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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G15090
Z-value: 1.63
Transcription factors associated with AT4G15090
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G15090
|
AT4G15090 | FRS (FAR1 Related Sequences) transcription factor family |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| FAR1 | arTal_v1_Chr4_+_8614060_8614067 | 0.31 | 2.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_3923515_3923515 Show fit | 2.60 |
AT3G12320.1
|
hypothetical protein |
|
| arTal_v1_Chr3_+_3923969_3923969 Show fit | 2.57 |
AT3G12320.3
|
hypothetical protein |
|
| arTal_v1_Chr3_+_3923735_3923735 Show fit | 2.57 |
AT3G12320.2
|
hypothetical protein |
|
| arTal_v1_Chr1_+_3093644_3093644 Show fit | 2.34 |
AT1G09560.1
|
germin-like protein 5 |
|
| arTal_v1_Chr2_+_10244745_10244745 Show fit | 2.19 |
AT2G24100.1
|
ATP-dependent DNA helicase |
|
| arTal_v1_Chr2_-_6493512_6493512 Show fit | 1.76 |
AT2G15020.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_18305445_18305445 Show fit | 1.70 |
AT1G49450.1
|
Transducin/WD40 repeat-like superfamily protein |
|
| arTal_v1_Chr5_-_8358546_8358546 Show fit | 1.66 |
AT5G24470.1
|
two-component response regulator-like protein |
|
| arTal_v1_Chr2_+_17165191_17165191 Show fit | 1.60 |
AT2G41180.1
|
VQ motif-containing protein |
|
| arTal_v1_Chr1_-_11595982_11596056 Show fit | 1.54 |
AT1G32190.2
AT1G32190.1 |
alpha/beta-Hydrolases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G15090
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.0 | GO:2000033 | regulation of seed dormancy process(GO:2000033) |
| 0.0 | 2.9 | GO:0009909 | regulation of flower development(GO:0009909) |
| 0.0 | 2.7 | GO:0042542 | response to hydrogen peroxide(GO:0042542) |
| 0.1 | 2.4 | GO:0050826 | response to freezing(GO:0050826) |
| 0.0 | 1.7 | GO:0051170 | nuclear import(GO:0051170) |
| 0.0 | 1.6 | GO:0006486 | protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413) |
| 0.4 | 1.5 | GO:0031468 | nuclear envelope reassembly(GO:0031468) |
| 0.0 | 1.5 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.1 | 1.4 | GO:0033683 | nucleotide-excision repair, DNA incision(GO:0033683) |
| 0.0 | 1.4 | GO:0018394 | internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.8 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 1.4 | GO:0016272 | prefoldin complex(GO:0016272) |
| 0.0 | 1.4 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
| 0.0 | 1.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.3 | 1.2 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 1.2 | GO:0042644 | chloroplast nucleoid(GO:0042644) |
| 0.1 | 0.9 | GO:0032541 | cortical endoplasmic reticulum(GO:0032541) |
| 0.1 | 0.8 | GO:0030687 | preribosome, large subunit precursor(GO:0030687) |
| 0.0 | 0.7 | GO:0000152 | nuclear ubiquitin ligase complex(GO:0000152) |
| 0.1 | 0.6 | GO:0043189 | NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.2 | GO:0016597 | amino acid binding(GO:0016597) |
| 0.1 | 2.4 | GO:0051219 | protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219) |
| 0.0 | 1.9 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.2 | 1.5 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.5 | 1.4 | GO:0008311 | phosphodiesterase I activity(GO:0004528) double-stranded DNA 3'-5' exodeoxyribonuclease activity(GO:0008311) |
| 0.0 | 1.4 | GO:0044183 | protein binding involved in protein folding(GO:0044183) |
| 0.0 | 1.4 | GO:0080044 | quercetin 7-O-glucosyltransferase activity(GO:0080044) |
| 0.0 | 1.2 | GO:0016298 | lipase activity(GO:0016298) |
| 0.2 | 1.1 | GO:0004791 | thioredoxin-disulfide reductase activity(GO:0004791) |
| 0.1 | 1.1 | GO:0015112 | nitrate transmembrane transporter activity(GO:0015112) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.6 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
| 0.1 | 0.4 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.1 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.3 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.0 | 0.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |