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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G06746
Z-value: 1.00
Transcription factors associated with AT4G06746
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G06746
|
AT4G06746 | related to AP2 9 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| RAP2.9 | arTal_v1_Chr4_-_4074735_4074735 | -0.26 | 3.6e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 2.21 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr3_-_20203919_20203919 Show fit | 1.62 |
AT3G54580.1
|
Proline-rich extensin-like family protein |
|
| arTal_v1_Chr4_+_10703348_10703348 Show fit | 1.57 |
AT4G19680.1
AT4G19680.2 |
iron regulated transporter 2 |
|
| arTal_v1_Chr3_-_1758807_1758807 Show fit | 1.54 |
AT3G05890.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr1_+_10991478_10991478 Show fit | 1.41 |
AT1G30870.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_19040456_19040456 Show fit | 1.37 |
AT5G46900.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_4087689_4087689 Show fit | 1.36 |
AT5G12940.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr1_+_20462940_20462940 Show fit | 1.26 |
AT1G54890.1
|
Late embryogenesis abundant (LEA) protein-like protein |
|
| arTal_v1_Chr3_-_8589754_8589754 Show fit | 1.21 |
AT3G23810.1
|
S-adenosyl-l-homocysteine (SAH) hydrolase 2 |
|
| arTal_v1_Chr2_+_17945662_17945662 Show fit | 1.19 |
AT2G43150.1
|
Proline-rich extensin-like family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G06746
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.0 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.0 | 2.3 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
| 0.0 | 2.2 | GO:0006101 | tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101) |
| 0.0 | 2.0 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.1 | 1.9 | GO:0006826 | iron ion transport(GO:0006826) |
| 0.4 | 1.7 | GO:0006024 | aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203) |
| 0.2 | 1.6 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.2 | 1.6 | GO:0080183 | response to photooxidative stress(GO:0080183) |
| 0.3 | 1.5 | GO:0072708 | response to sorbitol(GO:0072708) |
| 0.0 | 1.5 | GO:0009825 | multidimensional cell growth(GO:0009825) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 10.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 8.8 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 5.9 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 5.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.9 | GO:0030312 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 2.7 | GO:0048046 | apoplast(GO:0048046) |
| 0.0 | 1.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 1.6 | GO:0005759 | mitochondrial matrix(GO:0005759) |
| 0.1 | 1.1 | GO:0031012 | extracellular matrix(GO:0031012) |
| 0.1 | 0.9 | GO:0042555 | MCM complex(GO:0042555) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.4 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.4 | 2.1 | GO:0008964 | phosphoenolpyruvate carboxylase activity(GO:0008964) |
| 0.1 | 2.1 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
| 0.0 | 2.0 | GO:0036442 | hydrogen-exporting ATPase activity(GO:0036442) |
| 0.1 | 1.9 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.0 | 1.9 | GO:0008514 | organic anion transmembrane transporter activity(GO:0008514) |
| 0.3 | 1.7 | GO:0003979 | UDP-glucose 6-dehydrogenase activity(GO:0003979) |
| 0.2 | 1.7 | GO:0008113 | peptide-methionine (S)-S-oxide reductase activity(GO:0008113) |
| 0.1 | 1.7 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.0 | 1.7 | GO:0004601 | peroxidase activity(GO:0004601) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.4 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.0 | 0.3 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
| 0.0 | 0.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.6 | REACTOME REPAIR SYNTHESIS FOR GAP FILLING BY DNA POL IN TC NER | Genes involved in Repair synthesis for gap-filling by DNA polymerase in TC-NER |
| 0.1 | 0.2 | REACTOME PREFOLDIN MEDIATED TRANSFER OF SUBSTRATE TO CCT TRIC | Genes involved in Prefoldin mediated transfer of substrate to CCT/TriC |
| 0.0 | 0.1 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.0 | 0.1 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
| 0.0 | 0.0 | REACTOME FRS2 MEDIATED CASCADE | Genes involved in FRS2-mediated cascade |