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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G11660

Z-value: 0.77

Transcription factors associated with AT4G11660

Gene Symbol Gene ID Gene Info
AT4G11660
AT4G11660 winged-helix DNA-binding transcription factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
AT-HSFB2BarTal_v1_Chr4_+_7042354_7042354-0.048.9e-01Click!

Activity profile of AT4G11660 motif

Sorted Z-values of AT4G11660 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_3783930 1.01 AT5G11740.1
AGP15
arabinogalactan protein 15
Chr4_-_14542565 0.77 AT4G29690.1
AT4G29690
Alkaline-phosphatase-like family protein
Chr3_-_2905931 0.75 AT3G09440.4
AT3G09440.2
AT3G09440.1
AT3G09440
Heat shock protein 70 (Hsp 70) family protein
Chr3_-_2905729 0.75 AT3G09440.3
AT3G09440
Heat shock protein 70 (Hsp 70) family protein
Chr2_+_15445294 0.74 AT2G36830.1
GAMMA-TIP
gamma tonoplast intrinsic protein
Chr4_+_13275200 0.73 AT4G26200.1
ACS7
1-amino-cyclopropane-1-carboxylate synthase 7
Chr2_+_11135624 0.70 AT2G26150.2
AT2G26150.1
AT2G26150.4
AT2G26150.3
HSFA2
heat shock transcription factor A2
Chr4_+_15230008 0.68 AT4G31380.1
FLP1
flowering-promoting factor-like protein
Chr5_-_552827 0.66 AT5G02490.1
Hsp70-2
Heat shock protein 70 (Hsp 70) family protein
Chr3_+_21932627 0.66 AT3G59350.4
AT3G59350.5
AT3G59350.3
AT3G59350
Protein kinase superfamily protein
Chr3_+_21932337 0.65 AT3G59350.2
AT3G59350.1
AT3G59350
Protein kinase superfamily protein
Chr1_+_6728747 0.64 AT1G19440.1
KCS4
3-ketoacyl-CoA synthase 4
Chr4_+_13809779 0.63 AT4G27652.1
AT4G27652
hypothetical protein
Chr3_+_21932971 0.59 AT3G59350.6
AT3G59350
Protein kinase superfamily protein
Chr1_+_8709941 0.59 AT1G24580.1
AT1G24580
RING/U-box superfamily protein
Chr2_-_14740146 0.56 AT2G34930.1
AT2G34930
disease resistance family protein / LRR family protein
Chr3_-_4834015 0.56 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
Chr3_-_5445329 0.56 AT3G16050.1
PDX1.2
pyridoxine biosynthesis 1.2
Chr2_+_6404131 0.55 AT2G14900.1
AT2G14900
Gibberellin-regulated family protein
Chr1_+_29135904 0.55 AT1G77530.1
AT1G77530.2
AT1G77530
O-methyltransferase family protein
Chr5_+_5935038 0.54 AT5G17920.1
AT5G17920.2
ATMS1
Cobalamin-independent synthase family protein
Chr1_+_22031343 0.54 AT1G59860.1
AT1G59860
HSP20-like chaperones superfamily protein
Chr5_+_16768935 0.52 AT5G41900.1
AT5G41900
alpha/beta-Hydrolases superfamily protein
Chr5_+_26421610 0.52 AT5G66070.1
AT5G66070.3
AT5G66070.4
AT5G66070.2
AT5G66070.5
AT5G66070
RING/U-box superfamily protein
Chr3_-_980562 0.51 AT3G03830.1
SAUR28
SAUR-like auxin-responsive protein family
Chr1_+_29130375 0.51 AT1G77520.1
AT1G77520
O-methyltransferase family protein
Chr2_+_12523276 0.50 AT2G29125.1
RTFL2
ROTUNDIFOLIA like 2
Chr5_+_3550300 0.50 AT5G11160.1
AT5G11160.2
APT5
adenine phosphoribosyltransferase 5
Chr3_-_18442198 0.49 AT3G49720.2
AT3G49720.3
AT3G49720.1
AT3G49720
transmembrane protein
Chr3_-_314120 0.47 AT3G01900.1
CYP94B2
cytochrome P450, family 94, subfamily B, polypeptide 2
Chr5_-_2655732 0.46 AT5G08250.1
AT5G08250.2
AT5G08250
Cytochrome P450 superfamily protein
Chr3_+_21893812 0.45 AT3G59220.1
PRN
pirin
Chr1_-_28233134 0.44 AT1G75220.1
ERDL6
Major facilitator superfamily protein
Chr5_-_3883111 0.44 AT5G12020.1
HSP17.6II
17.6 kDa class II heat shock protein
Chr2_-_96863 0.44 AT2G01140.1
PDE345
Aldolase superfamily protein
Chr4_+_9157471 0.43 AT4G16160.2
AT4G16160.1
ATOEP16-2
Mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein
Chr5_-_22024658 0.41 AT5G54240.1
AT5G54240
membrane lipoprotein lipid attachment site-like protein, putative (DUF1223)
Chr1_-_28691659 0.40 AT1G76470.1
AT1G76470
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_8151907 0.38 AT5G24105.1
AGP41
arabinogalactan protein 41
Chr1_+_27283628 0.38 AT1G72470.1
EXO70D1
exocyst subunit exo70 family protein D1
Chr4_-_17339077 0.37 AT4G36791.1
AT4G36791
hypothetical protein
Chr1_-_3667139 0.36 AT1G10970.2
ZIP4
zinc transporter
Chr3_+_2737297 0.36 AT3G08970.1
ATERDJ3A
DNAJ heat shock N-terminal domain-containing protein
Chr1_-_25271904 0.36 AT1G67460.2
AT1G67460.1
AT1G67460
Minichromosome maintenance (MCM2/3/5) family protein
Chr3_+_2737453 0.36 AT3G08970.2
ATERDJ3A
DNAJ heat shock N-terminal domain-containing protein
Chr2_+_13352917 0.36 AT2G31310.1
LBD14
LOB domain-containing protein 14
Chr5_+_3545211 0.35 AT5G11140.1
AT5G11140
phospholipase-like protein (PEARLI 4) family protein
Chr1_+_2263037 0.35 AT1G07370.1
PCNA1
proliferating cellular nuclear antigen 1
Chr5_+_15997970 0.35 AT5G39970.2
AT5G39970.1
AT5G39970.3
AT5G39970
catalytics
Chr5_-_3427897 0.35 AT5G10840.1
EMP1
Endomembrane protein 70 protein family
Chr2_-_8192536 0.35 AT2G18900.1
AT2G18900
Transducin/WD40 repeat-like superfamily protein
Chr5_+_1405181 0.34 AT5G04840.2
AT5G04840.1
AT5G04840
bZIP protein
Chr1_-_7804038 0.34 AT1G22110.2
AT1G22110.1
AT1G22110
structural constituent of ribosome
Chr2_-_19512728 0.34 AT2G47560.1
AT2G47560
RING/U-box superfamily protein
Chr4_+_7900374 0.33 AT4G13580.1
AT4G13580
Disease resistance-responsive (dirigent-like protein) family protein
Chr2_-_12992970 0.33 AT2G30480.6
AT2G30480
hypothetical protein
Chr5_-_23263457 0.33 AT5G57400.1
AT5G57400.2
AT5G57400
transmembrane protein
Chr5_+_5555222 0.33 AT5G16900.2
AT5G16900.3
AT5G16900
Leucine-rich repeat protein kinase family protein
Chr4_+_9975365 0.33 AT4G17970.1
ALMT12
aluminum-activated, malate transporter 12
Chr3_-_7286442 0.33 AT3G20830.1
UCNL
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Chr1_+_5543119 0.33 AT1G16190.1
AT1G16190.2
RAD23A
Rad23 UV excision repair protein family
Chr1_+_24102917 0.33 AT1G64870.1
AT1G64870
hypothetical protein
Chr1_-_4010433 0.32 AT1G11880.2
AT1G11880.1
AT1G11880.3
AT1G11880
transferases, transferring hexosyl groups
Chr3_+_23399236 0.32 AT3G63350.1
AT-HSFA7B
winged-helix DNA-binding transcription factor family protein
Chr1_-_3296198 0.32 AT1G10090.1
AT1G10090
Early-responsive to dehydration stress protein (ERD4)
Chr5_+_5555057 0.32 AT5G16900.1
AT5G16900
Leucine-rich repeat protein kinase family protein
Chr3_+_3463477 0.32 AT3G11050.1
FER2
ferritin 2
Chr3_+_19940499 0.32 AT3G53830.1
AT3G53830.3
AT3G53830.2
AT3G53830.4
AT3G53830
Regulator of chromosome condensation (RCC1) family protein
Chr4_+_14575718 0.32 AT4G29770.2
AT4G29770.1
AT4G29770
target of trans acting-siR480/255 protein
Chr2_+_10066117 0.32 AT2G23680.2
AT2G23680.1
AT2G23680
Cold acclimation protein WCOR413 family
Chr3_-_15903608 0.32 AT3G44190.2
AT3G44190.1
AT3G44190
FAD/NAD(P)-binding oxidoreductase family protein
Chr2_+_14133810 0.31 AT2G33350.2
AT2G33350.3
AT2G33350.1
AT2G33350
CCT motif family protein
Chr1_-_24601308 0.31 AT1G66080.1
AT1G66080
hikeshi-like protein
Chr1_+_20366313 0.31 AT1G54530.1
AT1G54530
Calcium-binding EF hand family protein
Chr1_-_7802566 0.31 AT1G22110.3
AT1G22110
structural constituent of ribosome
Chr2_+_14135050 0.31 AT2G33350.4
AT2G33350.5
AT2G33350
CCT motif family protein
Chr4_+_12030020 0.31 AT4G22960.1
AT4G22960
FAM63A-like protein (DUF544)
Chr3_+_2156736 0.30 AT3G06840.1
AT3G06840
hypothetical protein
Chr4_-_11143597 0.30 AT4G20810.1
AT4G20810
transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein
Chr5_-_16061043 0.30 AT5G40150.1
AT5G40150
Peroxidase superfamily protein
Chr1_+_26097729 0.30 AT1G69430.1
AT1G69430
Son of sevenless protein
Chr2_-_12992727 0.29 AT2G30480.1
AT2G30480.11
AT2G30480
hypothetical protein
Chr5_+_19135952 0.29 AT5G47120.1
BI1
BAX inhibitor 1
Chr1_+_25018077 0.29 AT1G67035.2
AT1G67035.1
AT1G67035
homeobox Hox-B3-like protein
Chr5_-_22221968 0.29 AT5G54690.1
GAUT12
galacturonosyltransferase 12
Chr5_-_16407930 0.29 AT5G40940.1
FLA20
putative fasciclin-like arabinogalactan protein 20
Chr4_-_14665583 0.29 AT4G29980.1
AT4G29980
fasciclin-like arabinogalactan protein
Chr5_+_3253122 0.29 AT5G10340.1
AT5G10340
F-box family protein
Chr2_-_5511099 0.29 AT2G13280.1
AT2G13280

Chr1_+_1339588 0.28 AT1G04778.1
AT1G04778
hypothetical protein
Chr3_-_14470707 0.28 AT3G42316.1
AT3G42316

Chr4_+_8419570 0.28 AT4G14695.1
AT4G14695.3
AT4G14695.2
AT4G14695
Uncharacterized protein family (UPF0041)
Chr3_-_2244820 0.28 AT3G07090.2
AT3G07090.1
AT3G07090
PPPDE putative thiol peptidase family protein
Chr5_+_5556103 0.28 AT5G16900.4
AT5G16900
Leucine-rich repeat protein kinase family protein
Chr4_-_14776058 0.28 AT4G30190.2
HA2
H[+]-ATPase 2
Chr1_+_21950503 0.28 AT1G59725.1
AT1G59725
DNAJ heat shock family protein
Chr4_-_14776247 0.28 AT4G30190.1
HA2
H[+]-ATPase 2
Chr5_-_23286005 0.28 AT5G57490.1
VDAC4
voltage dependent anion channel 4
Chr5_+_1238820 0.27 AT5G04390.1
AT5G04390
C2H2-type zinc finger family protein
Chr5_+_4615163 0.27 AT5G14310.1
CXE16
carboxyesterase 16
Chr4_-_10918371 0.27 AT4G20210.1
AT4G20210
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Chr2_+_347537 0.27 AT2G01810.1
AT2G01810
RING/FYVE/PHD zinc finger superfamily protein
Chr2_-_12991339 0.27 AT2G30480.12
AT2G30480.4
AT2G30480
hypothetical protein
Chr4_+_460395 0.27 AT4G01060.3
AT4G01060.2
AT4G01060.1
CPL3
CAPRICE-like MYB3
Chr4_+_15024444 0.27 AT4G30860.1
SDG4
SET domain group 4
Chr5_-_9944942 0.27 AT5G27920.1
AT5G27920
F-box family protein
Chr2_-_9002905 0.27 AT2G20940.2
AT2G20940.1
AT2G20940
transmembrane protein, putative (DUF1279)
Chr4_-_13975919 0.27 AT4G28140.1
AT4G28140
Integrase-type DNA-binding superfamily protein
Chr2_+_8695374 0.27 AT2G20142.1
AT2G20142
Toll-Interleukin-Resistance (TIR) domain family protein
Chr3_+_21680027 0.26 AT3G58620.1
AT3G58620.2
TTL4
tetratricopetide-repeat thioredoxin-like 4
Chr1_-_7083910 0.26 AT1G20430.1
AT1G20430
hypothetical protein
Chr5_+_24629256 0.26 AT5G61240.2
AT5G61240.1
AT5G61240
Leucine-rich repeat (LRR) family protein
Chr1_+_6643942 0.26 AT1G19230.2
AT1G19230
Riboflavin synthase-like superfamily protein
Chr1_-_3666526 0.26 AT1G10970.1
ZIP4
zinc transporter
Chr1_+_677360 0.26 AT1G02980.1
CUL2
cullin 2
Chr4_-_12814456 0.26 AT4G24890.1
PAP24
purple acid phosphatase 24
Chr1_+_5807200 0.26 AT1G16980.2
AT1G16980.1
TPS2
trehalose-6-phosphate synthase
Chr5_+_7718118 0.26 AT5G23020.1
IMS2
2-isopropylmalate synthase 2
Chr4_+_16917892 0.26 AT4G35680.1
AT4G35680
selection/upkeep of intraepithelial T-cells protein
Chr5_-_10984144 0.26 AT5G28937.1
AT5G28937

Chr3_-_2216483 0.26 AT3G07010.1
AT3G07010.2
AT3G07010
Pectin lyase-like superfamily protein
Chr5_-_20307943 0.26 AT5G49920.1
AT5G49920
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_3312651 0.25 AT2G07687.1
AT2G07687
Cytochrome c oxidase, subunit III
Chr5_+_19925426 0.25 AT5G49150.8
AT5G49150.7
GEX2
gamete expressed 2
Chr1_+_677869 0.25 AT1G02980.2
CUL2
cullin 2
Chr3_+_18393747 0.25 AT3G49620.1
DIN11
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_-_13048262 0.25 AT4G25540.1
MSH3
homolog of DNA mismatch repair protein MSH3
Chr2_+_14510482 0.25 AT2G34370.1
AT2G34370
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_+_6644189 0.25 AT1G19230.1
AT1G19230
Riboflavin synthase-like superfamily protein
Chr1_-_12658756 0.25 AT1G34575.1
AT1G34575
FAD-binding Berberine family protein
Chr3_+_10924708 0.25 AT3G28917.1
MIF2
mini zinc finger 2
Chr5_-_3246417 0.25 AT5G10320.6
AT5G10320
ATP synthase subunit B
Chr1_+_6331398 0.25 AT1G18400.2
AT1G18400.1
BEE1
BR enhanced expression 1
Chr5_+_7426310 0.24 AT5G22410.1
RHS18
root hair specific 18
Chr5_-_763480 0.24 AT5G03210.2
DIP2
E3 ubiquitin-protein ligase
Chr5_-_15935261 0.24 AT5G39790.2
AT5G39790.1
AT5G39790.3
AT5G39790
PROTEIN TARGETING TO STARCH (PTST)
Chr2_-_13862614 0.24 AT2G32680.1
RLP23
receptor like protein 23
Chr5_-_12084161 0.24 AT5G32460.1
AT5G32460
Transcriptional factor B3 family protein
Chr1_+_16240477 0.24 AT1G43150.1
AT1G43150

Chr2_-_6012698 0.24 AT2G14200.1
AT2G14200

Chr2_+_3543196 0.24 AT2G07788.1
AT2G07788

Chr1_+_1261762 0.24 AT1G04600.1
XIA
myosin XI A
Chr4_+_15842443 0.24 AT4G32830.1
AUR1
ataurora1
Chr5_+_5978546 0.24 AT5G18065.1
AT5G18065.2
AT5G18065.3
AT5G18065
target of trans acting-siR480/255 protein
Chr2_-_13653945 0.24 AT2G32120.2
AT2G32120.1
HSP70T-2
heat-shock protein 70T-2
Chr5_+_19924760 0.23 AT5G49150.6
AT5G49150.5
GEX2
gamete expressed 2
Chr3_-_19734695 0.23 AT3G53235.1
AT3G53235
hypothetical protein
Chr2_-_2272452 0.23 AT2G05920.1
AT2G05920
Subtilase family protein
Chr2_-_14469876 0.23 AT2G34270.1
AT2G34270
hypothetical protein
Chr4_+_16925301 0.23 AT4G35710.1
AT4G35710
DUF241 domain protein, putative (DUF241)
Chr3_-_22185599 0.23 AT3G60070.6
AT3G60070
Major facilitator superfamily protein
Chr5_-_763322 0.23 AT5G03210.1
DIP2
E3 ubiquitin-protein ligase
Chr1_+_22915699 0.23 AT1G62010.1
AT1G62010
Mitochondrial transcription termination factor family protein
Chr1_+_16177091 0.23 AT1G43030.1
AT1G43030

Chr1_-_13229796 0.22 AT1G35730.1
AT1G35730.2
PUM9
pumilio 9
Chr5_+_7916314 0.22 AT5G23480.6
AT5G23480.1
AT5G23480
SWIB/MDM2, Plus-3 and GYF domain-containing protein
Chr4_-_13920352 0.22 AT4G27970.2
AT4G27970.3
AT4G27970.1
AT4G27970.6
AT4G27970.5
AT4G27970.4
SLAH2
SLAC1 homologue 2
Chr4_-_17033972 0.22 AT4G35985.3
AT4G35985.2
AT4G35985
Senescence/dehydration-associated protein-like protein
Chr3_+_3694956 0.22 AT3G11690.1
AT3G11690
hypothetical protein
Chr5_+_22571645 0.22 AT5G55770.1
AT5G55770
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_190369 0.22 AT2G01430.1
AT2G01430.2
HB17
homeobox-leucine zipper protein 17
Chr5_-_21323780 0.22 AT5G52540.1
AT5G52540
keratin-associated protein, putative (DUF819)
Chr4_+_15317499 0.22 AT4G31610.2
AT4G31610.1
REM1
Transcriptional factor B3 family protein
Chr1_-_3444360 0.22 AT1G10470.1
ARR4
response regulator 4
Chr5_-_22854801 0.22 AT5G56430.1
AT5G56430
F-box/FBD-like domains containing protein
Chr4_+_5712328 0.22 AT4G08910.1
AT4G08910
homeobox protein
Chr5_+_22941750 0.21 AT5G56700.1
AT5G56700.2
AT5G56700
FBD / Leucine Rich Repeat domains containing protein
Chr2_-_10207911 0.21 AT2G23990.2
AT2G23990.1
ENODL11
early nodulin-like protein 11
Chr5_+_19924354 0.21 AT5G49150.4
AT5G49150.3
AT5G49150.2
AT5G49150.1
GEX2
gamete expressed 2
Chr4_-_7428563 0.21 AT4G12530.1
AT4G12530
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_-_3443957 0.21 AT1G10470.3
AT1G10470.2
ARR4
response regulator 4
Chr3_+_11209586 0.21 AT3G29255.1
AT3G29255
Putative pentacyclic triterpene synthase 7
Chr5_-_17534796 0.21 AT5G43650.1
AT5G43650.2
BHLH92
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_516391 0.21 AT3G02493.1
RTFL19
ROTUNDIFOLIA like 19
Chr1_+_12180483 0.21 AT1G33600.1
AT1G33600
Leucine-rich repeat (LRR) family protein
Chr5_+_5087219 0.21 AT5G15640.1
AT5G15640.2
AT5G15640
Mitochondrial substrate carrier family protein
Chr5_-_21787444 0.21 AT5G53635.1
AT5G53635
F-box/RNI-like/FBD-like domains-containing protein
Chr3_-_15666468 0.21 AT3G43810.1
AT3G43810.2
AT3G43810.3
CAM7
calmodulin 7
Chr1_-_11239363 0.21 AT1G31370.1
AT1G31370
Ubiquitin-specific protease family C19-related protein
Chr1_+_6571184 0.21 AT1G19030.1
AT1G19030

Chr2_+_19197330 0.21 AT2G46720.1
KCS13
3-ketoacyl-CoA synthase 13
Chr2_-_6056778 0.21 AT2G14288.1
AT2G14288
F-box/kelch-repeat SKIP6-like protein
Chr2_-_3036387 0.21 AT2G07310.1
AT2G07310
hypothetical protein
Chr4_+_17691687 0.21 AT4G37650.1
SHR
GRAS family transcription factor
Chr2_-_15841850 0.20 AT2G37800.1
AT2G37800
cysteine/histidine-rich C1 domain protein
Chr5_+_3052062 0.20 AT5G09810.1
ACT7
actin 7
Chr4_+_14525830 0.20 AT4G29640.1
AT4G29640
Cytidine/deoxycytidylate deaminase family protein
Chr1_+_29549540 0.20 AT1G78570.1
RHM1
rhamnose biosynthesis 1
Chr1_-_2219649 0.20 AT1G07220.1
AT1G07220
O-glucosyltransferase rumi-like protein (DUF821)
Chr1_-_15971112 0.20 AT1G42530.1
AT1G42530

Chr4_-_8067576 0.20 AT4G13965.1
AT4G13965
F-box/FBD/LRR protein
Chr1_+_27917687 0.20 AT1G74240.2
AT1G74240
Mitochondrial substrate carrier family protein
Chr5_+_1427117 0.20 AT5G04890.1
RTM2
HSP20-like chaperones superfamily protein
Chr2_+_7679008 0.20 AT2G17680.1
AT2G17680
DUF241 domain protein, putative (DUF241)
Chr4_-_11612903 0.20 AT4G21890.1
AT4G21890
zinc finger MYND domain protein
Chr3_-_22186329 0.20 AT3G60070.5
AT3G60070
Major facilitator superfamily protein
Chr5_+_6249727 0.20 AT5G18740.1
AT5G18740
hypothetical protein (DUF3444)
Chr5_+_3093272 0.20 AT5G09910.5
AT5G09910
Ras-related small GTP-binding family protein
Chr1_+_3957284 0.19 AT1G11730.1
AT1G11730
Galactosyltransferase family protein
Chr5_+_22302000 0.19 AT5G54920.2
AT5G54920.1
AT5G54920
polyadenylate-binding protein interacting protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G11660

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0015840 urea transport(GO:0015840)
0.1 0.6 GO:0008615 pyridoxine biosynthetic process(GO:0008615)
0.1 0.5 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.1 0.3 GO:0006984 ER-nucleus signaling pathway(GO:0006984)
0.1 0.3 GO:1900369 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.1 0.5 GO:1990019 protein storage vacuole organization(GO:1990019)
0.1 0.3 GO:0051455 attachment of spindle microtubules to kinetochore involved in meiotic chromosome segregation(GO:0051316) attachment of spindle microtubules to kinetochore involved in homologous chromosome segregation(GO:0051455) microtubule cytoskeleton organization involved in homologous chromosome segregation(GO:0090172)
0.1 0.2 GO:0032491 detection of molecule of fungal origin(GO:0032491)
0.1 3.0 GO:0034620 cellular response to unfolded protein(GO:0034620)
0.1 0.3 GO:0001113 DNA-templated transcriptional open complex formation(GO:0001112) transcriptional open complex formation at RNA polymerase II promoter(GO:0001113) protein-DNA complex remodeling(GO:0001120) macromolecular complex remodeling(GO:0034367)
0.1 0.4 GO:0006272 leading strand elongation(GO:0006272)
0.1 0.2 GO:0030811 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.1 0.6 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 0.2 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 0.2 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.1 0.5 GO:0043096 adenine salvage(GO:0006168) purine nucleobase salvage(GO:0043096)
0.1 0.4 GO:0034315 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.0 0.2 GO:0033478 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.0 0.2 GO:0046741 transport of virus in host, tissue to tissue(GO:0046741)
0.0 0.3 GO:0090116 C-5 methylation of cytosine(GO:0090116)
0.0 0.2 GO:0045005 meiotic mismatch repair(GO:0000710) maintenance of DNA repeat elements(GO:0043570) DNA-dependent DNA replication maintenance of fidelity(GO:0045005) regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.0 0.2 GO:0016572 histone phosphorylation(GO:0016572)
0.0 0.0 GO:0042539 hypotonic salinity response(GO:0042539)
0.0 0.1 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.0 0.3 GO:0005513 detection of calcium ion(GO:0005513)
0.0 0.4 GO:0010244 response to low fluence blue light stimulus by blue low-fluence system(GO:0010244)
0.0 0.2 GO:0046087 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.3 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0 0.1 GO:0071323 cellular response to chitin(GO:0071323)
0.0 0.2 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.4 GO:0030307 positive regulation of cell growth(GO:0030307)
0.0 1.0 GO:0042335 cuticle development(GO:0042335)
0.0 0.9 GO:0009692 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.0 0.5 GO:0015743 malate transport(GO:0015743)
0.0 0.4 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.2 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.6 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.4 GO:0010030 positive regulation of seed germination(GO:0010030)
0.0 0.2 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.0 0.1 GO:0015824 proline transport(GO:0015824)
0.0 0.1 GO:0042989 sequestering of actin monomers(GO:0042989)
0.0 0.1 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.0 0.3 GO:0009098 leucine biosynthetic process(GO:0009098)
0.0 0.1 GO:0010155 regulation of proton transport(GO:0010155)
0.0 0.0 GO:0031848 protection from non-homologous end joining at telomere(GO:0031848)
0.0 0.1 GO:0009643 photosynthetic acclimation(GO:0009643)
0.0 0.2 GO:0052548 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.2 GO:0070940 dephosphorylation of RNA polymerase II C-terminal domain(GO:0070940)
0.0 0.2 GO:0010098 suspensor development(GO:0010098)
0.0 0.0 GO:0034247 snoRNA splicing(GO:0034247)
0.0 0.2 GO:0015780 nucleotide-sugar transport(GO:0015780)
0.0 0.5 GO:0048235 pollen sperm cell differentiation(GO:0048235)
0.0 0.1 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.2 GO:0043248 proteasome assembly(GO:0043248)
0.0 0.2 GO:0006893 Golgi to plasma membrane transport(GO:0006893)
0.0 0.0 GO:0031114 regulation of microtubule depolymerization(GO:0031114)
0.0 0.1 GO:0044205 'de novo' UMP biosynthetic process(GO:0044205)
0.0 0.7 GO:0008643 carbohydrate transport(GO:0008643)
0.0 0.1 GO:0033962 cytoplasmic mRNA processing body assembly(GO:0033962)
0.0 0.1 GO:0010230 alternative respiration(GO:0010230)
0.0 0.3 GO:0046839 phospholipid dephosphorylation(GO:0046839)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.5 GO:0016363 nuclear matrix(GO:0016363)
0.1 0.7 GO:0000326 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 0.2 GO:0009501 amyloplast(GO:0009501)
0.1 0.2 GO:0032133 chromosome passenger complex(GO:0032133)
0.1 0.7 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.1 0.7 GO:0030131 clathrin adaptor complex(GO:0030131)
0.0 0.3 GO:0005673 transcription factor TFIIE complex(GO:0005673)
0.0 0.3 GO:0030892 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.0 0.4 GO:0031209 SCAR complex(GO:0031209)
0.0 0.2 GO:0043527 tRNA methyltransferase complex(GO:0043527)
0.0 0.5 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
0.0 0.2 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 0.4 GO:0031355 intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359)
0.0 0.2 GO:0032300 mismatch repair complex(GO:0032300)
0.0 0.2 GO:0008541 proteasome regulatory particle, lid subcomplex(GO:0008541)
0.0 1.3 GO:0005887 integral component of plasma membrane(GO:0005887)
0.0 0.5 GO:0000145 exocyst(GO:0000145)
0.0 0.1 GO:1990726 Lsm1-7-Pat1 complex(GO:1990726)
0.0 0.6 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.1 GO:0005801 cis-Golgi network(GO:0005801)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.2 1.9 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.2 0.8 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.1 1.5 GO:0002020 protease binding(GO:0002020)
0.1 0.5 GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.1 0.3 GO:0000009 alpha-1,6-mannosyltransferase activity(GO:0000009)
0.1 0.3 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.1 0.6 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.3 GO:0004174 electron-transferring-flavoprotein dehydrogenase activity(GO:0004174) oxidoreductase activity, acting on the CH-NH group of donors, quinone or similar compound as acceptor(GO:0016649)
0.1 0.9 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.2 GO:0010280 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.1 0.3 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.1 0.3 GO:0004322 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.1 0.5 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.1 0.2 GO:0032135 DNA insertion or deletion binding(GO:0032135)
0.1 0.2 GO:0035175 histone serine kinase activity(GO:0035174) histone kinase activity (H3-S10 specific)(GO:0035175)
0.1 0.4 GO:0051018 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.0 0.2 GO:0005223 intracellular cGMP activated cation channel activity(GO:0005223)
0.0 0.8 GO:0051787 misfolded protein binding(GO:0051787)
0.0 0.3 GO:0051185 S-adenosyl-L-methionine transmembrane transporter activity(GO:0000095) coenzyme transporter activity(GO:0051185)
0.0 0.2 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.0 0.1 GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity(GO:0008963)
0.0 0.1 GO:0042577 sphingosine-1-phosphate phosphatase activity(GO:0042392) lipid phosphatase activity(GO:0042577)
0.0 0.6 GO:0005375 copper ion transmembrane transporter activity(GO:0005375)
0.0 0.3 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.3 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.0 0.1 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.0 0.2 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.2 GO:0005457 GDP-fucose transmembrane transporter activity(GO:0005457)
0.0 0.1 GO:0015018 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018)
0.0 0.4 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.2 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.0 0.7 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.3 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 1.1 GO:0008171 O-methyltransferase activity(GO:0008171)
0.0 0.6 GO:0016843 amine-lyase activity(GO:0016843)
0.0 0.3 GO:0070628 proteasome binding(GO:0070628)
0.0 0.7 GO:0015293 symporter activity(GO:0015293)
0.0 0.1 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.0 0.1 GO:0015193 L-proline transmembrane transporter activity(GO:0015193)
0.0 0.3 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.0 0.1 GO:0003785 actin monomer binding(GO:0003785)
0.0 0.3 GO:0005227 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.0 0.1 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 0.0 GO:0051010 microtubule plus-end binding(GO:0051010)
0.0 0.2 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.2 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.2 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.0 0.2 GO:0004867 serine-type endopeptidase inhibitor activity(GO:0004867)
0.0 0.3 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.3 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha
0.0 0.1 PID AVB3 OPN PATHWAY Osteopontin-mediated events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 REACTOME REGULATION OF HYPOXIA INDUCIBLE FACTOR HIF BY OXYGEN Genes involved in Regulation of Hypoxia-inducible Factor (HIF) by Oxygen
0.1 0.3 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.0 0.1 REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell
0.0 0.1 REACTOME SIGNALING BY PDGF Genes involved in Signaling by PDGF