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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G01540

Z-value: 0.64

Transcription factors associated with AT4G01540

Gene Symbol Gene ID Gene Info
AT4G01540
AT4G01540 NAC with transmembrane motif1

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NTM1arTal_v1_Chr4_-_672789_6727890.687.0e-03Click!

Activity profile of AT4G01540 motif

Sorted Z-values of AT4G01540 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_+_7845923 0.75 AT2G18050.2
AT2G18050.1
HIS1-3
histone H1-3
Chr3_+_22216540 0.65 AT3G60140.2
AT3G60140.1
DIN2
Glycosyl hydrolase superfamily protein
Chr2_+_18347765 0.63 AT2G44460.2
BGLU28
beta glucosidase 28
Chr2_+_18346306 0.62 AT2G44460.1
BGLU28
beta glucosidase 28
Chr2_-_7919345 0.51 AT2G18193.1
AT2G18193
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_-_3091766 0.50 AT3G10020.2
AT3G10020
plant/protein
Chr3_-_2699257 0.49 AT3G08860.2
PYD4
PYRIMIDINE 4
Chr5_+_5237970 0.48 AT5G16030.1
AT5G16030.4
AT5G16030.2
AT5G16030.3
AT5G16030
mental retardation GTPase activating protein
Chr3_-_2699420 0.48 AT3G08860.1
PYD4
PYRIMIDINE 4
Chr1_+_24472873 0.47 AT1G65800.1
AT1G65800.2
RK2
receptor kinase 2
Chr3_+_4729399 0.46 AT3G14210.1
AT3G14210.2
ESM1
GDSL-like lipase/acylhydrolase superfamily protein
Chr3_-_3091922 0.45 AT3G10020.1
AT3G10020
plant/protein
Chr3_-_18718396 0.44 AT3G50440.1
MES10
methylesterase
Chr5_+_6566271 0.44 AT5G19470.1
AT5G19470.2
NUDT24
nudix hydrolase homolog 24
Chr1_-_30404713 0.41 AT1G80920.1
J8
Chaperone DnaJ-domain superfamily protein
Chr1_+_21887588 0.41 AT1G59590.1
ZCF37
ZCF37
Chr2_+_9254378 0.41 AT2G21640.1
AT2G21640
marker for oxidative stress response protein
Chr1_+_8395466 0.40 AT1G23730.2
AT1G23730.1
BCA3
beta carbonic anhydrase 3
Chr2_-_8913747 0.38 AT2G20670.1
AT2G20670
sugar phosphate exchanger, putative (DUF506)
Chr2_-_15412064 0.38 AT2G36750.1
UGT73C1
UDP-glucosyl transferase 73C1
Chr1_+_24113109 0.38 AT1G64900.1
CYP89A2
cytochrome P450, family 89, subfamily A, polypeptide 2
Chr5_-_4430901 0.37 AT5G13730.1
SIG4
sigma factor 4
Chr5_-_8160343 0.37 AT5G24120.2
AT5G24120.1
SIGE
sigma factor E
Chr2_-_15425129 0.37 AT2G36800.1
DOGT1
don-glucosyltransferase 1
Chr4_-_7494234 0.37 AT4G12735.1
AT4G12735
hypothetical protein
Chr5_+_5238502 0.36 AT5G16030.5
AT5G16030
mental retardation GTPase activating protein
Chr4_+_2189515 0.36 AT4G04410.1
AT4G04410

Chr3_-_6143310 0.36 AT3G17930.1
DAC
transmembrane protein
Chr5_+_5995479 0.36 AT5G18130.2
AT5G18130
transmembrane protein
Chr5_-_6850237 0.36 AT5G20280.1
SPS1F
sucrose phosphate synthase 1F
Chr5_-_14123362 0.35 AT5G35970.1
AT5G35970
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_5995323 0.35 AT5G18130.1
AT5G18130
transmembrane protein
Chr3_-_826585 0.35 AT3G03470.1
CYP89A9
cytochrome P450, family 87, subfamily A, polypeptide 9
Chr3_+_15983199 0.35 AT3G44300.1
NIT2
nitrilase 2
Chr5_+_20415764 0.35 AT5G50160.1
AT5G50160.2
FRO8
ferric reduction oxidase 8
Chr3_-_6172005 0.35 AT3G18035.1
AT3G18035.2
HON4
winged-helix DNA-binding transcription factor family protein
Chr3_-_17133462 0.35 AT3G46530.1
RPP13
NB-ARC domain-containing disease resistance protein
Chr4_+_17646408 0.35 AT4G37560.1
AT4G37560.2
AT4G37560
Acetamidase/Formamidase family protein
Chr1_-_4358894 0.35 AT1G12780.1
UGE1
UDP-D-glucose/UDP-D-galactose 4-epimerase 1
Chr4_-_9061833 0.35 AT4G15990.1
AT4G15990
hypothetical protein
Chr5_-_642026 0.34 AT5G02810.1
AT5G02810.2
PRR7
pseudo-response regulator 7
Chr5_-_8160163 0.34 AT5G24120.3
SIGE
sigma factor E
Chr5_-_2062027 0.34 AT5G06690.3
AT5G06690.2
AT5G06690.1
AT5G06690.4
WCRKC1
WCRKC thioredoxin 1
Chr1_+_24824356 0.34 AT1G66540.1
AT1G66540.2
AT1G66540
Cytochrome P450 superfamily protein
Chr1_+_25464712 0.33 AT1G67900.4
AT1G67900.3
AT1G67900.5
AT1G67900
Phototropic-responsive NPH3 family protein
Chr5_-_8181107 0.33 AT5G24155.2
AT5G24155.3
AT5G24155.1
AT5G24155
FAD/NAD(P)-binding oxidoreductase family protein
Chr2_-_1339468 0.33 AT2G04050.1
AT2G04050
MATE efflux family protein
Chr1_+_11133410 0.33 AT1G31170.4
AT1G31170.1
AT1G31170.2
AT1G31170.3
AT1G31170.5
SRX
sulfiredoxin
Chr4_-_12568754 0.33 AT4G24230.6
AT4G24230.4
AT4G24230.5
AT4G24230.3
AT4G24230.2
AT4G24230.1
ACBP3
acyl-CoA-binding domain 3
Chr1_-_21635344 0.33 AT1G58320.1
AT1G58320
PLAC8 family protein
Chr3_+_16818347 0.33 AT3G45780.2
PHOT1
phototropin 1
Chr5_-_17458800 0.33 AT5G43450.2
AT5G43450
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_-_9634470 0.33 AT3G26290.1
CYP71B26
cytochrome P450, family 71, subfamily B, polypeptide 26
Chr5_+_25679425 0.32 AT5G64190.2
AT5G64190.1
AT5G64190
neuronal PAS domain protein
Chr2_-_13101371 0.32 AT2G30750.1
CYP71A12
cytochrome P450 family 71 polypeptide
Chr3_+_16816721 0.32 AT3G45780.1
PHOT1
phototropin 1
Chr5_+_16727530 0.32 AT5G41790.1
CIP1
COP1-interactive protein 1
Chr5_-_17458980 0.32 AT5G43450.1
AT5G43450
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_-_3025945 0.32 AT3G09850.1
AT3G09850
D111/G-patch domain-containing protein
Chr1_+_4461738 0.32 AT1G13090.1
AT1G13090.2
CYP71B28
cytochrome P450, family 71, subfamily B, polypeptide 28
Chr1_+_19052193 0.32 AT1G51402.1
AT1G51402
hypothetical protein
Chr3_+_16789780 0.32 AT3G45730.1
AT3G45730
hypothetical protein
Chr5_+_8515200 0.32 AT5G24800.1
BZIP9
basic leucine zipper 9
Chr3_-_9634822 0.32 AT3G26290.2
CYP71B26
cytochrome P450, family 71, subfamily B, polypeptide 26
Chr1_+_739544 0.31 AT1G03090.2
AT1G03090.1
MCCA
methylcrotonyl-CoA carboxylase alpha chain
Chr4_+_18413775 0.31 AT4G39675.1
AT4G39675
hypothetical protein
Chr1_-_23246949 0.31 AT1G62770.1
AT1G62770
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_3282131 0.31 AT3G10525.1
LGO
LOSS OF GIANT CELLS FROM ORGANS
Chr1_+_26452847 0.31 AT1G70250.1
AT1G70250
receptor serine/threonine kinase
Chr3_+_9352444 0.31 AT3G25690.4
AT3G25690.5
AT3G25690.6
CHUP1
Hydroxyproline-rich glycoprotein family protein
Chr3_-_1108252 0.31 AT3G04210.2
AT3G04210
Disease resistance protein (TIR-NBS class)
Chr3_-_22659896 0.31 AT3G61210.1
AT3G61210
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_1108069 0.31 AT3G04210.1
AT3G04210
Disease resistance protein (TIR-NBS class)
Chr1_-_130570 0.31 AT1G01320.1
AT1G01320.3
AT1G01320.2
AT1G01320
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_2034156 0.31 AT1G06645.1
AT1G06645
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_25464376 0.31 AT1G67900.2
AT1G67900.1
AT1G67900
Phototropic-responsive NPH3 family protein
Chr4_-_468294 0.31 AT4G01080.1
TBL26
TRICHOME BIREFRINGENCE-LIKE 26
Chr1_-_8556555 0.30 AT1G24160.2
AT1G24160
triadin
Chr1_+_30290325 0.30 AT1G80570.1
AT1G80570.3
AT1G80570.2
AT1G80570
RNI-like superfamily protein
Chr2_+_15050677 0.30 AT2G35820.1
AT2G35820
ureidoglycolate hydrolase
Chr1_+_28107822 0.30 AT1G74810.2
AT1G74810.5
AT1G74810.3
AT1G74810.4
AT1G74810.6
AT1G74810.7
AT1G74810.1
BOR5
HCO3- transporter family
Chr1_-_8556750 0.30 AT1G24160.1
AT1G24160
triadin
Chr1_-_28284036 0.30 AT1G75380.3
AT1G75380.1
AT1G75380.2
AT1G75380.4
BBD1
bifunctional nuclease in basal defense response 1
Chr3_+_1172687 0.30 AT3G04420.2
AT3G04420.1
NAC048
NAC domain containing protein 48
Chr5_-_3595003 0.30 AT5G11260.2
AT5G11260.1
HY5
Basic-leucine zipper (bZIP) transcription factor family protein
Chr3_-_2329926 0.30 AT3G07310.2
AT3G07310.1
AT3G07310
phosphoserine aminotransferase, putative (DUF760)
Chr3_-_3119391 0.30 AT3G10113.1
AT3G10113
Homeodomain-like superfamily protein
Chr2_-_14810164 0.30 AT2G35130.1
AT2G35130.3
AT2G35130.2
AT2G35130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_17550179 0.30 AT5G43700.1
ATAUX2-11
AUX/IAA transcriptional regulator family protein
Chr2_+_15050498 0.30 AT2G35820.2
AT2G35820
ureidoglycolate hydrolase
Chr2_+_8108898 0.29 AT2G18700.1
TPS11
trehalose phosphatase/synthase 11
Chr3_+_9353010 0.29 AT3G25690.2
AT3G25690.3
CHUP1
Hydroxyproline-rich glycoprotein family protein
Chr3_+_15567067 0.29 AT3G43670.1
AT3G43670
Copper amine oxidase family protein
Chr5_+_4213955 0.29 AT5G13210.1
AT5G13210
Uncharacterized conserved protein UCP015417, vWA
Chr1_+_21146236 0.29 AT1G56460.3
AT1G56460.2
AT1G56460.1
AT1G56460
HIT zinc finger and PAPA-1-like domain-containing protein
Chr3_-_9597927 0.29 AT3G26220.1
CYP71B3
cytochrome P450, family 71, subfamily B, polypeptide 3
Chr5_-_16195751 0.29 AT5G40450.2
AT5G40450.1
AT5G40450
A-kinase anchor-like protein
Chr3_+_20636607 0.29 AT3G55630.4
AT3G55630.3
AT3G55630.1
AT3G55630.2
AT3G55630.6
AT3G55630.5
DFD
DHFS-FPGS homolog D
Chr1_+_24035941 0.29 AT1G64680.1
AT1G64680.2
AT1G64680
beta-carotene isomerase D27
Chr1_-_2163387 0.29 AT1G07040.1
AT1G07040
plant/protein
Chr4_+_8475101 0.29 AT4G14760.3
AT4G14760.1
NET1B
kinase interacting (KIP1-like) family protein
Chr1_-_26770175 0.29 AT1G71000.1
AT1G71000.2
AT1G71000
Chaperone DnaJ-domain superfamily protein
Chr2_-_10737800 0.28 AT2G25200.1
AT2G25200
hypothetical protein (DUF868)
Chr1_+_24677121 0.28 AT1G66230.1
MYB20
myb domain protein 20
Chr1_+_26705420 0.28 AT1G70820.1
AT1G70820.2
AT1G70820
phosphoglucomutase, putative / glucose phosphomutase
Chr1_-_24936512 0.28 AT1G66840.1
AT1G66840.2
PMI2
PLASTID MOVEMENT IMPAIRED protein (DUF827)
Chr2_+_12592129 0.28 AT2G29320.1
AT2G29320.2
AT2G29320.3
AT2G29320
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_23167774 0.28 AT5G57180.1
AT5G57180.2
AT5G57180.4
AT5G57180.3
CIA2
chloroplast import apparatus 2
Chr5_+_8773734 0.28 AT5G25280.1
AT5G25280.3
AT5G25280.2
AT5G25280
serine-rich protein-like protein
Chr4_-_18459257 0.28 AT4G39780.1
AT4G39780
Integrase-type DNA-binding superfamily protein
Chr1_-_10326848 0.28 AT1G29530.1
AT1G29530
hypothetical protein
Chr3_-_8890927 0.28 AT3G24460.1
AT3G24460
Serinc-domain containing serine and sphingolipid biosynthesis protein
Chr1_-_5265103 0.28 AT1G15290.2
AT1G15290.1
AT1G15290
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_5946448 0.28 AT1G17360.1
AT1G17360
LOW protein: protein phosphatase 1 regulatory subunit-like protein
Chr4_+_14569665 0.28 AT4G29750.1
AT4G29750.2
AT4G29750
CRS1 / YhbY (CRM) domain-containing protein
Chr1_-_2287730 0.28 AT1G07440.2
AT1G07440.1
AT1G07440
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_1164910 0.28 AT1G04350.1
AT1G04350
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_-_3065294 0.28 AT4G06477.1
AT4G06477

Chr1_-_24963946 0.28 AT1G66910.1
AT1G66910.2
AT1G66910
Protein kinase superfamily protein
Chr1_+_17847042 0.27 AT1G48300.1
DGAT3
diacylglycerol acyltransferase
Chr2_+_12326808 0.27 AT2G28720.1
AT2G28720
Histone superfamily protein
Chr2_-_10113005 0.27 AT2G23760.3
AT2G23760.4
AT2G23760.1
BLH4
BEL1-like homeodomain 4
Chr5_+_16893849 0.27 AT5G42250.1
AT5G42250
Zinc-binding alcohol dehydrogenase family protein
Chr1_-_27994178 0.27 AT1G74480.1
RKD2
RWP-RK domain-containing protein
Chr1_-_28024860 0.27 AT1G74590.1
GSTU10
glutathione S-transferase TAU 10
Chr4_-_8870801 0.27 AT4G15530.7
AT4G15530.6
AT4G15530.5
AT4G15530.3
AT4G15530.4
AT4G15530.1
PPDK
pyruvate orthophosphate dikinase
Chr5_-_7373259 0.27 AT5G22270.1
AT5G22270
hypothetical protein
Chr4_-_9697578 0.27 AT4G17330.3
AT4G17330.1
AT4G17330.2
G2484-1
G2484-1 protein
Chr3_+_8918267 0.27 AT3G24500.1
MBF1C
multiprotein bridging factor 1C
Chr3_+_17887996 0.27 AT3G48310.1
CYP71A22
cytochrome P450, family 71, subfamily A, polypeptide 22
Chr1_-_9935264 0.27 AT1G28330.3
AT1G28330.2
AT1G28330.4
AT1G28330.1
AT1G28330.6
AT1G28330.5
DYL1
dormancy-associated protein-like 1
Chr1_+_5885007 0.27 AT1G17220.1
FUG1
Translation initiation factor 2, small GTP-binding protein
Chr3_-_20272504 0.27 AT3G54760.2
AT3G54760.1
AT3G54760
dentin sialophosphoprotein-like protein
Chr5_+_5649057 0.27 AT5G17170.1
AT5G17170.2
ENH1
rubredoxin family protein
Chr4_+_8708841 0.27 AT4G15248.1
BBX30
B-box type zinc finger family protein
Chr3_+_8918679 0.27 AT3G24500.2
MBF1C
multiprotein bridging factor 1C
Chr4_+_14321807 0.27 AT4G29070.1
AT4G29070.2
AT4G29070
Phospholipase A2 family protein
Chr3_+_18935674 0.27 AT3G50950.1
AT3G50950.2
ZAR1
HOPZ-ACTIVATED RESISTANCE 1
Chr3_+_7946408 0.27 AT3G22420.4
AT3G22420.3
AT3G22420.5
AT3G22420.1
AT3G22420.2
AT3G22420.6
WNK2
with no lysine (K) kinase 2
Chr4_-_8854706 0.27 AT4G15490.1
UGT84A3
UDP-Glycosyltransferase superfamily protein
Chr5_-_20878464 0.26 AT5G51390.1
AT5G51390
hypothetical protein
Chr4_+_2505979 0.26 AT4G04925.1
AT4G04925
transmembrane protein
Chr5_-_20016857 0.26 AT5G49360.1
BXL1
beta-xylosidase 1
Chr5_-_23085246 0.26 AT5G57040.1
AT5G57040
Lactoylglutathione lyase / glyoxalase I family protein
Chr3_+_6876043 0.26 AT3G19800.1
AT3G19800.2
AT3G19800
E3 ubiquitin-protein ligase, putative (DUF177)
Chr5_-_22429495 0.26 AT5G55300.3
AT5G55300.2
AT5G55300.1
TOP1ALPHA
DNA topoisomerase I alpha
Chr3_+_4187371 0.26 AT3G13065.1
SRF4
STRUBBELIG-receptor family 4
Chr1_+_4688018 0.26 AT1G13670.1
AT1G13670
hypothetical protein
Chr5_+_26710302 0.26 AT5G66880.1
SNRK2.3
sucrose nonfermenting 1(SNF1)-related protein kinase 2.3
Chr3_-_6650199 0.26 AT3G19200.1
AT3G19200
hypothetical protein
Chr4_-_10647079 0.26 AT4G19520.1
AT4G19520.3
AT4G19520.2
AT4G19520.5
AT4G19520.4
AT4G19520
disease resistance protein (TIR-NBS-LRR class) family
Chr5_-_18026077 0.26 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
Chr1_+_25466935 0.26 AT1G67900.6
AT1G67900
Phototropic-responsive NPH3 family protein
Chr4_+_15202288 0.26 AT4G31330.1
AT4G31330
transmembrane protein, putative (Protein of unknown function, DUF599)
Chr1_-_25156389 0.26 AT1G67230.1
LINC1
little nuclei1
Chr3_-_5433851 0.26 AT3G16000.1
MFP1
MAR binding filament-like protein 1
Chr3_+_14676967 0.26 AT3G42556.1
AT3G42556

Chr4_-_16942060 0.26 AT4G35750.1
AT4G35750
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Chr4_+_8517100 0.26 AT4G14870.1
SECE1
secE/sec61-gamma protein transport protein
Chr1_+_16847684 0.26 AT1G44414.1
AT1G44414
zinc-ribbon domain protein
Chr5_+_2083964 0.26 AT5G06740.2
AT5G06740.1
AT5G06740
Concanavalin A-like lectin protein kinase family protein
Chr2_-_14778933 0.26 AT2G35060.4
AT2G35060.2
AT2G35060.3
AT2G35060.1
KUP11
K+ uptake permease 11
Chr5_+_7116687 0.26 AT5G20960.2
AO1
aldehyde oxidase 1
Chr3_-_20338598 0.26 AT3G54880.1
AT3G54880
zinc finger protein
Chr1_+_3161832 0.26 AT1G09770.1
CDC5
cell division cycle 5
Chr1_-_6757420 0.26 AT1G19510.1
RL5
RAD-like 5
Chr2_-_1032625 0.26 AT2G03390.6
AT2G03390.3
AT2G03390.2
AT2G03390.4
AT2G03390.7
AT2G03390.5
AT2G03390.1
AT2G03390
uvrB/uvrC motif-containing protein
Chr3_+_7067057 0.26 AT3G20270.4
AT3G20270.3
AT3G20270.5
AT3G20270.6
AT3G20270.1
AT3G20270.2
AT3G20270
lipid-binding serum glycoprotein family protein
Chr3_+_8142070 0.25 AT3G22961.1
AT3G22961
Paired amphipathic helix (PAH2) superfamily protein
Chr1_+_12977668 0.25 AT1G35340.4
AT1G35340.2
AT1G35340.1
AT1G35340.5
AT1G35340.3
AT1G35340.6
AT1G35340.7
AT1G35340
ATP-dependent protease La (LON) domain protein
Chr1_-_687315 0.25 AT1G02990.2
AT1G02990.1
AT1G02990.6
AT1G02990.3
AT1G02990.4
AT1G02990.5
AT1G02990
hypothetical protein
Chr5_+_7116455 0.25 AT5G20960.1
AO1
aldehyde oxidase 1
Chr4_-_14009287 0.25 AT4G28270.1
RMA2
RING membrane-anchor 2
Chr3_+_3249513 0.25 AT3G10450.3
AT3G10450.2
AT3G10450.1
AT3G10450.4
SCPL7
serine carboxypeptidase-like 7
Chr3_+_9353271 0.25 AT3G25690.1
CHUP1
Hydroxyproline-rich glycoprotein family protein
Chr5_+_8661970 0.25 AT5G25120.1
CYP71B11
cytochrome p450, family 71, subfamily B, polypeptide 11
Chr5_+_769438 0.25 AT5G03230.1
AT5G03230
senescence regulator (Protein of unknown function, DUF584)
Chr3_-_18684346 0.25 AT3G50370.1
AT3G50370.2
AT3G50370
hypothetical protein
Chr1_+_7143805 0.25 AT1G20620.7
CAT3
catalase 3
Chr5_-_22055443 0.25 AT5G54300.1
AT5G54300
cotton fiber-like protein (DUF761)
Chr2_-_18324561 0.25 AT2G44380.1
AT2G44380
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_17472984 0.25 AT2G41870.1
AT2G41870
Remorin family protein
Chr1_+_4794664 0.25 AT1G13990.1
AT1G13990.2
AT1G13990.3
AT1G13990
plant/protein
Chr1_+_10723454 0.25 AT1G30390.1
AT1G30390

Chr1_+_7142972 0.25 AT1G20620.1
AT1G20620.5
AT1G20620.2
AT1G20620.4
AT1G20620.6
CAT3
catalase 3
Chr4_+_10633619 0.25 AT4G19510.3
AT4G19510.4
AT4G19510.5
AT4G19510.6
AT4G19510.8
AT4G19510.7
AT4G19510.9
AT4G19510.1
AT4G19510.10
AT4G19510.2
AT4G19510
Disease resistance protein (TIR-NBS-LRR class)
Chr3_-_9646093 0.25 AT3G26320.1
CYP71B36
cytochrome P450, family 71, subfamily B, polypeptide 36
Chr4_-_6632641 0.25 AT4G10770.2
AT4G10770.1
OPT7
oligopeptide transporter 7
Chr1_+_5410908 0.25 AT1G15740.1
AT1G15740
Leucine-rich repeat family protein
Chr1_-_23429603 0.25 AT1G63180.2
AT1G63180.1
UGE3
UDP-D-glucose/UDP-D-galactose 4-epimerase 3
Chr1_+_27435306 0.25 AT1G72910.1
AT1G72910
Toll-Interleukin-Resistance (TIR) domain-containing protein
Chr2_-_19370478 0.25 AT2G47180.1
GolS1
galactinol synthase 1
Chr5_+_26710469 0.25 AT5G66880.2
SNRK2.3
sucrose nonfermenting 1(SNF1)-related protein kinase 2.3
Chr4_-_5932475 0.25 AT4G09350.1
NdhT
Chaperone DnaJ-domain superfamily protein
Chr1_-_13900831 0.25 AT1G36730.1
AT1G36730
Translation initiation factor IF2/IF5
Chr2_-_11980003 0.25 AT2G28110.1
FRA8
Exostosin family protein
Chr2_+_14827360 0.25 AT2G35170.1
AT2G35170
Histone H3 K4-specific methyltransferase SET7/9 family protein
Chr1_+_24149208 0.25 AT1G65010.1
AT1G65010
WEB family protein (DUF827)
Chr2_-_18734341 0.25 AT2G45450.1
ZPR1
binding protein
Chr3_-_3235289 0.25 AT3G10405.1
AT3G10405
vacuolar acid trehalase

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G01540

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0010203 response to very low fluence red light stimulus(GO:0010203)
0.2 0.2 GO:0007063 regulation of sister chromatid cohesion(GO:0007063)
0.2 0.5 GO:0018119 protein nitrosylation(GO:0017014) peptidyl-cysteine S-nitrosylation(GO:0018119) peptidyl-cysteine S-trans-nitrosylation(GO:0035606)
0.1 1.1 GO:0031936 nucleosome positioning(GO:0016584) negative regulation of chromatin silencing(GO:0031936)
0.1 0.7 GO:1903792 negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960)
0.1 0.4 GO:0090392 sepal giant cell differentiation(GO:0090392)
0.1 0.3 GO:0006057 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506)
0.1 0.6 GO:1904589 regulation of protein import(GO:1904589)
0.1 0.9 GO:0009061 anaerobic respiration(GO:0009061)
0.1 0.4 GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process(GO:0046901)
0.1 0.3 GO:0051639 actin filament network formation(GO:0051639)
0.1 0.4 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.1 0.4 GO:0006741 NADP biosynthetic process(GO:0006741)
0.1 0.3 GO:0033259 plastid DNA metabolic process(GO:0033258) plastid DNA replication(GO:0033259)
0.1 0.3 GO:0033120 positive regulation of RNA splicing(GO:0033120)
0.1 0.2 GO:1901333 positive regulation of lateral root development(GO:1901333)
0.1 0.6 GO:0017006 protein-tetrapyrrole linkage(GO:0017006)
0.1 0.5 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.1 0.4 GO:0022615 protein import into peroxisome matrix, docking(GO:0016560) protein to membrane docking(GO:0022615)
0.1 0.5 GO:0000395 mRNA 5'-splice site recognition(GO:0000395)
0.1 0.3 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.1 0.5 GO:0015919 peroxisomal membrane transport(GO:0015919)
0.1 0.4 GO:1902418 (+)-abscisic acid D-glucopyranosyl ester transmembrane transport(GO:1902418)
0.1 0.3 GO:0034720 histone H3-K4 demethylation(GO:0034720)
0.1 0.8 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.1 0.3 GO:0032988 ribonucleoprotein complex disassembly(GO:0032988)
0.1 0.3 GO:0016099 monoterpenoid metabolic process(GO:0016098) monoterpenoid biosynthetic process(GO:0016099)
0.1 0.3 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.1 0.3 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 0.4 GO:0019419 sulfate reduction(GO:0019419)
0.1 0.3 GO:0071836 nectar secretion(GO:0071836)
0.1 0.4 GO:0001732 formation of cytoplasmic translation initiation complex(GO:0001732)
0.1 0.5 GO:0090059 protoxylem development(GO:0090059)
0.1 0.2 GO:0000050 urea cycle(GO:0000050)
0.1 0.3 GO:0090069 regulation of ribosome biogenesis(GO:0090069)
0.1 0.2 GO:0072526 pyridoxal metabolic process(GO:0042817) pyridine-containing compound catabolic process(GO:0072526)
0.1 0.4 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.1 0.4 GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly(GO:0010258)
0.1 0.1 GO:0009747 hexokinase-dependent signaling(GO:0009747)
0.1 0.2 GO:0060967 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.1 0.6 GO:0015908 fatty acid transport(GO:0015908)
0.1 0.3 GO:0097298 regulation of nucleus size(GO:0097298)
0.1 0.3 GO:0090065 regulation of production of siRNA involved in RNA interference(GO:0090065)
0.1 0.6 GO:0045736 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 0.2 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.1 0.3 GO:0009558 embryo sac cellularization(GO:0009558)
0.1 0.4 GO:0090436 leaf pavement cell development(GO:0090436)
0.1 0.2 GO:0080005 photosystem stoichiometry adjustment(GO:0080005)
0.1 0.2 GO:0006182 cGMP biosynthetic process(GO:0006182) cGMP metabolic process(GO:0046068)
0.1 0.5 GO:0043266 regulation of potassium ion transport(GO:0043266)
0.1 0.1 GO:0040023 nuclear migration(GO:0007097) establishment of nucleus localization(GO:0040023) nucleus localization(GO:0051647)
0.1 0.2 GO:2000072 regulation of defense response to fungus, incompatible interaction(GO:2000072)
0.1 0.7 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.1 0.2 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.1 0.2 GO:0000349 generation of catalytic spliceosome for first transesterification step(GO:0000349)
0.1 0.4 GO:1901002 positive regulation of response to salt stress(GO:1901002)
0.1 0.1 GO:0043271 negative regulation of ion transport(GO:0043271)
0.1 0.7 GO:2000071 regulation of defense response by callose deposition(GO:2000071)
0.1 0.2 GO:0033530 raffinose metabolic process(GO:0033530)
0.1 0.2 GO:0019695 choline metabolic process(GO:0019695)
0.1 0.3 GO:1901535 regulation of DNA demethylation(GO:1901535)
0.1 0.2 GO:1901522 positive regulation of transcription from RNA polymerase II promoter involved in unfolded protein response(GO:0006990) positive regulation of transcription from RNA polymerase II promoter involved in cellular response to chemical stimulus(GO:1901522)
0.1 0.3 GO:0035335 peptidyl-tyrosine dephosphorylation(GO:0035335)
0.1 1.2 GO:0010207 photosystem II assembly(GO:0010207)
0.1 0.4 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.2 GO:2000082 regulation of L-ascorbic acid biosynthetic process(GO:2000082)
0.0 0.1 GO:0061014 positive regulation of mRNA catabolic process(GO:0061014) positive regulation of mRNA metabolic process(GO:1903313)
0.0 0.2 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.0 0.5 GO:0009970 cellular response to sulfate starvation(GO:0009970)
0.0 0.2 GO:0072502 cellular phosphate ion homeostasis(GO:0030643) cellular trivalent inorganic anion homeostasis(GO:0072502)
0.0 0.3 GO:0060969 negative regulation of gene silencing(GO:0060969)
0.0 1.5 GO:0009902 chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667)
0.0 0.2 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.0 0.1 GO:0070922 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
0.0 0.2 GO:0018023 peptidyl-lysine trimethylation(GO:0018023)
0.0 0.2 GO:0080026 response to indolebutyric acid(GO:0080026)
0.0 0.7 GO:0048496 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.1 GO:0072388 FAD biosynthetic process(GO:0006747) flavin adenine dinucleotide biosynthetic process(GO:0072388)
0.0 0.3 GO:0010236 plastoquinone biosynthetic process(GO:0010236)
0.0 0.3 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.0 0.3 GO:0060866 leaf abscission(GO:0060866)
0.0 0.1 GO:0010343 singlet oxygen-mediated programmed cell death(GO:0010343)
0.0 1.9 GO:0019759 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.0 0.2 GO:0010618 aerenchyma formation(GO:0010618)
0.0 0.1 GO:0034471 rRNA 5'-end processing(GO:0000967) ncRNA 5'-end processing(GO:0034471)
0.0 0.6 GO:0001676 long-chain fatty acid metabolic process(GO:0001676)
0.0 0.1 GO:1900459 positive regulation of brassinosteroid mediated signaling pathway(GO:1900459)
0.0 0.4 GO:0010188 response to microbial phytotoxin(GO:0010188)
0.0 0.1 GO:1990116 ribosome-associated ubiquitin-dependent protein catabolic process(GO:1990116)
0.0 0.4 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.0 0.2 GO:0015720 allantoin transport(GO:0015720)
0.0 0.2 GO:0060261 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.0 0.0 GO:0050878 regulation of body fluid levels(GO:0050878) multicellular organismal water homeostasis(GO:0050891)
0.0 0.2 GO:0060966 regulation of gene silencing by RNA(GO:0060966)
0.0 0.4 GO:0046685 response to arsenic-containing substance(GO:0046685)
0.0 0.2 GO:1902916 regulation of protein polyubiquitination(GO:1902914) positive regulation of protein polyubiquitination(GO:1902916)
0.0 0.1 GO:0006210 thymine catabolic process(GO:0006210) thymine metabolic process(GO:0019859)
0.0 0.1 GO:0045827 negative regulation of isoprenoid metabolic process(GO:0045827)
0.0 0.1 GO:0030031 cell projection organization(GO:0030030) cell projection assembly(GO:0030031)
0.0 0.1 GO:0061013 regulation of mRNA catabolic process(GO:0061013)
0.0 0.4 GO:0042814 monopolar cell growth(GO:0042814)
0.0 0.1 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.0 0.5 GO:0042793 transcription from plastid promoter(GO:0042793)
0.0 0.1 GO:1903513 retrograde protein transport, ER to cytosol(GO:0030970) endoplasmic reticulum to cytosol transport(GO:1903513)
0.0 0.2 GO:0015969 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.0 0.4 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.0 0.1 GO:0071494 cellular response to UV-C(GO:0071494)
0.0 0.2 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.0 0.6 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.0 0.2 GO:0043570 maintenance of DNA repeat elements(GO:0043570)
0.0 0.2 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.0 0.2 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.0 0.2 GO:0060148 positive regulation of posttranscriptional gene silencing(GO:0060148)
0.0 0.2 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
0.0 0.2 GO:0051329 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.0 0.6 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.0 0.1 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.0 0.1 GO:0051055 negative regulation of lipid biosynthetic process(GO:0051055)
0.0 0.1 GO:1901601 lactone metabolic process(GO:1901334) lactone biosynthetic process(GO:1901336) strigolactone metabolic process(GO:1901600) strigolactone biosynthetic process(GO:1901601)
0.0 0.1 GO:0010495 long-distance posttranscriptional gene silencing(GO:0010495)
0.0 0.2 GO:0048439 flower morphogenesis(GO:0048439)
0.0 0.2 GO:0043247 telomere maintenance in response to DNA damage(GO:0043247)
0.0 0.1 GO:0010184 cytokinin transport(GO:0010184)
0.0 0.1 GO:0045948 positive regulation of translational initiation(GO:0045948)
0.0 0.3 GO:0042659 regulation of cell fate specification(GO:0042659)
0.0 0.3 GO:0010601 positive regulation of auxin biosynthetic process(GO:0010601)
0.0 0.2 GO:0010019 chloroplast-nucleus signaling pathway(GO:0010019)
0.0 0.1 GO:0015669 gas transport(GO:0015669)
0.0 0.2 GO:0031116 microtubule bundle formation(GO:0001578) positive regulation of microtubule polymerization(GO:0031116)
0.0 0.2 GO:0051127 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.0 0.1 GO:0051601 exocyst localization(GO:0051601)
0.0 0.2 GO:0010508 positive regulation of autophagy(GO:0010508)
0.0 0.2 GO:0006021 inositol biosynthetic process(GO:0006021)
0.0 0.2 GO:0010321 regulation of vegetative phase change(GO:0010321)
0.0 0.1 GO:0006436 tryptophanyl-tRNA aminoacylation(GO:0006436)
0.0 0.4 GO:0071331 cellular response to monosaccharide stimulus(GO:0071326) cellular response to hexose stimulus(GO:0071331)
0.0 0.3 GO:0031221 arabinan metabolic process(GO:0031221)
0.0 0.3 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.0 0.1 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.0 0.2 GO:0009957 epidermal cell fate specification(GO:0009957)
0.0 0.1 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.0 0.1 GO:0010239 chloroplast mRNA processing(GO:0010239)
0.0 0.1 GO:0010198 synergid death(GO:0010198)
0.0 0.5 GO:0000373 Group II intron splicing(GO:0000373)
0.0 0.1 GO:0010271 regulation of chlorophyll catabolic process(GO:0010271) regulation of tetrapyrrole catabolic process(GO:1901404)
0.0 0.2 GO:0006570 tyrosine metabolic process(GO:0006570)
0.0 0.1 GO:0015939 pantothenate metabolic process(GO:0015939) pantothenate biosynthetic process(GO:0015940)
0.0 0.2 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.0 0.3 GO:0018107 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.0 0.3 GO:0045227 UDP-L-arabinose biosynthetic process(GO:0033358) extracellular polysaccharide biosynthetic process(GO:0045226) capsule polysaccharide biosynthetic process(GO:0045227) capsule organization(GO:0045230) extracellular polysaccharide metabolic process(GO:0046379)
0.0 0.3 GO:0016559 peroxisome fission(GO:0016559)
0.0 0.2 GO:0009854 oxidative photosynthetic carbon pathway(GO:0009854)
0.0 0.2 GO:0009078 alanine metabolic process(GO:0006522) alanine catabolic process(GO:0006524) pyruvate family amino acid metabolic process(GO:0009078) pyruvate family amino acid catabolic process(GO:0009080) L-alanine metabolic process(GO:0042851) L-alanine catabolic process(GO:0042853)
0.0 0.1 GO:0030856 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
0.0 1.1 GO:0043562 cellular response to nitrogen levels(GO:0043562)
0.0 0.2 GO:0034059 response to anoxia(GO:0034059)
0.0 0.1 GO:0034982 mitochondrial protein processing(GO:0034982) cristae formation(GO:0042407)
0.0 0.1 GO:1990428 miRNA transport(GO:1990428)
0.0 0.2 GO:0009410 response to xenobiotic stimulus(GO:0009410)
0.0 0.2 GO:0006491 N-glycan processing(GO:0006491)
0.0 0.1 GO:0006307 DNA dealkylation involved in DNA repair(GO:0006307)
0.0 0.2 GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly(GO:0070072)
0.0 0.1 GO:0009093 cysteine catabolic process(GO:0009093)
0.0 0.0 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)
0.0 0.1 GO:0070525 tRNA threonylcarbamoyladenosine metabolic process(GO:0070525)
0.0 0.2 GO:0006598 polyamine catabolic process(GO:0006598)
0.0 0.0 GO:0015857 pyrimidine nucleobase transport(GO:0015855) uracil transport(GO:0015857)
0.0 0.1 GO:1903321 negative regulation of protein modification by small protein conjugation or removal(GO:1903321)
0.0 0.1 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.0 0.1 GO:0009099 valine biosynthetic process(GO:0009099)
0.0 0.1 GO:0033169 histone H3-K9 demethylation(GO:0033169)
0.0 0.1 GO:0006427 histidyl-tRNA aminoacylation(GO:0006427)
0.0 0.1 GO:0035494 SNARE complex disassembly(GO:0035494)
0.0 0.4 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.3 GO:0006771 riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231) flavin-containing compound biosynthetic process(GO:0042727)
0.0 0.1 GO:0043171 peptide catabolic process(GO:0043171)
0.0 0.4 GO:0006538 glutamate catabolic process(GO:0006538)
0.0 0.7 GO:0016575 histone deacetylation(GO:0016575)
0.0 0.4 GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862)
0.0 0.1 GO:0006013 mannose metabolic process(GO:0006013)
0.0 0.1 GO:1901672 positive regulation of systemic acquired resistance(GO:1901672)
0.0 0.1 GO:0009772 photosynthetic electron transport in photosystem II(GO:0009772)
0.0 0.1 GO:0034497 protein localization to pre-autophagosomal structure(GO:0034497)
0.0 0.1 GO:2000067 regulation of root morphogenesis(GO:2000067)
0.0 0.9 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 0.7 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.4 GO:1901401 regulation of tetrapyrrole metabolic process(GO:1901401)
0.0 0.1 GO:0042391 regulation of membrane potential(GO:0042391)
0.0 0.2 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.0 0.2 GO:0009942 longitudinal axis specification(GO:0009942)
0.0 0.1 GO:0000012 single strand break repair(GO:0000012)
0.0 0.1 GO:0051014 actin filament severing(GO:0051014)
0.0 1.2 GO:0009694 jasmonic acid metabolic process(GO:0009694)
0.0 0.4 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.0 0.1 GO:0046499 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.0 0.7 GO:0032784 regulation of DNA-templated transcription, elongation(GO:0032784)
0.0 0.1 GO:0006624 vacuolar protein processing(GO:0006624)
0.0 0.1 GO:0000290 deadenylation-dependent decapping of nuclear-transcribed mRNA(GO:0000290)
0.0 0.2 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.1 GO:1901656 glycoside transport(GO:1901656)
0.0 0.1 GO:0050792 regulation of viral process(GO:0050792)
0.0 0.2 GO:0010375 stomatal complex patterning(GO:0010375)
0.0 0.1 GO:0030104 water homeostasis(GO:0030104)
0.0 0.1 GO:0015074 nucleotide-excision repair, DNA gap filling(GO:0006297) DNA integration(GO:0015074)
0.0 0.8 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.0 0.3 GO:0009750 response to fructose(GO:0009750)
0.0 0.1 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.1 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.0 0.2 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 0.7 GO:0000413 protein peptidyl-prolyl isomerization(GO:0000413)
0.0 0.2 GO:0051123 RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123)
0.0 0.1 GO:0051289 protein homotetramerization(GO:0051289)
0.0 0.1 GO:0035493 SNARE complex assembly(GO:0035493)
0.0 0.2 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.1 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.0 0.1 GO:0016553 base conversion or substitution editing(GO:0016553) cytidine to uridine editing(GO:0016554)
0.0 0.1 GO:0046506 sulfolipid metabolic process(GO:0046505) sulfolipid biosynthetic process(GO:0046506)
0.0 0.3 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.2 GO:0010205 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155) negative regulation of photosynthesis(GO:1905156)
0.0 0.1 GO:1902065 response to L-glutamate(GO:1902065)
0.0 0.2 GO:0005978 glycogen biosynthetic process(GO:0005978)
0.0 0.2 GO:0045493 xylan catabolic process(GO:0045493)
0.0 0.1 GO:0080190 lateral growth(GO:0080190)
0.0 0.5 GO:0006613 cotranslational protein targeting to membrane(GO:0006613) SRP-dependent cotranslational protein targeting to membrane(GO:0006614)
0.0 0.9 GO:0006338 chromatin remodeling(GO:0006338)
0.0 0.1 GO:0010067 procambium histogenesis(GO:0010067)
0.0 0.1 GO:0051176 positive regulation of sulfur metabolic process(GO:0051176)
0.0 0.1 GO:0009298 GDP-mannose biosynthetic process(GO:0009298)
0.0 0.1 GO:0048577 negative regulation of short-day photoperiodism, flowering(GO:0048577)
0.0 0.1 GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000479)
0.0 0.2 GO:0036065 fucosylation(GO:0036065)
0.0 0.1 GO:0010226 response to lithium ion(GO:0010226)
0.0 0.1 GO:1902626 assembly of large subunit precursor of preribosome(GO:1902626)
0.0 0.3 GO:0010020 chloroplast fission(GO:0010020) plastid fission(GO:0043572)
0.0 0.2 GO:0015865 purine nucleotide transport(GO:0015865)
0.0 0.0 GO:0071323 cellular response to chitin(GO:0071323)
0.0 0.0 GO:0034067 protein localization to Golgi apparatus(GO:0034067)
0.0 0.2 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.0 0.2 GO:0009089 lysine biosynthetic process via diaminopimelate(GO:0009089) diaminopimelate metabolic process(GO:0046451)
0.0 0.2 GO:0009585 phototransduction(GO:0007602) detection of light stimulus(GO:0009583) red, far-red light phototransduction(GO:0009585)
0.0 0.1 GO:0001682 tRNA 5'-leader removal(GO:0001682)
0.0 0.0 GO:0006386 termination of RNA polymerase III transcription(GO:0006386)
0.0 0.3 GO:0061157 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 0.0 GO:0010432 bract development(GO:0010432)
0.0 0.1 GO:0010088 phloem development(GO:0010088)
0.0 0.0 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599)
0.0 0.1 GO:0051294 establishment of mitotic spindle orientation(GO:0000132) establishment of mitotic spindle localization(GO:0040001) establishment of spindle localization(GO:0051293) establishment of spindle orientation(GO:0051294) spindle localization(GO:0051653)
0.0 0.1 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.1 GO:0006481 C-terminal protein methylation(GO:0006481)
0.0 0.1 GO:0060321 acceptance of pollen(GO:0060321)
0.0 0.1 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.0 0.1 GO:0048209 regulation of vesicle targeting, to, from or within Golgi(GO:0048209)
0.0 0.2 GO:0006825 copper ion transport(GO:0006825)
0.0 0.1 GO:0072583 clathrin-mediated endocytosis(GO:0072583)
0.0 0.1 GO:1900457 regulation of brassinosteroid mediated signaling pathway(GO:1900457)
0.0 0.1 GO:0046621 negative regulation of organ growth(GO:0046621)
0.0 0.1 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.0 0.1 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.0 0.1 GO:0006216 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.0 0.5 GO:0006475 internal protein amino acid acetylation(GO:0006475) histone acetylation(GO:0016573) internal peptidyl-lysine acetylation(GO:0018393) peptidyl-lysine acetylation(GO:0018394)
0.0 0.1 GO:0010098 suspensor development(GO:0010098)
0.0 0.0 GO:0071569 protein ufmylation(GO:0071569)
0.0 0.1 GO:0009649 entrainment of circadian clock(GO:0009649)
0.0 0.2 GO:0001709 cell fate determination(GO:0001709)
0.0 0.1 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.0 0.4 GO:0048571 long-day photoperiodism(GO:0048571)
0.0 0.1 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.0 0.1 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.0 0.1 GO:0070370 cellular heat acclimation(GO:0070370)
0.0 0.0 GO:0033306 phytol metabolic process(GO:0033306)
0.0 0.1 GO:0015965 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.0 0.0 GO:0071481 cellular response to X-ray(GO:0071481)
0.0 0.1 GO:1901271 lipid A biosynthetic process(GO:0009245) lipid A metabolic process(GO:0046493) lipooligosaccharide metabolic process(GO:1901269) lipooligosaccharide biosynthetic process(GO:1901271)
0.0 0.1 GO:0015804 neutral amino acid transport(GO:0015804)
0.0 0.6 GO:0090487 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.0 0.2 GO:0048015 phosphatidylinositol-mediated signaling(GO:0048015)
0.0 0.2 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.0 0.1 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.0 0.0 GO:0031573 intra-S DNA damage checkpoint(GO:0031573)
0.0 0.1 GO:0000719 photoreactive repair(GO:0000719)
0.0 0.1 GO:0016255 attachment of GPI anchor to protein(GO:0016255)
0.0 0.2 GO:0009306 protein secretion(GO:0009306)
0.0 0.2 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.0 0.3 GO:0046854 lipid phosphorylation(GO:0046834) phosphatidylinositol phosphorylation(GO:0046854)
0.0 0.5 GO:0006305 DNA alkylation(GO:0006305) DNA methylation(GO:0006306)
0.0 0.1 GO:0060968 regulation of gene silencing(GO:0060968)
0.0 0.1 GO:0090158 endoplasmic reticulum membrane organization(GO:0090158)
0.0 0.2 GO:0006857 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.1 GO:1990481 mRNA pseudouridine synthesis(GO:1990481)
0.0 0.1 GO:0016973 poly(A)+ mRNA export from nucleus(GO:0016973)
0.0 0.1 GO:0046482 para-aminobenzoic acid metabolic process(GO:0046482)
0.0 0.2 GO:0010109 regulation of photosynthesis(GO:0010109)
0.0 0.0 GO:0033591 response to L-ascorbic acid(GO:0033591)
0.0 0.2 GO:0019853 L-ascorbic acid biosynthetic process(GO:0019853)
0.0 0.1 GO:0016109 tetraterpenoid biosynthetic process(GO:0016109) carotenoid biosynthetic process(GO:0016117)
0.0 0.1 GO:0051571 positive regulation of histone H3-K4 methylation(GO:0051571)
0.0 0.1 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.0 0.1 GO:0080120 CAAX-box protein processing(GO:0071586) CAAX-box protein maturation(GO:0080120)
0.0 0.1 GO:0035435 phosphate ion transmembrane transport(GO:0035435)
0.0 0.3 GO:0031497 chromatin assembly(GO:0031497)
0.0 0.2 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.1 GO:0051205 protein insertion into membrane(GO:0051205)
0.0 0.0 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.0 0.2 GO:0010082 regulation of root meristem growth(GO:0010082)
0.0 0.5 GO:0051085 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.0 0.0 GO:0008295 spermidine biosynthetic process(GO:0008295)
0.0 0.2 GO:0019432 triglyceride biosynthetic process(GO:0019432)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 GO:0032432 actin filament bundle(GO:0032432)
0.1 1.2 GO:0000786 nucleosome(GO:0000786)
0.1 0.3 GO:0005652 nuclear lamina(GO:0005652)
0.1 0.2 GO:0035101 FACT complex(GO:0035101)
0.1 0.2 GO:0005785 signal recognition particle receptor complex(GO:0005785)
0.1 0.4 GO:0010007 magnesium chelatase complex(GO:0010007)
0.1 0.2 GO:0060293 P granule(GO:0043186) pole plasm(GO:0045495) germ plasm(GO:0060293)
0.1 0.2 GO:0030132 clathrin coat of coated pit(GO:0030132)
0.1 0.2 GO:0009509 chromoplast(GO:0009509)
0.1 0.4 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 0.3 GO:0000153 cytoplasmic ubiquitin ligase complex(GO:0000153)
0.0 0.8 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.0 0.2 GO:0001673 male germ cell nucleus(GO:0001673)
0.0 0.2 GO:0032044 DSIF complex(GO:0032044)
0.0 0.1 GO:0005775 vacuolar lumen(GO:0005775)
0.0 0.2 GO:0005782 peroxisomal matrix(GO:0005782) microbody lumen(GO:0031907)
0.0 0.1 GO:1990112 RQC complex(GO:1990112)
0.0 0.3 GO:0043189 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.0 0.8 GO:0009986 cell surface(GO:0009986)
0.0 0.3 GO:0031379 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.0 0.1 GO:0051233 spindle midzone(GO:0051233)
0.0 0.3 GO:0009840 chloroplastic endopeptidase Clp complex(GO:0009840)
0.0 0.4 GO:0048226 Casparian strip(GO:0048226)
0.0 0.2 GO:0071006 U2-type catalytic step 1 spliceosome(GO:0071006) catalytic step 1 spliceosome(GO:0071012)
0.0 0.2 GO:0000408 EKC/KEOPS complex(GO:0000408)
0.0 0.1 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.0 0.7 GO:0010319 stromule(GO:0010319)
0.0 0.6 GO:0097346 INO80-type complex(GO:0097346)
0.0 0.2 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.0 0.3 GO:0070390 transcription export complex 2(GO:0070390)
0.0 0.3 GO:0090544 SWI/SNF complex(GO:0016514) BAF-type complex(GO:0090544)
0.0 0.2 GO:0031298 replication fork protection complex(GO:0031298)
0.0 0.1 GO:0005674 transcription factor TFIIF complex(GO:0005674)
0.0 0.4 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 0.3 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.4 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.0 0.0 GO:0031357 intrinsic component of plastid inner membrane(GO:0031352) integral component of plastid inner membrane(GO:0031353) intrinsic component of chloroplast inner membrane(GO:0031356) integral component of chloroplast inner membrane(GO:0031357)
0.0 0.2 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.0 0.3 GO:0016272 prefoldin complex(GO:0016272)
0.0 0.3 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.6 GO:0000229 cytoplasmic chromosome(GO:0000229) plastid chromosome(GO:0009508)
0.0 0.2 GO:0016363 nuclear matrix(GO:0016363)
0.0 0.9 GO:0031903 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.0 0.1 GO:0005884 actin filament(GO:0005884)
0.0 0.1 GO:0032807 DNA ligase IV complex(GO:0032807)
0.0 0.1 GO:0009360 DNA polymerase III complex(GO:0009360)
0.0 0.1 GO:0034272 phosphatidylinositol 3-kinase complex(GO:0005942) phosphatidylinositol 3-kinase complex, class III, type I(GO:0034271) phosphatidylinositol 3-kinase complex, class III, type II(GO:0034272) phosphatidylinositol 3-kinase complex, class III(GO:0035032)
0.0 0.2 GO:0031371 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.0 0.2 GO:0000243 commitment complex(GO:0000243)
0.0 0.4 GO:0035097 histone methyltransferase complex(GO:0035097)
0.0 0.1 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.0 0.2 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.0 0.1 GO:0031932 TORC2 complex(GO:0031932)
0.0 0.1 GO:0005960 glycine cleavage complex(GO:0005960)
0.0 0.3 GO:0030125 clathrin vesicle coat(GO:0030125)
0.0 0.5 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.5 GO:0009654 photosystem II oxygen evolving complex(GO:0009654)
0.0 0.1 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.0 0.1 GO:0009538 photosystem I reaction center(GO:0009538)
0.0 0.1 GO:0044815 DNA packaging complex(GO:0044815)
0.0 0.4 GO:0042646 plastid nucleoid(GO:0042646)
0.0 0.2 GO:0005801 cis-Golgi network(GO:0005801)
0.0 0.4 GO:0005669 transcription factor TFIID complex(GO:0005669)
0.0 0.1 GO:0034045 pre-autophagosomal structure membrane(GO:0034045)
0.0 0.9 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.1 GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)(GO:0045261)
0.0 0.1 GO:0070505 pollen coat(GO:0070505)
0.0 0.1 GO:0030062 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.0 0.1 GO:0043036 chloroplast starch grain(GO:0009569) starch grain(GO:0043036)
0.0 0.1 GO:0018444 translation release factor complex(GO:0018444)
0.0 0.3 GO:0005871 kinesin complex(GO:0005871)
0.0 0.4 GO:0005875 microtubule associated complex(GO:0005875)
0.0 0.5 GO:0009504 cell plate(GO:0009504)
0.0 0.1 GO:0032806 holo TFIIH complex(GO:0005675) carboxy-terminal domain protein kinase complex(GO:0032806)
0.0 0.0 GO:0030681 nucleolar ribonuclease P complex(GO:0005655) multimeric ribonuclease P complex(GO:0030681)
0.0 4.3 GO:0009534 chloroplast thylakoid(GO:0009534)
0.0 0.1 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.0 0.1 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.0 3.5 GO:0042579 peroxisome(GO:0005777) microbody(GO:0042579)
0.0 0.0 GO:0005719 nuclear euchromatin(GO:0005719)
0.0 1.2 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.1 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 0.1 GO:0033263 CORVET complex(GO:0033263)
0.0 0.0 GO:0043614 multi-eIF complex(GO:0043614)
0.0 0.1 GO:0000124 SAGA complex(GO:0000124)
0.0 0.1 GO:0000123 histone acetyltransferase complex(GO:0000123)
0.0 0.1 GO:0005844 polysome(GO:0005844)
0.0 0.1 GO:0008278 cohesin complex(GO:0008278)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 GO:0031492 nucleosomal DNA binding(GO:0031492)
0.2 0.6 GO:0050502 trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502)
0.2 0.5 GO:0035605 peptidyl-cysteine S-nitrosylase activity(GO:0035605)
0.2 0.6 GO:0031516 far-red light photoreceptor activity(GO:0031516)
0.1 1.1 GO:0016987 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.1 0.5 GO:0052596 tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596)
0.1 0.4 GO:0046524 sucrose-phosphate synthase activity(GO:0046524)
0.1 0.3 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.1 1.2 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.1 0.4 GO:1990269 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.1 0.3 GO:0016041 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.1 0.4 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.1 0.6 GO:0004848 ureidoglycolate hydrolase activity(GO:0004848)
0.1 0.4 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.1 0.6 GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity(GO:0004021) alanine-oxo-acid transaminase activity(GO:0047635)
0.1 0.4 GO:0033741 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.1 0.6 GO:0004096 catalase activity(GO:0004096)
0.1 0.4 GO:0004075 biotin carboxylase activity(GO:0004075)
0.1 0.4 GO:0004326 tetrahydrofolylpolyglutamate synthase activity(GO:0004326)
0.1 0.1 GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase(GO:0008839)
0.1 0.3 GO:0047782 coniferin beta-glucosidase activity(GO:0047782)
0.1 0.4 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.1 0.2 GO:0070678 preprotein binding(GO:0070678)
0.1 0.3 GO:0000268 peroxisome targeting sequence binding(GO:0000268)
0.1 0.7 GO:0009882 blue light photoreceptor activity(GO:0009882)
0.1 0.5 GO:0004567 beta-mannosidase activity(GO:0004567)
0.1 0.2 GO:0016642 glycine dehydrogenase (decarboxylating) activity(GO:0004375) oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor(GO:0016642)
0.1 0.1 GO:0009883 red or far-red light photoreceptor activity(GO:0009883)
0.1 0.2 GO:0043425 bHLH transcription factor binding(GO:0043425)
0.1 0.5 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.1 0.1 GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547)
0.1 0.2 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.1 0.3 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.1 0.6 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.1 0.4 GO:0016851 magnesium chelatase activity(GO:0016851) ligase activity, forming nitrogen-metal bonds(GO:0051002) ligase activity, forming nitrogen-metal bonds, forming coordination complexes(GO:0051003)
0.1 0.2 GO:0019904 protein domain specific binding(GO:0019904)
0.1 0.4 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.1 2.3 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 0.5 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 0.3 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.1 0.2 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.1 0.2 GO:0035671 enone reductase activity(GO:0035671)
0.1 0.3 GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity(GO:0003857)
0.1 0.4 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.1 0.6 GO:0004860 protein kinase inhibitor activity(GO:0004860)
0.1 0.5 GO:0000285 1-phosphatidylinositol-3-phosphate 5-kinase activity(GO:0000285)
0.1 0.2 GO:0070402 NADPH binding(GO:0070402)
0.1 0.2 GO:0070401 NADP+ binding(GO:0070401)
0.1 0.2 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.1 0.3 GO:0000062 fatty-acyl-CoA binding(GO:0000062)
0.1 0.3 GO:0016885 CoA carboxylase activity(GO:0016421) ligase activity, forming carbon-carbon bonds(GO:0016885)
0.1 0.5 GO:0015197 peptide transporter activity(GO:0015197) oligopeptide transporter activity(GO:0015198)
0.1 0.7 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.1 0.4 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.1 0.1 GO:0050284 sinapate 1-glucosyltransferase activity(GO:0050284)
0.0 0.2 GO:0015245 fatty acid transporter activity(GO:0015245)
0.0 0.1 GO:0008330 protein tyrosine/threonine phosphatase activity(GO:0008330)
0.0 0.1 GO:0004557 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.0 0.1 GO:0046480 galactolipid galactosyltransferase activity(GO:0046480)
0.0 0.2 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.0 0.3 GO:0050551 myrcene synthase activity(GO:0050551)
0.0 0.3 GO:0008239 dipeptidyl-peptidase activity(GO:0008239)
0.0 0.2 GO:0047517 galactosylgalactosylxylosylprotein 3-beta-glucuronosyltransferase activity(GO:0015018) 1,4-beta-D-xylan synthase activity(GO:0047517)
0.0 0.1 GO:0008442 3-hydroxyisobutyrate dehydrogenase activity(GO:0008442)
0.0 0.5 GO:0034647 histone demethylase activity(GO:0032452) histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647)
0.0 0.1 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.0 0.2 GO:0004181 metallocarboxypeptidase activity(GO:0004181)
0.0 0.1 GO:0032131 alkylated DNA binding(GO:0032131)
0.0 0.1 GO:0005344 oxygen transporter activity(GO:0005344)
0.0 2.1 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.1 GO:0008909 isochorismate synthase activity(GO:0008909)
0.0 0.2 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.0 0.3 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 0.1 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.0 0.2 GO:0003919 FMN adenylyltransferase activity(GO:0003919)
0.0 0.2 GO:0003959 NADPH dehydrogenase activity(GO:0003959)
0.0 1.8 GO:0003713 transcription coactivator activity(GO:0003713)
0.0 0.1 GO:0045485 omega-6 fatty acid desaturase activity(GO:0045485)
0.0 0.4 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.2 GO:0008905 mannose-phosphate guanylyltransferase activity(GO:0008905)
0.0 0.2 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.0 0.4 GO:0004351 glutamate decarboxylase activity(GO:0004351)
0.0 0.2 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.1 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.0 0.3 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.0 0.2 GO:0005047 signal recognition particle binding(GO:0005047)
0.0 0.6 GO:0004673 protein histidine kinase activity(GO:0004673) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775)
0.0 0.1 GO:0010242 oxygen evolving activity(GO:0010242)
0.0 0.3 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 0.7 GO:0080031 methyl salicylate esterase activity(GO:0080031) methyl jasmonate esterase activity(GO:0080032)
0.0 0.2 GO:0052658 inositol-1,4,5-trisphosphate 5-phosphatase activity(GO:0052658)
0.0 0.4 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.0 0.1 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.0 0.3 GO:0005092 GDP-dissociation inhibitor activity(GO:0005092)
0.0 0.1 GO:0004046 aminoacylase activity(GO:0004046)
0.0 0.2 GO:0071933 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.0 0.1 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.1 GO:0050302 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.0 0.2 GO:0052853 very-long-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052852) long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity(GO:0052853) medium-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052854)
0.0 0.1 GO:0004830 tryptophan-tRNA ligase activity(GO:0004830)
0.0 0.6 GO:0003887 DNA-directed DNA polymerase activity(GO:0003887)
0.0 0.3 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.0 0.3 GO:0070300 phosphatidic acid binding(GO:0070300)
0.0 0.2 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.0 0.2 GO:0016531 copper chaperone activity(GO:0016531)
0.0 0.1 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.0 0.4 GO:0030674 protein binding, bridging(GO:0030674)
0.0 0.1 GO:0035197 siRNA binding(GO:0035197)
0.0 0.2 GO:0080025 phosphatidylinositol-3,5-bisphosphate binding(GO:0080025)
0.0 0.2 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.0 0.3 GO:0050373 UDP-arabinose 4-epimerase activity(GO:0050373)
0.0 0.2 GO:0015505 allantoin uptake transmembrane transporter activity(GO:0005274) uracil:cation symporter activity(GO:0015505) uptake transmembrane transporter activity(GO:0015563)
0.0 0.1 GO:0052640 salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640)
0.0 0.2 GO:0030544 Hsp70 protein binding(GO:0030544)
0.0 0.1 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.0 0.3 GO:0016849 phosphorus-oxygen lyase activity(GO:0016849)
0.0 0.3 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.0 0.4 GO:0052742 phosphatidylinositol kinase activity(GO:0052742)
0.0 0.3 GO:0046556 alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.2 GO:0046592 polyamine oxidase activity(GO:0046592)
0.0 0.0 GO:0015210 pyrimidine nucleobase transmembrane transporter activity(GO:0005350) uracil transmembrane transporter activity(GO:0015210)
0.0 0.2 GO:0048256 flap endonuclease activity(GO:0048256)
0.0 0.3 GO:0016307 phosphatidylinositol phosphate kinase activity(GO:0016307)
0.0 0.1 GO:0004821 histidine-tRNA ligase activity(GO:0004821)
0.0 0.1 GO:0047714 galactolipase activity(GO:0047714)
0.0 2.2 GO:0051015 actin filament binding(GO:0051015)
0.0 0.1 GO:0035312 5'-3' exodeoxyribonuclease activity(GO:0035312)
0.0 0.3 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.0 0.2 GO:0004177 aminopeptidase activity(GO:0004177)
0.0 0.3 GO:0031491 nucleosome binding(GO:0031491)
0.0 0.2 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.0 0.2 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.1 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.1 GO:0080046 quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.0 0.9 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.1 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.0 0.1 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.0 0.3 GO:0102391 decanoate--CoA ligase activity(GO:0102391)
0.0 0.4 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.0 3.4 GO:0043531 ADP binding(GO:0043531)
0.0 0.6 GO:0051087 chaperone binding(GO:0051087)
0.0 0.1 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.0 1.8 GO:0003712 transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712)
0.0 0.8 GO:0003779 actin binding(GO:0003779)
0.0 0.0 GO:0046593 mandelonitrile lyase activity(GO:0046593)
0.0 0.3 GO:0003951 NAD+ kinase activity(GO:0003951)
0.0 0.2 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.2 GO:0019158 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.1 GO:0017070 U6 snRNA binding(GO:0017070)
0.0 0.1 GO:0019788 NEDD8 transferase activity(GO:0019788)
0.0 0.2 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.0 0.1 GO:0019156 isoamylase activity(GO:0019156)
0.0 0.2 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.1 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.0 0.2 GO:0016688 L-ascorbate peroxidase activity(GO:0016688)
0.0 0.3 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.0 0.4 GO:0030276 clathrin binding(GO:0030276)
0.0 0.1 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.0 0.9 GO:0005451 monovalent cation:proton antiporter activity(GO:0005451)
0.0 0.1 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.0 0.2 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.1 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)
0.0 0.0 GO:0031219 levanase activity(GO:0031219) fructan beta-fructosidase activity(GO:0051669)
0.0 0.1 GO:0030151 molybdenum ion binding(GO:0030151)
0.0 0.1 GO:0030619 U1 snRNA binding(GO:0030619)
0.0 0.2 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.0 0.1 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 0.2 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634)
0.0 0.1 GO:0080146 L-cysteine desulfhydrase activity(GO:0080146)
0.0 0.3 GO:0008327 methyl-CpG binding(GO:0008327)
0.0 0.2 GO:0019707 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.1 GO:0003880 protein C-terminal carboxyl O-methyltransferase activity(GO:0003880) protein C-terminal S-isoprenylcysteine carboxyl O-methyltransferase activity(GO:0004671)
0.0 0.1 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.0 0.2 GO:0016408 C-acyltransferase activity(GO:0016408)
0.0 0.3 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.1 GO:0004526 ribonuclease P activity(GO:0004526)
0.0 0.1 GO:0010313 phytochrome binding(GO:0010313)
0.0 0.2 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.0 0.1 GO:0004126 cytidine deaminase activity(GO:0004126)
0.0 0.2 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.0 0.1 GO:0050291 sphingosine N-acyltransferase activity(GO:0050291)
0.0 0.1 GO:0070034 telomerase RNA binding(GO:0070034)
0.0 0.0 GO:0047100 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (phosphorylating) activity(GO:0047100)
0.0 0.1 GO:0005452 inorganic anion exchanger activity(GO:0005452)
0.0 0.1 GO:0015929 hexosaminidase activity(GO:0015929)
0.0 0.1 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.0 0.5 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.1 GO:0003909 DNA ligase activity(GO:0003909) DNA ligase (ATP) activity(GO:0003910)
0.0 0.1 GO:0015923 mannosidase activity(GO:0015923)
0.0 0.2 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.0 0.4 GO:0016782 transferase activity, transferring sulfur-containing groups(GO:0016782)
0.0 0.1 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 0.1 GO:0004623 phospholipase A2 activity(GO:0004623)
0.0 0.3 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.1 GO:0003913 DNA photolyase activity(GO:0003913)
0.0 0.0 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.0 0.3 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.1 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.0 0.0 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.0 0.1 GO:0019200 carbohydrate kinase activity(GO:0019200)
0.0 0.0 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.0 0.1 GO:0004739 pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.0 0.1 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.0 0.6 GO:0003755 peptidyl-prolyl cis-trans isomerase activity(GO:0003755)
0.0 0.1 GO:0001653 peptide receptor activity(GO:0001653)
0.0 0.1 GO:0050113 inositol oxygenase activity(GO:0050113)
0.0 0.1 GO:0052634 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.0 0.1 GO:0005546 phosphatidylinositol-4,5-bisphosphate binding(GO:0005546)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 NABA CORE MATRISOME Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans
0.1 0.2 PID DELTA NP63 PATHWAY Validated transcriptional targets of deltaNp63 isoforms
0.0 0.2 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.0 0.2 PID SMAD2 3NUCLEAR PATHWAY Regulation of nuclear SMAD2/3 signaling
0.0 0.2 PID AP1 PATHWAY AP-1 transcription factor network
0.0 0.2 PID IL2 PI3K PATHWAY IL2 signaling events mediated by PI3K
0.0 0.1 SIG CHEMOTAXIS Genes related to chemotaxis
0.0 0.2 PID HIF1 TFPATHWAY HIF-1-alpha transcription factor network
0.0 0.1 PID SHP2 PATHWAY SHP2 signaling
0.0 0.1 PID ATF2 PATHWAY ATF-2 transcription factor network
0.0 0.0 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.5 REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION Genes involved in GABA synthesis, release, reuptake and degradation
0.1 0.4 REACTOME RECYCLING OF BILE ACIDS AND SALTS Genes involved in Recycling of bile acids and salts
0.1 0.3 REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK
0.1 0.1 REACTOME FRS2 MEDIATED CASCADE Genes involved in FRS2-mediated cascade
0.0 0.2 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport
0.0 0.1 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint
0.0 0.1 REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX Genes involved in Signaling by TGF-beta Receptor Complex
0.0 0.2 REACTOME FORMATION OF INCISION COMPLEX IN GG NER Genes involved in Formation of incision complex in GG-NER
0.0 0.1 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.0 0.0 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.0 0.2 REACTOME RNA POL II PRE TRANSCRIPTION EVENTS Genes involved in RNA Polymerase II Pre-transcription Events
0.0 0.1 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.0 0.1 REACTOME TRNA AMINOACYLATION Genes involved in tRNA Aminoacylation
0.0 0.1 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.1 REACTOME TCA CYCLE AND RESPIRATORY ELECTRON TRANSPORT Genes involved in The citric acid (TCA) cycle and respiratory electron transport