Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT4G01550
Z-value: 1.28
Transcription factors associated with AT4G01550
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G01550
|
AT4G01550 | NAC domain containing protein 69 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC069 | arTal_v1_Chr4_-_676411_676445 | -0.18 | 5.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_197974_197974 Show fit | 2.02 |
AT3G01500.1
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_197564_197564 Show fit | 2.02 |
AT3G01500.4
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198160_198160 Show fit | 2.00 |
AT3G01500.2
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr3_-_198664_198664 Show fit | 1.99 |
AT3G01500.3
|
carbonic anhydrase 1 |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.94 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 1.78 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr4_+_13128394_13128394 Show fit | 1.77 |
AT4G25810.1
|
xyloglucan endotransglycosylase 6 |
|
| arTal_v1_Chr1_-_24558322_24558322 Show fit | 1.73 |
AT1G65970.1
|
thioredoxin-dependent peroxidase 2 |
|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 1.69 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr3_-_3420932_3420932 Show fit | 1.46 |
AT3G10930.1
|
hypothetical protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G01550
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 8.0 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.0 | 5.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.9 | 3.7 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.2 | 3.6 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.1 | 3.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.1 | 2.2 | GO:0015833 | oligopeptide transport(GO:0006857) peptide transport(GO:0015833) |
| 0.2 | 2.1 | GO:0080144 | amino acid homeostasis(GO:0080144) |
| 0.0 | 2.0 | GO:0009860 | pollen tube growth(GO:0009860) |
| 0.6 | 1.9 | GO:0060236 | regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224) |
| 0.3 | 1.8 | GO:0006471 | protein ADP-ribosylation(GO:0006471) protein poly-ADP-ribosylation(GO:0070212) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 12.2 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 2.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.2 | 2.3 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.2 | 1.6 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.0 | 1.4 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.1 | 1.3 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.3 | 1.0 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.3 | 0.9 | GO:0070382 | exocytic vesicle(GO:0070382) |
| 0.3 | 0.8 | GO:0043667 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 8.3 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 2.8 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.3 | 2.4 | GO:1904680 | oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680) |
| 0.3 | 2.3 | GO:0004096 | catalase activity(GO:0004096) |
| 0.0 | 2.0 | GO:0003993 | acid phosphatase activity(GO:0003993) |
| 0.2 | 1.9 | GO:0008379 | thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920) |
| 0.0 | 1.9 | GO:0016627 | oxidoreductase activity, acting on the CH-CH group of donors(GO:0016627) |
| 0.5 | 1.8 | GO:0080042 | ADP-glucose pyrophosphohydrolase activity(GO:0080042) |
| 0.1 | 1.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.5 | 1.6 | GO:0050403 | trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 8.0 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.6 | 1.9 | PID AURORA A PATHWAY | Aurora A signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.3 | 8.0 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.3 | 0.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.4 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.0 | 0.2 | REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION | Genes involved in Platelet activation, signaling and aggregation |