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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G11660
Z-value: 0.77
Transcription factors associated with AT4G11660
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G11660
|
AT4G11660 | winged-helix DNA-binding transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT-HSFB2B | arTal_v1_Chr4_+_7042354_7042354 | -0.04 | 8.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_3783930_3783930 Show fit | 1.01 |
AT5G11740.1
|
arabinogalactan protein 15 |
|
| arTal_v1_Chr4_-_14542565_14542565 Show fit | 0.77 |
AT4G29690.1
|
Alkaline-phosphatase-like family protein |
|
| arTal_v1_Chr3_-_2905931_2905947 Show fit | 0.75 |
AT3G09440.4
AT3G09440.2 AT3G09440.1 |
Heat shock protein 70 (Hsp 70) family protein |
|
| arTal_v1_Chr3_-_2905729_2905729 Show fit | 0.75 |
AT3G09440.3
|
Heat shock protein 70 (Hsp 70) family protein |
|
| arTal_v1_Chr2_+_15445294_15445294 Show fit | 0.74 |
AT2G36830.1
|
gamma tonoplast intrinsic protein |
|
| arTal_v1_Chr4_+_13275200_13275200 Show fit | 0.73 |
AT4G26200.1
|
1-amino-cyclopropane-1-carboxylate synthase 7 |
|
| arTal_v1_Chr2_+_11135624_11135634 Show fit | 0.70 |
AT2G26150.2
AT2G26150.1 AT2G26150.4 AT2G26150.3 |
heat shock transcription factor A2 |
|
| arTal_v1_Chr4_+_15230008_15230008 Show fit | 0.68 |
AT4G31380.1
|
flowering-promoting factor-like protein |
|
| arTal_v1_Chr5_-_552827_552827 Show fit | 0.66 |
AT5G02490.1
|
Heat shock protein 70 (Hsp 70) family protein |
|
| arTal_v1_Chr3_+_21932627_21932712 Show fit | 0.66 |
AT3G59350.4
AT3G59350.5 AT3G59350.3 |
Protein kinase superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G11660
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.0 | GO:0034620 | cellular response to unfolded protein(GO:0034620) |
| 0.0 | 1.0 | GO:0042335 | cuticle development(GO:0042335) |
| 0.0 | 0.9 | GO:0009692 | ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674) |
| 0.2 | 0.7 | GO:0015840 | urea transport(GO:0015840) |
| 0.0 | 0.7 | GO:0008643 | carbohydrate transport(GO:0008643) |
| 0.1 | 0.6 | GO:0008615 | pyridoxine biosynthetic process(GO:0008615) |
| 0.1 | 0.6 | GO:0046247 | carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247) |
| 0.0 | 0.6 | GO:0071577 | zinc II ion transmembrane transport(GO:0071577) |
| 0.1 | 0.5 | GO:0051574 | positive regulation of histone H3-K9 methylation(GO:0051574) |
| 0.1 | 0.5 | GO:1990019 | protein storage vacuole organization(GO:1990019) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.5 | GO:0016363 | nuclear matrix(GO:0016363) |
| 0.0 | 1.3 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 0.7 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 0.7 | GO:0005788 | endoplasmic reticulum lumen(GO:0005788) |
| 0.1 | 0.7 | GO:0030131 | clathrin adaptor complex(GO:0030131) |
| 0.0 | 0.6 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 0.5 | GO:0019897 | extrinsic component of plasma membrane(GO:0019897) |
| 0.0 | 0.5 | GO:0000145 | exocyst(GO:0000145) |
| 0.0 | 0.4 | GO:0031209 | SCAR complex(GO:0031209) |
| 0.0 | 0.4 | GO:0031355 | intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.9 | GO:0004715 | non-membrane spanning protein tyrosine kinase activity(GO:0004715) |
| 0.1 | 1.5 | GO:0002020 | protease binding(GO:0002020) |
| 0.0 | 1.1 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 0.9 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.2 | 0.8 | GO:0036218 | dTTP diphosphatase activity(GO:0036218) |
| 0.0 | 0.8 | GO:0051787 | misfolded protein binding(GO:0051787) |
| 0.2 | 0.7 | GO:0015204 | urea transmembrane transporter activity(GO:0015204) |
| 0.0 | 0.7 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 0.7 | GO:0015293 | symporter activity(GO:0015293) |
| 0.1 | 0.6 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.1 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.5 | REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN | Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen |
| 0.1 | 0.3 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.1 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.0 | 0.1 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |