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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G15090

Z-value: 1.63

Transcription factors associated with AT4G15090

Gene Symbol Gene ID Gene Info
AT4G15090
AT4G15090 FRS (FAR1 Related Sequences) transcription factor family

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
FAR1arTal_v1_Chr4_+_8614060_86140670.312.8e-01Click!

Activity profile of AT4G15090 motif

Sorted Z-values of AT4G15090 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_+_3923515 2.60 AT3G12320.1
AT3G12320
hypothetical protein
Chr3_+_3923969 2.57 AT3G12320.3
AT3G12320
hypothetical protein
Chr3_+_3923735 2.57 AT3G12320.2
AT3G12320
hypothetical protein
Chr1_+_3093644 2.34 AT1G09560.1
GLP5
germin-like protein 5
Chr2_+_10244745 2.19 AT2G24100.1
ASG1
ATP-dependent DNA helicase
Chr2_-_6493512 1.76 AT2G15020.1
AT2G15020
hypothetical protein
Chr1_+_18305445 1.70 AT1G49450.1
AT1G49450
Transducin/WD40 repeat-like superfamily protein
Chr5_-_8358546 1.66 AT5G24470.1
PRR5
two-component response regulator-like protein
Chr2_+_17165191 1.60 AT2G41180.1
SIB2
VQ motif-containing protein
Chr1_-_11595982 1.54 AT1G32190.2
AT1G32190.1
AT1G32190
alpha/beta-Hydrolases superfamily protein
Chr2_-_15955752 1.49 AT2G38110.1
GPAT6
glycerol-3-phosphate acyltransferase 6
Chr4_-_13752103 1.45 AT4G27520.1
ENODL2
early nodulin-like protein 2
Chr3_+_6393747 1.44 AT3G18560.1
AT3G18560
hypothetical protein
Chr1_+_29759030 1.44 AT1G79110.2
AT1G79110.3
AT1G79110.1
BRG2
zinc ion binding protein
Chr5_-_26933286 1.39 AT5G67480.1
AT5G67480.3
BT4
BTB and TAZ domain protein 4
Chr5_-_26932825 1.34 AT5G67480.2
BT4
BTB and TAZ domain protein 4
Chr4_+_17055226 1.22 AT4G36060.1
AT4G36060.3
AT4G36060.2
AT4G36060.4
bHLH11
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_4697078 1.20 AT5G14570.1
NRT2.7
high affinity nitrate transporter 2.7
Chr2_-_7496292 1.16 AT2G17230.1
EXL5
EXORDIUM like 5
Chr5_-_24185629 1.15 AT5G60050.1
AT5G60050
BTB/POZ domain-containing protein
Chr3_+_20788610 1.15 AT3G56010.1
AT3G56010
transmembrane protein
Chr5_-_24953232 1.13 AT5G62130.2
AT5G62130.3
AT5G62130.1
AT5G62130.4
AT5G62130
Per1-like family protein
Chr3_+_22514415 1.12 AT3G60930.1
AT3G60930

Chr2_-_17379059 1.07 AT2G41680.1
NTRC
NADPH-dependent thioredoxin reductase C
Chr3_+_22514027 1.04 AT3G60930.2
AT3G60930

Chr1_-_6555610 1.03 AT1G18970.1
GLP4
germin-like protein 4
Chr1_-_598657 1.00 AT1G02730.1
CSLD5
cellulose synthase-like D5
Chr5_+_17864376 1.00 AT5G44350.1
AT5G44350
ethylene-responsive nuclear protein-like protein
Chr5_-_3286347 1.00 AT5G10450.3
AT5G10450.2
AT5G10450.4
GRF6
G-box regulating factor 6
Chr3_-_4358826 0.99 AT3G13403.1
AT3G13403
Defensin-like (DEFL) family protein
Chr2_+_18682081 0.98 AT2G45310.1
GAE4
UDP-D-glucuronate 4-epimerase 4
Chr4_-_9844290 0.98 AT4G17680.3
AT4G17680.2
AT4G17680.1
AT4G17680
SBP (S-ribonuclease binding protein) family protein
Chr5_-_3286537 0.97 AT5G10450.1
GRF6
G-box regulating factor 6
Chr4_+_18126057 0.97 AT4G38850.1
SAUR15
SAUR-like auxin-responsive protein family
Chr3_+_20344785 0.97 AT3G54920.1
PMR6
Pectin lyase-like superfamily protein
Chr2_-_15151575 0.96 AT2G36080.3
AT2G36080.2
AT2G36080.4
AT2G36080.1
ABS2
AP2/B3-like transcriptional factor family protein
Chr3_+_9676982 0.96 AT3G26440.3
AT3G26440.6
AT3G26440
transmembrane protein, putative (DUF707)
Chr4_-_304508 0.95 AT4G00730.2
AT4G00730.1
ANL2
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr2_+_17367492 0.95 AT2G41660.1
MIZ1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr1_+_19031909 0.95 AT1G51340.5
AT1G51340.1
AT1G51340
MATE efflux family protein
Chr1_-_4229211 0.94 AT1G12420.1
ACR8
ACT domain repeat 8
Chr5_+_23355337 0.93 AT5G57660.1
COL5
CONSTANS-like 5
Chr5_+_17676795 0.92 AT5G43930.1
AT5G43930.3
AT5G43930.4
AT5G43930.2
AT5G43930
Transducin family protein / WD-40 repeat family protein
Chr1_+_19031674 0.92 AT1G51340.3
AT1G51340.4
AT1G51340
MATE efflux family protein
Chr2_-_15783480 0.90 AT2G37630.1
AS1
myb-like HTH transcriptional regulator family protein
Chr3_+_1230746 0.90 AT3G04570.1
AHL19
AT-hook motif nuclear-localized protein 19
Chr5_+_1767630 0.89 AT5G05870.1
UGT76C1
UDP-glucosyl transferase 76C1
Chr5_+_8037798 0.89 AT5G23850.1
AT5G23850
O-glucosyltransferase rumi-like protein (DUF821)
Chr1_+_1240294 0.88 AT1G04550.2
AT1G04550.1
IAA12
AUX/IAA transcriptional regulator family protein
Chr5_+_1765390 0.88 AT5G05860.1
UGT76C2
UDP-glucosyl transferase 76C2
Chr5_-_21763462 0.88 AT5G53570.1
AT5G53570.2
AT5G53570
Ypt/Rab-GAP domain of gyp1p superfamily protein
Chr3_+_23345754 0.87 AT3G63200.1
PLP9
PATATIN-like protein 9
Chr1_-_4228471 0.87 AT1G12420.2
ACR8
ACT domain repeat 8
Chr1_-_22096620 0.86 AT1G60010.1
AT1G60010
D-ribose-binding periplasmic protein
Chr5_+_19309227 0.85 AT5G47640.1
NF-YB2
nuclear factor Y, subunit B2
Chr1_+_29387672 0.84 AT1G78100.1
AUF1
F-box family protein
Chr1_-_4217412 0.84 AT1G12380.1
AT1G12380
hypothetical protein
Chr4_+_2660156 0.84 AT4G05150.1
AT4G05150
Octicosapeptide/Phox/Bem1p family protein
Chr3_+_15567067 0.84 AT3G43670.1
AT3G43670
Copper amine oxidase family protein
Chr4_-_17123855 0.84 AT4G36180.1
AT4G36180
Leucine-rich receptor-like protein kinase family protein
Chr5_+_1944754 0.83 AT5G06360.1
AT5G06360
Ribosomal protein S8e family protein
Chr1_+_25319804 0.83 AT1G67560.1
LOX6
PLAT/LH2 domain-containing lipoxygenase family protein
Chr4_+_15885520 0.83 AT4G32915.1
AT4G32915
glutamyl-tRNA(Gln) amidotransferase subunit C
Chr1_+_26621899 0.83 AT1G70610.1
AT1G70610.2
ABCB26
transporter associated with antigen processing protein 1
Chr3_-_4493737 0.83 AT3G13700.2
AT3G13700.1
AT3G13710.1
AT3G13700
PRA1.F4
RNA-binding (RRM/RBD/RNP motifs) family protein
prenylated RAB acceptor 1.F4
Chr1_+_28932868 0.83 AT1G76990.3
AT1G76990.2
ACR3
ACT domain repeat 3
Chr2_-_17040127 0.82 AT2G40820.2
AT2G40820.1
AT2G40820.3
AT2G40820.5
AT2G40820
stomatal closure actin-binding-like protein
Chr5_+_18537239 0.82 AT5G45700.1
AT5G45700
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_+_5047782 0.81 AT1G14687.1
HB32
homeobox protein 32
Chr3_+_18672906 0.81 AT3G50350.1
AT3G50350
membrane insertase, putative (DUF1685)
Chr1_+_29741728 0.81 AT1G79060.1
AT1G79060
TPRXL
Chr4_-_11732674 0.80 AT4G22150.1
PUX3
UBA/UBX domain protein
Chr3_-_6704312 0.80 AT3G19340.1
AT3G19340
aminopeptidase (DUF3754)
Chr1_-_4590501 0.80 AT1G13380.1
AT1G13380
sodium/hydrogen exchanger (DUF1218)
Chr5_+_17224270 0.79 AT5G42950.1
AT5G42950
GYF domain-containing protein
Chr1_+_19871116 0.77 AT1G53290.1
AT1G53290
Galactosyltransferase family protein
Chr4_+_12086898 0.77 AT4G23060.1
IQD22
IQ-domain 22
Chr3_+_18249663 0.77 AT3G49220.2
AT3G49220.3
AT3G49220.1
AT3G49220
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_-_4496800 0.77 AT3G13720.1
PRA8
PRA1 (Prenylated rab acceptor) family protein
Chr5_-_8869651 0.77 AT5G25475.3
AT5G25475.1
AT5G25475.4
AT5G25475.2
AT5G25475
AP2/B3-like transcriptional factor family protein
Chr5_+_4427783 0.76 AT5G13720.1
AT5G13720
Uncharacterized protein family (UPF0114)
Chr1_+_28932119 0.76 AT1G76990.1
AT1G76990.4
ACR3
ACT domain repeat 3
Chr1_+_27784928 0.76 AT1G73880.1
UGT89B1
UDP-glucosyl transferase 89B1
Chr1_+_28932359 0.76 AT1G76990.5
ACR3
ACT domain repeat 3
Chr1_+_24748105 0.76 AT1G66350.1
RGL1
RGA-like 1
Chr4_-_233652 0.76 AT4G00530.1
AT4G00530
UvrABC system protein A
Chr3_-_22412663 0.76 AT3G60630.1
HAM2
GRAS family transcription factor
Chr3_-_5038114 0.74 AT3G14960.1
AT3G14960
Galactosyltransferase family protein
Chr3_-_21448842 0.74 AT3G57930.2
AT3G57930.1
AT3G57930
rho GTPase-activating gacO-like protein
Chr4_-_2481590 0.74 AT4G04890.2
PDF2
protodermal factor 2
Chr2_-_292624 0.74 AT2G01660.2
AT2G01660.3
AT2G01660.1
PDLP6
plasmodesmata-located protein 6
Chr4_-_12254275 0.73 AT4G23490.1
AT4G23490
fringe-like protein (DUF604)
Chr2_+_17285731 0.72 AT2G41460.2
AT2G41460.4
ARP
apurinic endonuclease-redox protein
Chr5_+_24003888 0.71 AT5G59570.1
AT5G59570.2
BOA
Homeodomain-like superfamily protein
Chr3_+_18672102 0.71 AT3G50350.2
AT3G50350
membrane insertase, putative (DUF1685)
Chr2_+_13977881 0.71 AT2G32950.1
AT2G32950.2
COP1
Transducin/WD40 repeat-like superfamily protein
Chr1_-_10249704 0.71 AT1G29300.1
UNE1
intracellular protein transporter, putative (DUF641)
Chr1_+_18770937 0.71 AT1G50660.1
AT1G50660
actin cytoskeleton-regulatory complex pan-like protein
Chr4_+_2029855 0.71 AT4G04210.1
PUX4
plant UBX domain containing protein 4
Chr1_-_25649254 0.71 AT1G68400.1
AT1G68400
leucine-rich repeat transmembrane protein kinase family protein
Chr5_+_4156501 0.71 AT5G13100.1
AT5G13100
Gap junction beta-4 protein
Chr3_-_7709933 0.71 AT3G21890.1
BBX31
B-box type zinc finger family protein
Chr3_-_16876083 0.71 AT3G45900.1
AT3G45900
Ribonuclease P protein subunit P38-like protein
Chr2_-_16734953 0.69 AT2G40080.1
ELF4
EARLY FLOWERING-like protein (DUF1313)
Chr3_+_18522466 0.69 AT3G49950.1
AT3G49950
GRAS family transcription factor
Chr1_+_9621398 0.69 AT1G27660.1
AT1G27660
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_2482447 0.67 AT4G04890.1
PDF2
protodermal factor 2
Chr3_-_19595834 0.67 AT3G52870.1
AT3G52870
IQ calmodulin-binding motif family protein
Chr3_+_519211 0.66 AT3G02500.2
AT3G02500.1
AT3G02500.3
AT3G02500
mental retardation GTPase activating protein
Chr3_-_18494285 0.66 AT3G49870.2
AT3G49870.1
ARLA1C
ADP-ribosylation factor-like A1C
Chr5_-_17272298 0.66 AT5G43060.1
RD21B
Granulin repeat cysteine protease family protein
Chr3_+_2476306 0.65 AT3G07760.3
AT3G07760.1
AT3G07760.4
AT3G07760.2
AT3G07760.5
AT3G07760.6
AT3G07760.9
AT3G07760.7
AT3G07760.8
AT3G07760
Sterile alpha motif (SAM) domain-containing protein
Chr2_+_17285470 0.65 AT2G41460.3
AT2G41460.1
ARP
apurinic endonuclease-redox protein
Chr4_+_6901456 0.64 AT4G11350.2
AT4G11350.1
AT4G11350
transferring glycosyl group transferase (DUF604)
Chr5_-_18717031 0.64 AT5G46170.1
AT5G46170
F-box family protein
Chr5_-_4026849 0.63 AT5G12420.1
AT5G12420.2
AT5G12420
O-acyltransferase (WSD1-like) family protein
Chr1_-_5241538 0.63 AT1G15220.1
AT1G15220.2
CCMH
cytochrome c biogenesis protein family
Chr5_-_230051 0.63 AT5G01600.1
FER1
ferretin 1
Chr2_-_13185973 0.63 AT2G30980.1
SKdZeta
SHAGGY-related protein kinase dZeta
Chr3_-_19281345 0.63 AT3G51950.3
AT3G51950.1
AT3G51950.2
AT3G51950
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Chr5_+_25233881 0.63 AT5G62865.1
AT5G62865
hypothetical protein
Chr2_+_18834011 0.62 AT2G45720.3
AT2G45720.2
AT2G45720.4
AT2G45720.5
AT2G45720
ARM repeat superfamily protein
Chr2_-_10080323 0.61 AT2G23700.1
AT2G23700
Itga6 (Protein of unknown function, DUF547)
Chr5_-_19772738 0.61 AT5G48760.2
AT5G48760.1
AT5G48760
Ribosomal protein L13 family protein
Chr5_+_3831500 0.61 AT5G11890.1
EMB3135
harpin-induced protein
Chr5_-_2876576 0.61 AT5G09250.2
AT5G09250.5
AT5G09250.1
AT5G09250.3
AT5G09250.4
KIWI
ssDNA-binding transcriptional regulator
Chr5_+_5367971 0.61 AT5G16420.2
AT5G16420.3
AT5G16420.1
AT5G16420.4
AT5G16420
Pentatricopeptide repeat (PPR-like) superfamily protein
Chr1_+_5168464 0.61 AT1G15000.1
scpl50
serine carboxypeptidase-like 50
Chr5_+_880148 0.61 AT5G03510.1
AT5G03510
C2H2-type zinc finger family protein
Chr3_-_19280823 0.60 AT3G51950.4
AT3G51950
Zinc finger (CCCH-type) family protein / RNA recognition motif (RRM)-containing protein
Chr5_+_26854022 0.60 AT5G67300.1
MYBR1
myb domain protein r1
Chr1_-_23286797 0.60 AT1G62870.1
AT1G62870
hypothetical protein
Chr2_-_16612554 0.60 AT2G39805.1
AT2G39805.2
AT2G39805
Integral membrane Yip1 family protein
Chr1_+_23522449 0.60 AT1G63430.1
AT1G63430.3
AT1G63430.2
AT1G63430
Leucine-rich repeat protein kinase family protein
Chr5_+_26012775 0.60 AT5G65120.1
AT5G65120.2
AT5G65120
DNA-directed RNA polymerase subunit beta
Chr5_-_3879657 0.60 AT5G12010.1
AT5G12010
nuclease
Chr2_-_19595001 0.59 AT2G47840.1
Tic20-II
Uncharacterized conserved protein ycf60
Chr5_+_19652980 0.58 AT5G48500.1
AT5G48500
pathogenic type III effector avirulence factor Avr AvrRpt-cleavage: cleavage site protein
Chr5_+_21128085 0.58 AT5G52030.1
AT5G52030.2
AT5G52030
TraB family protein
Chr4_+_14847583 0.58 AT4G30350.1
AT4G30350
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr5_+_16779643 0.58 AT5G41920.1
AT5G41920
GRAS family transcription factor
Chr5_-_22764576 0.58 AT5G56240.1
AT5G56240.3
AT5G56240.2
AT5G56240
hapless protein
Chr3_-_18241341 0.57 AT3G49210.2
AT3G49210
O-acyltransferase (WSD1-like) family protein
Chr3_+_22791898 0.57 AT3G61590.3
AT3G61590.2
AT3G61590.1
HWS
Galactose oxidase/kelch repeat superfamily protein
Chr3_+_2958676 0.56 AT3G09650.1
HCF152
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_+_8945243 0.56 AT2G20770.1
GCL2
GCR2-like 2
Chr3_-_18241524 0.55 AT3G49210.1
AT3G49210
O-acyltransferase (WSD1-like) family protein
Chr3_+_17567126 0.55 AT3G47640.2
AT3G47640.3
PYE
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr1_+_26651840 0.55 AT1G70690.1
HWI1
Receptor-like protein kinase-related family protein
Chr1_-_28598420 0.55 AT1G76220.1
AT1G76220
hypothetical protein (DUF241)
Chr5_-_7377667 0.54 AT5G22290.2
AT5G22290.1
NAC089
NAC domain containing protein 89
Chr1_-_5858446 0.52 AT1G17140.1
AT1G17140.2
ICR1
interactor of constitutive active rops 1
Chr1_+_116784 0.52 AT1G01300.1
AT1G01300
Eukaryotic aspartyl protease family protein
Chr5_-_7405883 0.52 AT5G22360.1
VAMP714
vesicle-associated membrane protein 714
Chr1_-_16800307 0.52 AT1G44170.2
AT1G44170.1
ALDH3H1
aldehyde dehydrogenase 3H1
Chr1_+_19030998 0.51 AT1G51340.2
AT1G51340
MATE efflux family protein
Chr1_+_7734661 0.51 AT1G21980.1
PIP5K1
phosphatidylinositol-4-phosphate 5-kinase 1
Chr1_-_16798675 0.50 AT1G44170.3
ALDH3H1
aldehyde dehydrogenase 3H1
Chr3_+_7912905 0.50 AT3G22380.2
AT3G22380.3
AT3G22380.1
TIC
time for coffee
Chr5_-_5766246 0.50 AT5G17490.1
RGL3
RGA-like protein 3
Chr5_+_1592013 0.50 AT5G05380.2
AT5G05380.3
AT5G05380.4
AT5G05380.1
PRA1.B3
prenylated RAB acceptor 1.B3
Chr2_-_18873972 0.50 AT2G45850.3
AT2G45850.1
AT2G45850
AT hook motif DNA-binding family protein
Chr1_+_4989562 0.49 AT1G14580.3
AT1G14580.2
AT1G14580.1
AT1G14580
C2H2-like zinc finger protein
Chr3_+_723878 0.49 AT3G03140.1
AT3G03140
Tudor/PWWP/MBT superfamily protein
Chr2_-_12929799 0.49 AT2G30330.2
AT2G30330.1
BLOS1
GCN5L1 family protein
Chr2_-_18321696 0.49 AT2G44360.1
AT2G44360
ecotropic viral integration site protein
Chr5_+_4441858 0.48 AT5G13760.1
AT5G13760
Plasma-membrane choline transporter family protein
Chr3_+_390720 0.48 AT3G02150.1
AT3G02150.2
PTF1
plastid transcription factor 1
Chr2_+_15104716 0.47 AT2G35950.2
AT2G35950.1
EDA12
embryo sac development arrest 12
Chr1_+_25521100 0.47 AT1G68100.1
AT1G68100.2
IAR1
ZIP metal ion transporter family
Chr1_+_25230239 0.47 AT1G67340.1
AT1G67340
HCP-like superfamily protein with MYND-type zinc finger
Chr1_+_22572609 0.47 AT1G61215.1
BRD4
bromodomain 4
Chr5_-_22763923 0.46 AT5G56240.4
AT5G56240
hapless protein
Chr3_+_3758452 0.46 AT3G11900.1
AT3G11900.2
ANT1
aromatic and neutral transporter 1
Chr1_+_29345851 0.46 AT1G78040.2
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr3_-_23429231 0.46 AT3G63450.4
AT3G63450.7
AT3G63450.1
AT3G63450.6
AT3G63450.3
AT3G63450
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr2_+_12776208 0.46 AT2G29970.1
AT2G29970
Double Clp-N motif-containing P-loop nucleoside triphosphate hydrolases superfamily protein
Chr5_-_23723137 0.45 AT5G58720.3
AT5G58720.2
AT5G58720.1
AT5G58720
smr (Small MutS Related) domain-containing protein
Chr1_+_3945584 0.45 AT1G11700.1
AT1G11700
senescence regulator (Protein of unknown function, DUF584)
Chr3_+_2020164 0.45 AT3G06520.2
AT3G06520
agenet domain-containing protein
Chr5_+_26058031 0.45 AT5G65210.4
AT5G65210.2
TGA1
bZIP transcription factor family protein
Chr2_-_17040358 0.45 AT2G40820.4
AT2G40820
stomatal closure actin-binding-like protein
Chr1_+_29345662 0.45 AT1G78040.3
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr3_+_2019849 0.45 AT3G06520.1
AT3G06520
agenet domain-containing protein
Chr1_+_29344539 0.45 AT1G78040.1
AT1G78040
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_17835032 0.44 AT1G48280.1
AT1G48280
hydroxyproline-rich glycoprotein family protein
Chr1_-_5055299 0.44 AT1G14690.2
AT1G14690.1
MAP65-7
microtubule-associated protein 65-7
Chr1_-_7692459 0.44 AT1G21900.1
p24delta5
emp24/gp25L/p24 family/GOLD family protein
Chr5_+_26261136 0.44 AT5G65683.1
WAVH2
Zinc finger (C3HC4-type RING finger) family protein
Chr3_+_17567476 0.44 AT3G47640.1
PYE
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_+_6120029 0.44 AT3G17860.3
AT3G17860.2
JAZ3
jasmonate-zim-domain protein 3
Chr5_+_26057814 0.44 AT5G65210.5
AT5G65210.3
TGA1
bZIP transcription factor family protein
Chr1_+_6450585 0.44 AT1G18710.1
MYB47
myb domain protein 47
Chr5_+_26057533 0.43 AT5G65210.1
AT5G65210.6
TGA1
bZIP transcription factor family protein
Chr1_-_23539242 0.43 AT1G63470.1
AT1G63470
AT hook motif DNA-binding family protein
Chr5_+_13934108 0.43 AT5G35760.1
AT5G35760
Beta-galactosidase related protein
Chr3_+_5081780 0.43 AT3G15095.2
AT3G15095.1
AT3G15095.3
HCF243
Serine/Threonine-kinase pakA-like protein
Chr4_+_15487914 0.43 AT4G32020.1
AT4G32020
serine/arginine repetitive matrix-like protein
Chr5_-_5006882 0.42 AT5G15410.1
AT5G15410.2
DND1
Cyclic nucleotide-regulated ion channel family protein
Chr5_+_19763110 0.42 AT5G48730.1
AT5G48730
Pentatricopeptide repeat (PPR) superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G15090

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.5 GO:0031468 nuclear envelope reassembly(GO:0031468)
0.3 0.8 GO:0010541 acropetal auxin transport(GO:0010541)
0.2 0.9 GO:0016139 glycoside catabolic process(GO:0016139)
0.2 0.9 GO:0043478 pigment accumulation in response to UV light(GO:0043478) pigment accumulation in tissues in response to UV light(GO:0043479) pigment accumulation in tissues(GO:0043480) anthocyanin accumulation in tissues in response to UV light(GO:0043481)
0.2 1.1 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.2 1.0 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.2 0.6 GO:0048464 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.2 0.9 GO:0010338 leaf formation(GO:0010338)
0.1 0.7 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.1 0.7 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 1.4 GO:0033683 nucleotide-excision repair, DNA incision(GO:0033683)
0.1 3.0 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.1 1.1 GO:0071249 cellular response to nitrate(GO:0071249)
0.1 0.4 GO:0070509 calcium ion import(GO:0070509)
0.1 0.7 GO:0010018 far-red light signaling pathway(GO:0010018)
0.1 1.0 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.1 0.3 GO:1902464 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.1 0.8 GO:0006450 regulation of translational fidelity(GO:0006450)
0.1 0.2 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.1 0.5 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.1 0.7 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.1 2.4 GO:0050826 response to freezing(GO:0050826)
0.1 0.9 GO:0045824 negative regulation of innate immune response(GO:0045824)
0.1 0.5 GO:0035067 histone H3-K9 demethylation(GO:0033169) negative regulation of histone acetylation(GO:0035067) negative regulation of protein acetylation(GO:1901984) negative regulation of peptidyl-lysine acetylation(GO:2000757)
0.1 0.6 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.1 0.3 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.1 0.6 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.1 0.2 GO:0043470 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.1 0.2 GO:1902315 cell cycle DNA replication initiation(GO:1902292) nuclear cell cycle DNA replication initiation(GO:1902315) mitotic DNA replication initiation(GO:1902975)
0.1 0.4 GO:0048830 adventitious root development(GO:0048830)
0.1 0.3 GO:0048863 stem cell differentiation(GO:0048863)
0.1 0.5 GO:0006882 cellular zinc ion homeostasis(GO:0006882)
0.1 0.7 GO:0010274 hydrotropism(GO:0010274)
0.1 0.6 GO:2000144 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.0 0.8 GO:0048829 root cap development(GO:0048829)
0.0 1.5 GO:0010143 cutin biosynthetic process(GO:0010143)
0.0 0.8 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.0 2.7 GO:0042542 response to hydrogen peroxide(GO:0042542)
0.0 0.4 GO:0006670 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.0 0.4 GO:0006655 phosphatidylglycerol biosynthetic process(GO:0006655)
0.0 0.2 GO:0010481 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.0 1.7 GO:0051170 nuclear import(GO:0051170)
0.0 1.1 GO:0006506 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.0 1.0 GO:0009269 response to desiccation(GO:0009269)
0.0 0.9 GO:0009880 embryonic pattern specification(GO:0009880)
0.0 0.6 GO:0000919 cell plate assembly(GO:0000919)
0.0 0.2 GO:0007349 cellularization(GO:0007349)
0.0 0.8 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.0 0.3 GO:0009652 thigmotropism(GO:0009652)
0.0 0.2 GO:0009650 photoreactive repair(GO:0000719) UV protection(GO:0009650)
0.0 1.4 GO:0018394 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.0 0.6 GO:0006949 syncytium formation(GO:0006949)
0.0 0.2 GO:0032922 circadian regulation of gene expression(GO:0032922)
0.0 0.7 GO:0009959 negative gravitropism(GO:0009959)
0.0 0.3 GO:0016559 peroxisome fission(GO:0016559)
0.0 0.4 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.0 0.8 GO:0048574 long-day photoperiodism, flowering(GO:0048574)
0.0 0.3 GO:0060321 acceptance of pollen(GO:0060321)
0.0 0.5 GO:2000012 regulation of auxin polar transport(GO:2000012)
0.0 0.3 GO:0032544 plastid translation(GO:0032544)
0.0 0.5 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.9 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.0 0.2 GO:0009608 response to symbiont(GO:0009608) response to symbiotic fungus(GO:0009610)
0.0 0.2 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.1 GO:0006072 glycerol-3-phosphate metabolic process(GO:0006072)
0.0 0.4 GO:0010030 positive regulation of seed germination(GO:0010030)
0.0 0.1 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.3 GO:0080036 regulation of cytokinin-activated signaling pathway(GO:0080036)
0.0 0.4 GO:0007030 Golgi organization(GO:0007030)
0.0 0.1 GO:0010065 primary meristem tissue development(GO:0010065)
0.0 0.7 GO:0035195 gene silencing by miRNA(GO:0035195)
0.0 0.1 GO:0006564 L-serine biosynthetic process(GO:0006564)
0.0 2.9 GO:0009909 regulation of flower development(GO:0009909)
0.0 0.4 GO:0046470 phosphatidylcholine metabolic process(GO:0046470)
0.0 0.6 GO:0032880 regulation of protein localization(GO:0032880)
0.0 0.3 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.0 0.5 GO:0045324 late endosome to vacuole transport(GO:0045324)
0.0 0.1 GO:0031937 positive regulation of chromatin silencing(GO:0031937) regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.0 0.6 GO:0010286 heat acclimation(GO:0010286)
0.0 0.1 GO:0007142 male meiosis II(GO:0007142)
0.0 0.8 GO:0009630 gravitropism(GO:0009630)
0.0 0.1 GO:0072583 protein depolymerization(GO:0051261) clathrin-mediated endocytosis(GO:0072583)
0.0 1.6 GO:0006486 protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413)
0.0 0.2 GO:0050829 defense response to Gram-negative bacterium(GO:0050829)
0.0 1.3 GO:0007015 actin filament organization(GO:0007015)
0.0 0.1 GO:0009643 photosynthetic acclimation(GO:0009643)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.2 GO:0070505 pollen coat(GO:0070505)
0.1 1.4 GO:0016272 prefoldin complex(GO:0016272)
0.1 0.9 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.1 0.5 GO:0031082 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.1 0.3 GO:0009317 acetyl-CoA carboxylase complex(GO:0009317)
0.1 0.6 GO:0043189 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.1 0.8 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.0 0.3 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.0 0.3 GO:0070062 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.0 0.4 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.0 1.2 GO:0042644 chloroplast nucleoid(GO:0042644)
0.0 0.5 GO:0035838 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.0 0.5 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 1.4 GO:0009706 chloroplast inner membrane(GO:0009706)
0.0 0.2 GO:0042555 MCM complex(GO:0042555)
0.0 0.2 GO:0098576 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.0 0.3 GO:0005682 U5 snRNP(GO:0005682)
0.0 0.7 GO:0000152 nuclear ubiquitin ligase complex(GO:0000152)
0.0 0.3 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 0.2 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.0 0.6 GO:0005764 lysosome(GO:0005764)
0.0 0.2 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.0 0.4 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.0 1.4 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 0.3 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 1.8 GO:0046658 anchored component of plasma membrane(GO:0046658)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0008311 phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311)
0.3 0.8 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.2 0.8 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.2 1.0 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.2 1.5 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.2 0.9 GO:0003680 AT DNA binding(GO:0003680)
0.2 1.0 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.2 0.5 GO:0015173 aromatic amino acid transmembrane transporter activity(GO:0015173)
0.2 1.1 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.1 0.8 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.1 0.4 GO:0008481 sphinganine kinase activity(GO:0008481)
0.1 0.6 GO:0016724 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.1 4.2 GO:0016597 amino acid binding(GO:0016597)
0.1 2.4 GO:0051219 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.1 0.5 GO:0003785 actin monomer binding(GO:0003785)
0.1 0.8 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 1.1 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.1 0.4 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956)
0.1 0.4 GO:0004142 diacylglycerol cholinephosphotransferase activity(GO:0004142)
0.1 0.3 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.1 0.4 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.1 0.3 GO:0010313 phytochrome binding(GO:0010313)
0.1 0.3 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.1 0.6 GO:0035198 miRNA binding(GO:0035198)
0.1 0.4 GO:0043855 intracellular cyclic nucleotide activated cation channel activity(GO:0005221) cyclic nucleotide-gated ion channel activity(GO:0043855)
0.1 0.4 GO:0004605 phosphatidate cytidylyltransferase activity(GO:0004605)
0.1 0.7 GO:0030674 protein binding, bridging(GO:0030674)
0.1 0.2 GO:0080042 ADP-glucose pyrophosphohydrolase activity(GO:0080042)
0.0 0.7 GO:0051117 ATPase binding(GO:0051117)
0.0 0.5 GO:0034647 histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.0 1.9 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 1.4 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.0 0.3 GO:0003989 acetyl-CoA carboxylase activity(GO:0003989)
0.0 0.2 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 1.4 GO:0080044 quercetin 7-O-glucosyltransferase activity(GO:0080044)
0.0 0.2 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 1.0 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.0 0.2 GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)(GO:0016703)
0.0 1.1 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.4 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.8 GO:0061733 histone acetyltransferase activity(GO:0004402) peptide-lysine-N-acetyltransferase activity(GO:0061733)
0.0 0.1 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.0 0.2 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.3 GO:0061608 nuclear import signal receptor activity(GO:0061608)
0.0 0.8 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.5 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.1 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.0 0.2 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.7 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.7 GO:0036442 hydrogen-exporting ATPase activity(GO:0036442)
0.0 0.2 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.1 GO:0004751 ribose-5-phosphate isomerase activity(GO:0004751)
0.0 0.5 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.1 GO:0004559 alpha-mannosidase activity(GO:0004559)
0.0 0.4 GO:0008378 galactosyltransferase activity(GO:0008378)
0.0 0.8 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.1 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.4 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 0.2 GO:0003730 mRNA 3'-UTR binding(GO:0003730)
0.0 0.8 GO:0043130 ubiquitin binding(GO:0043130)
0.0 0.6 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.2 GO:0003688 DNA replication origin binding(GO:0003688)
0.0 0.6 GO:0004185 serine-type carboxypeptidase activity(GO:0004185)
0.0 1.2 GO:0016298 lipase activity(GO:0016298)
0.0 1.0 GO:0000989 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.6 PID MTOR 4PATHWAY mTOR signaling pathway
0.1 0.4 PID S1P S1P1 PATHWAY S1P1 pathway
0.1 0.6 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway
0.0 0.1 PID AMB2 NEUTROPHILS PATHWAY amb2 Integrin signaling
0.0 0.2 PID E2F PATHWAY E2F transcription factor network

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS Genes involved in Sphingolipid de novo biosynthesis
0.1 0.4 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.0 0.2 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.0 0.3 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex