0.7 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.0 | 0.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |