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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G14770
Z-value: 1.49
Transcription factors associated with AT4G14770
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G14770
|
AT4G14770 | TESMIN/TSO1-like CXC 2 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCX2 | arTal_v1_Chr4_-_8484330_8484330 | -0.18 | 5.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_20458952_20459006 Show fit | 1.69 |
AT1G54870.2
AT1G54870.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr1_-_21057577_21057577 Show fit | 1.66 |
AT1G56240.1
|
phloem protein 2-B13 |
|
| arTal_v1_Chr5_-_17962276_17962276 Show fit | 1.63 |
AT5G44568.1
|
transmembrane protein |
|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 1.60 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
|
| arTal_v1_Chr4_-_13317640_13317640 Show fit | 1.51 |
AT4G26320.1
|
arabinogalactan protein 13 |
|
| arTal_v1_Chr1_+_6697874_6697874 Show fit | 1.47 |
AT1G19380.1
|
sugar, putative (DUF1195) |
|
| arTal_v1_Chr5_-_16174783_16174783 Show fit | 1.47 |
AT5G40420.1
|
oleosin 2 |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 1.44 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 1.42 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr1_-_20648891_20648891 Show fit | 1.35 |
AT1G55330.1
|
arabinogalactan protein 21 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G14770
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 5.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 4.5 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.0 | 4.0 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 3.2 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 2.4 | GO:0006032 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.4 | 2.1 | GO:0070981 | cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982) |
| 0.1 | 2.0 | GO:0030091 | protein repair(GO:0030091) |
| 0.5 | 1.8 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
| 0.2 | 1.7 | GO:0045487 | diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487) |
| 0.0 | 1.7 | GO:0006869 | lipid transport(GO:0006869) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 11.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 8.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 7.1 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 2.6 | GO:0042995 | cell projection(GO:0042995) |
| 0.1 | 2.0 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.6 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.5 | 1.4 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 1.4 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 1.2 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.1 | 1.1 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.2 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 3.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.1 | 2.7 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.1 | 2.5 | GO:0005179 | hormone activity(GO:0005179) |
| 0.0 | 2.5 | GO:0030246 | carbohydrate binding(GO:0030246) |
| 0.2 | 2.4 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.0 | 2.2 | GO:0033612 | receptor serine/threonine kinase binding(GO:0033612) |
| 0.3 | 2.1 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
| 0.1 | 2.1 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.0 | 2.1 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.2 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.3 | 1.0 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.6 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.2 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.1 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.8 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.6 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.5 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.1 | 0.4 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.1 | 0.4 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.1 | 0.4 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.3 | REACTOME MEIOSIS | Genes involved in Meiosis |
| 0.1 | 0.2 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.1 | 0.2 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |