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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT4G01500

Z-value: 2.90

Transcription factors associated with AT4G01500

Gene Symbol Gene ID Gene Info
AT4G01500
AT4G01500 AP2/B3-like transcriptional factor family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NGA4arTal_v1_Chr4_+_639247_6392470.661.1e-02Click!

Activity profile of AT4G01500 motif

Sorted Z-values of AT4G01500 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_489467 4.24 AT3G02380.1
COL2
CONSTANS-like 2
Chr4_-_18472048 3.71 AT4G39800.1
MIPS1
myo-inositol-1-phosphate synthase 1
Chr1_+_18546086 3.63 AT1G50050.2
AT1G50050.1
AT1G50050
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr2_+_16216752 3.59 AT2G38800.1
AT2G38800
Plant calmodulin-binding protein-like protein
Chr1_+_6763765 3.50 AT1G19530.1
AT1G19530.2
AT1G19530
DNA polymerase epsilon catalytic subunit A
Chr2_-_16603059 3.06 AT2G39800.2
AT2G39800.4
AT2G39800.3
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr5_-_22991530 3.00 AT5G56860.1
GNC
GATA type zinc finger transcription factor family protein
Chr1_-_29459493 2.99 AT1G78290.2
AT1G78290.3
SNRK2-8
Protein kinase superfamily protein
Chr1_-_450426 2.90 AT1G02280.1
AT1G02280.2
TOC33
translocon at the outer envelope membrane of chloroplasts 33
Chr3_-_20629295 2.84 AT3G55610.1
P5CS2
delta 1-pyrroline-5-carboxylate synthase 2
Chr3_-_20629093 2.73 AT3G55610.2
P5CS2
delta 1-pyrroline-5-carboxylate synthase 2
Chr5_+_7116687 2.61 AT5G20960.2
AO1
aldehyde oxidase 1
Chr5_+_7116455 2.58 AT5G20960.1
AO1
aldehyde oxidase 1
Chr4_+_13725546 2.52 AT4G27440.2
AT4G27440.1
PORB
protochlorophyllide oxidoreductase B
Chr5_+_9261479 2.51 AT5G26570.1
AT5G26570.2
PWD
chloroplastidic phosphoglucan, water dikinase (ATGWD3)
Chr3_+_3034477 2.49 AT3G09900.1
RABE1e
RAB GTPase homolog E1E
Chr2_-_16603319 2.44 AT2G39800.1
P5CS1
delta1-pyrroline-5-carboxylate synthase 1
Chr3_-_17506124 2.42 AT3G47500.1
CDF3
cycling DOF factor 3
Chr4_-_16631339 2.40 AT4G34900.3
AT4G34900.2
AT4G34900.1
XDH2
xanthine dehydrogenase 2
Chr5_-_3595003 2.38 AT5G11260.2
AT5G11260.1
HY5
Basic-leucine zipper (bZIP) transcription factor family protein
Chr4_-_17831619 2.32 AT4G37925.1
NdhM
subunit NDH-M of NAD(P)H:plastoquinone dehydrogenase complex
Chr1_+_24097913 2.30 AT1G64860.2
SIGA
sigma factor A
Chr1_+_24097736 2.29 AT1G64860.1
SIGA
sigma factor A
Chr3_+_1695156 2.26 AT3G05730.1
AT3G05730
defensin-like protein
Chr4_-_18551183 2.23 AT4G40010.1
SNRK2.7
SNF1-related protein kinase 2.7
Chr4_+_14004401 2.22 AT4G28260.1
AT4G28260.2
AT4G28260
acyl-UDP-N-acetylglucosamine O-acyltransferase
Chr5_-_24836933 2.21 AT5G61820.1
AT5G61820.2
AT5G61820
stress up-regulated Nod 19 protein
Chr2_+_1576694 2.20 AT2G04530.1
CPZ
Metallo-hydrolase/oxidoreductase superfamily protein
Chr1_-_29716255 2.19 AT1G78995.1
AT1G78995
hypothetical protein
Chr1_+_28829243 2.18 AT1G76800.1
AT1G76800
Vacuolar iron transporter (VIT) family protein
Chr3_+_22261648 2.18 AT3G60240.3
AT3G60240.4
AT3G60240.2
EIF4G
eukaryotic translation initiation factor 4G
Chr4_-_11850436 2.15 AT4G22490.1
AT4G22490
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_23952133 2.15 AT1G64490.1
AT1G64490
DEK, chromatin associated protein
Chr5_-_18026077 2.13 AT5G44680.1
AT5G44680
DNA glycosylase superfamily protein
Chr2_+_278124 2.08 AT2G01620.1
MEE11
RNI-like superfamily protein
Chr1_-_20893268 2.06 AT1G55860.1
UPL1
LOW protein: E3 ubiquitin ligase-like protein
Chr3_+_4922131 2.04 AT3G14650.1
CYP72A11
cytochrome P450, family 72, subfamily A, polypeptide 11
Chr4_+_7607241 2.03 AT4G13030.1
AT4G13030.2
AT4G13030.3
AT4G13030
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_-_19114173 1.99 AT2G46550.3
AT2G46550.1
AT2G46550.2
AT2G46550
transmembrane protein
Chr5_+_17171807 1.95 AT5G42825.1
AT5G42825
hypothetical protein
Chr3_-_4174934 1.90 AT3G13040.2
AT3G13040
myb-like HTH transcriptional regulator family protein
Chr3_-_22169984 1.90 AT3G60030.1
SPL12
squamosa promoter-binding protein-like 12
Chr1_-_3590928 1.89 AT1G10760.1
AT1G10760.3
SEX1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
Chr3_+_4449259 1.89 AT3G13610.1
AT3G13610
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_-_6853912 1.88 AT4G11260.1
SGT1B
phosphatase-like protein
Chr3_+_19148871 1.88 AT3G51630.2
AT3G51630.1
WNK5
with no lysine (K) kinase 5
Chr3_-_448489 1.87 AT3G02260.1
AT3G02260.4
AT3G02260.3
AT3G02260.2
BIG
auxin transport protein (BIG)
Chr5_+_4122400 1.85 AT5G13010.1
EMB3011
RNA helicase family protein
Chr3_+_19581049 1.85 AT3G52840.2
AT3G52840.1
BGAL2
beta-galactosidase 2
Chr1_+_23968750 1.85 AT1G64550.1
ABCF3
general control non-repressible 3
Chr3_-_4175248 1.84 AT3G13040.3
AT3G13040
myb-like HTH transcriptional regulator family protein
Chr4_+_8392825 1.82 AT4G14630.1
GLP9
germin-like protein 9
Chr3_-_4175457 1.80 AT3G13040.1
AT3G13040
myb-like HTH transcriptional regulator family protein
Chr2_+_8779667 1.78 AT2G20340.1
AT2G20340.2
AAS
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr5_-_23117403 1.77 AT5G57110.3
AT5G57110.1
AT5G57110.2
ACA8
autoinhibited Ca2+ -ATPase, isoform 8
Chr4_+_7775020 1.77 AT4G13360.1
AT4G13360
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Chr4_-_7893727 1.76 AT4G13575.1
AT4G13575.2
AT4G13575
hypothetical protein
Chr2_+_11058944 1.76 AT2G25930.1
ELF3
hydroxyproline-rich glycoprotein family protein
Chr5_+_8301105 1.75 AT5G24350.1
AT5G24350.3
AT5G24350.2
AT5G24350
neuroblastoma-amplified sequence protein
Chr3_+_17420397 1.75 AT3G47290.1
AT3G47290.2
PLC8
phosphatidylinositol-speciwc phospholipase C8
Chr2_-_10017373 1.75 AT2G23520.1
AT2G23520
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr4_-_14325361 1.73 AT4G29080.1
PAP2
phytochrome-associated protein 2
Chr3_-_16169304 1.72 AT3G44600.1
CYP71
cyclophilin71
Chr5_+_21401312 1.72 AT5G52820.1
AT5G52820
WD-40 repeat family protein / notchless protein
Chr5_+_17000259 1.72 AT5G42520.1
AT5G42520.2
AT5G42520.3
BPC6
basic pentacysteine 6
Chr5_+_4768263 1.71 AT5G14760.1
AO
L-aspartate oxidase
Chr1_-_28009450 1.69 AT1G74520.2
AT1G74520.1
HVA22A
HVA22 homologue A
Chr5_+_3633649 1.68 AT5G11390.1
WIT1
WPP domain-interacting protein 1
Chr5_+_17148808 1.68 AT5G42760.2
AT5G42760.1
AT5G42760
Leucine carboxyl methyltransferase
Chr1_+_6942625 1.68 AT1G20020.1
AT1G20020.2
AT1G20020.3
FNR2
ferredoxin-NADP[+]-oxidoreductase 2
Chr1_-_28279798 1.68 AT1G75370.2
AT1G75370
Sec14p-like phosphatidylinositol transfer family protein
Chr1_-_27232996 1.68 AT1G72320.3
AT1G72320.2
AT1G72320.1
AT1G72320.4
PUM23
pumilio 23
Chr2_+_14173579 1.67 AT2G33450.1
PRPL28
Ribosomal L28 family
Chr2_-_1846912 1.67 AT2G05120.2
AT2G05120.1
AT2G05120
Nucleoporin, Nup133/Nup155-like protein
Chr5_-_1624270 1.66 AT5G05480.1
AT5G05480
Peptide-N4-(N-acetyl-beta-glucosaminyl)asparagine amidase A protein
Chr1_-_7573846 1.66 AT1G21600.2
AT1G21600.1
PTAC6
plastid transcriptionally active 6
Chr1_-_9879433 1.66 AT1G28260.2
AT1G28260.1
AT1G28260
Telomerase activating protein Est1
Chr1_+_28059108 1.65 AT1G74680.1
AT1G74680
Exostosin family protein
Chr5_+_26448938 1.65 AT5G66180.1
AT5G66180.2
AT5G66180.3
AT5G66180
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_15815274 1.64 AT5G39500.2
GNL1
GNOM-like 1
Chr1_-_28280033 1.64 AT1G75370.1
AT1G75370
Sec14p-like phosphatidylinositol transfer family protein
Chr1_-_12104660 1.63 AT1G33390.2
AT1G33390.1
FAS4
RNA helicase family protein
Chr3_+_4303822 1.63 AT3G13300.3
AT3G13300.1
AT3G13300.2
VCS
Transducin/WD40 repeat-like superfamily protein
Chr3_+_1603359 1.63 AT3G05530.1
RPT5A
regulatory particle triple-A ATPase 5A
Chr4_+_6136244 1.62 AT4G09730.1
RH39
RH39
Chr5_+_17224270 1.61 AT5G42950.1
AT5G42950
GYF domain-containing protein
Chr3_-_20837160 1.61 AT3G56150.2
AT3G56150.1
EIF3C
eukaryotic translation initiation factor 3C
Chr4_-_18232011 1.60 AT4G39140.5
AT4G39140.1
AT4G39140.2
AT4G39140.4
AT4G39140.3
AT4G39140
RING/U-box superfamily protein
Chr1_-_3590701 1.60 AT1G10760.2
SEX1
Pyruvate phosphate dikinase, PEP/pyruvate binding domain-containing protein
Chr1_+_17945369 1.59 AT1G48540.1
AT1G48540.3
AT1G48540.2
AT1G48540
Outer arm dynein light chain 1 protein
Chr3_-_1108069 1.59 AT3G04210.1
AT3G04210
Disease resistance protein (TIR-NBS class)
Chr4_+_5238773 1.59 AT4G08290.1
AT4G08290.2
UMAMIT20
nodulin MtN21 /EamA-like transporter family protein
Chr4_+_15233042 1.58 AT4G31390.3
AT4G31390.1
AT4G31390.2
ACDO1
Protein kinase superfamily protein
Chr4_+_1412785 1.58 AT4G03205.2
AT4G03205.1
hemf2
Coproporphyrinogen III oxidase
Chr1_-_19225690 1.58 AT1G51805.2
AT1G51805.1
AT1G51805
Leucine-rich repeat protein kinase family protein
Chr2_+_7074353 1.58 AT2G16365.2
AT2G16365.5
AT2G16365.1
AT2G16365.3
AT2G16365
F-box family protein
Chr3_-_1108252 1.58 AT3G04210.2
AT3G04210
Disease resistance protein (TIR-NBS class)
Chr2_-_19281772 1.57 AT2G46920.4
AT2G46920.3
AT2G46920.2
AT2G46920.1
POL
Protein phosphatase 2C family protein
Chr5_+_18856454 1.57 AT5G46500.4
AT5G46500.3
AT5G46500.1
AT5G46500
protein VARIATION IN COMPOUND TRIGGERED ROOT growth protein
Chr5_-_1139631 1.56 AT5G04150.2
AT5G04150.1
BHLH101
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_16781411 1.56 AT4G35270.4
AT4G35270.3
AT4G35270
Plant regulator RWP-RK family protein
Chr5_+_23593059 1.56 AT5G58370.2
AT5G58370.3
AT5G58370.1
AT5G58370
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_18049571 1.55 AT3G48730.1
GSA2
glutamate-1-semialdehyde 2,1-aminomutase 2
Chr1_+_24614817 1.55 AT1G66130.1
AT1G66130
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_5828505 1.55 AT4G09150.1
AT4G09150.2
AT4G09150
T-complex protein 11
Chr4_+_6245916 1.54 AT4G09970.1
AT4G09970.2
AT4G09970
transmembrane protein
Chr2_-_7637832 1.54 AT2G17550.1
AT2G17550.2
TRM26
RB1-inducible coiled-coil protein
Chr2_-_2983602 1.53 AT2G07180.2
AT2G07180.1
AT2G07180
Protein kinase superfamily protein
Chr2_+_13529766 1.53 AT2G31820.1
AT2G31820
Ankyrin repeat family protein
Chr2_+_18919316 1.53 AT2G45990.3
AT2G45990.1
AT2G45990.2
AT2G45990.4
AT2G45990
ribosomal RNA small subunit methyltransferase G
Chr3_-_2052147 1.53 AT3G06580.1
GALK
Mevalonate/galactokinase family protein
Chr5_+_23324643 1.52 AT5G57610.1
AT5G57610
kinase superfamily with octicosapeptide/Phox/Bem1p domain-containing protein
Chr1_-_28064771 1.52 AT1G74690.1
IQD31
IQ-domain 31
Chr5_+_5535845 1.51 AT5G16840.1
AT5G16840.2
AT5G16840.3
BPA1
binding partner of acd11 1
Chr2_+_16510425 1.50 AT2G39580.1
AT2G39580
zinc finger C3H1 domain protein
Chr5_+_15814559 1.50 AT5G39500.1
GNL1
GNOM-like 1
Chr5_-_4842067 1.50 AT5G14950.1
GMII
golgi alpha-mannosidase II
Chr5_-_26169172 1.50 AT5G65460.6
AT5G65460.3
AT5G65460.2
AT5G65460.4
KAC2
kinesin like protein for actin based chloroplast movement 2
Chr3_+_6639639 1.49 AT3G19190.2
AT3G19190.3
AT3G19190.1
ATG2
autophagy 2
Chr1_+_29575806 1.48 AT1G78630.1
emb1473
Ribosomal protein L13 family protein
Chr2_+_18922533 1.48 AT2G46020.1
AT2G46020.3
AT2G46020.5
AT2G46020.4
BRM
transcription regulatory protein SNF2
Chr3_-_21387399 1.47 AT3G57710.1
AT3G57710
Protein kinase superfamily protein
Chr5_-_5913099 1.47 AT5G17880.1
CSA1
disease resistance protein (TIR-NBS-LRR class)
Chr2_-_7802604 1.46 AT2G17930.1
AT2G17930
Phosphatidylinositol 3- and 4-kinase family protein with FAT domain-containing protein
Chr4_-_16782054 1.46 AT4G35270.1
AT4G35270.2
AT4G35270
Plant regulator RWP-RK family protein
Chr5_+_18396254 1.45 AT5G45390.1
CLPP4
CLP protease P4
Chr1_+_27245082 1.44 AT1G72390.1
AT1G72390.2
AT1G72390
nuclear receptor coactivator
Chr5_+_13666524 1.44 AT5G35450.1
AT5G35450.2
AT5G35450
Disease resistance protein (CC-NBS-LRR class) family
Chr2_+_16510273 1.44 AT2G39580.2
AT2G39580
zinc finger C3H1 domain protein
Chr5_+_1944754 1.44 AT5G06360.1
AT5G06360
Ribosomal protein S8e family protein
Chr5_+_15619691 1.43 AT5G39024.1
AT5G39030.1
AT5G39030.2
AT5G39024
AT5G39030
hypothetical protein
Protein kinase superfamily protein
Chr3_-_3179726 1.43 AT3G10270.1
AT3G10270.2
GYRB1
DNA gyrase subunit B
Chr2_+_11625157 1.42 AT2G27200.1
AT2G27200
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_351969 1.42 AT4G00830.1
AT4G00830.2
AT4G00830.3
AT4G00830.4
AT4G00830.5
LIF2
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_-_6855513 1.42 AT3G19720.3
AT3G19720.2
AT3G19720.1
ARC5
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_7571175 1.41 AT5G22760.1
AT5G22760.2
AT5G22760.3
AT5G22760
PHD finger family protein
Chr4_+_16839526 1.41 AT4G35450.1
AT4G35450.5
AT4G35450.3
AT4G35450.2
AKR2
ankyrin repeat-containing protein 2
Chr5_+_24073195 1.41 AT5G59750.3
AT5G59750.1
AT5G59750.2
RIBA3
monofunctional riboflavin biosynthesis protein RIBA 3
Chr1_-_2316507 1.41 AT1G07530.1
SCL14
SCARECROW-like 14
Chr1_-_4020765 1.41 AT1G11910.2
APA1
aspartic proteinase A1
Chr5_-_5913317 1.41 AT5G17880.2
CSA1
disease resistance protein (TIR-NBS-LRR class)
Chr2_+_17850292 1.40 AT2G42890.2
ML2
MEI2-like 2
Chr4_+_7201522 1.40 AT4G12020.4
AT4G12020.5
AT4G12020.7
AT4G12020.8
AT4G12020.6
AT4G12020.9
AT4G12020.10
AT4G12020.11
AT4G12020.1
AT4G12020.3
AT4G12020.2
WRKY19
protein kinase family protein
Chr2_+_11780896 1.40 AT2G27600.1
SKD1
AAA-type ATPase family protein
Chr5_-_2985509 1.40 AT5G09620.2
AT5G09620
Octicosapeptide/Phox/Bem1p family protein
Chr2_-_7979430 1.40 AT2G18360.1
AT2G18360.2
AT2G18360
alpha/beta-Hydrolases superfamily protein
Chr4_-_17230471 1.40 AT4G36515.1
AT4G36515
trichohyalin-like protein
Chr2_-_12796085 1.39 AT2G29990.1
NDA2
alternative NAD(P)H dehydrogenase 2
Chr1_-_4021043 1.39 AT1G11910.1
APA1
aspartic proteinase A1
Chr5_+_1389979 1.39 AT5G04810.1
AT5G04810.2
AT5G04810
pentatricopeptide (PPR) repeat-containing protein
Chr1_-_17879270 1.38 AT1G48380.1
AT1G48380.2
RHL1
root hair initiation protein root hairless 1 (RHL1)
Chr5_-_16490101 1.38 AT5G41190.1
AT5G41190
RNA-binding NOB1-like protein
Chr5_-_2985760 1.37 AT5G09620.1
AT5G09620
Octicosapeptide/Phox/Bem1p family protein
Chr4_-_12822497 1.37 AT4G24930.1
AT4G24930
thylakoid lumenal 17.9 kDa protein, chloroplast
Chr5_+_9731512 1.36 AT5G27560.1
AT5G27560.2
AT5G27560.4
AT5G27560.3
AT5G27560
DUF1995 domain protein, putative (DUF1995)
Chr1_+_813413 1.35 AT1G03310.1
AT1G03310.2
DBE1
debranching enzyme 1
Chr1_+_6805430 1.35 AT1G19680.1
AT1G19680
RING/U-box superfamily protein
Chr5_-_3918933 1.35 AT5G12120.1
AT5G12120
Ubiquitin-associated/translation elongation factor EF1B protein
Chr2_-_9105187 1.35 AT2G21250.1
AT2G21250.2
AT2G21250
NAD(P)-linked oxidoreductase superfamily protein
Chr3_-_2561848 1.34 AT3G08020.1
AT3G08020
PHD finger family protein
Chr4_-_9697578 1.34 AT4G17330.3
AT4G17330.1
AT4G17330.2
G2484-1
G2484-1 protein
Chr4_-_15409000 1.34 AT4G31860.2
AT4G31860.1
AT4G31860.3
AT4G31860
Protein phosphatase 2C family protein
Chr2_+_16095235 1.34 AT2G38440.1
SCAR2
SCAR homolog 2
Chr3_-_4571260 1.34 AT3G13870.2
AT3G13870.1
RHD3
Root hair defective 3 GTP-binding protein (RHD3)
Chr4_+_6777752 1.34 AT4G11120.1
AT4G11120
translation elongation factor Ts (EF-Ts)
Chr5_-_6027249 1.33 AT5G18230.3
AT5G18230.2
AT5G18230.4
AT5G18230.1
AT5G18230
transcription regulator NOT2/NOT3/NOT5 family protein
Chr3_+_5782081 1.33 AT3G16940.3
AT3G16940
calmodulin-binding transcription activator
Chr1_+_807361 1.33 AT1G03290.2
AT1G03290.3
AT1G03290.4
AT1G03290.5
AT1G03290.6
AT1G03290.1
AT1G03290
ELKS/Rab6-interacting/CAST family protein
Chr4_+_9148059 1.33 AT4G16150.1
AT4G16150
calmodulin-binding transcription activator 5
Chr3_-_5804210 1.31 AT3G17020.2
AT3G17020.1
AT3G17020
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr3_-_17673812 1.31 AT3G47890.2
AT3G47890.1
AT3G47890
Ubiquitin carboxyl-terminal hydrolase-related protein
Chr1_+_25756600 1.31 AT1G68585.1
AT1G68585
hypothetical protein
Chr1_-_25331379 1.30 AT1G67580.2
AT1G67580.1
AT1G67580
Protein kinase superfamily protein
Chr4_+_16839928 1.30 AT4G35450.4
AKR2
ankyrin repeat-containing protein 2
Chr1_+_9763211 1.30 AT1G28010.1
ABCB14
P-glycoprotein 14
Chr5_+_4263482 1.30 AT5G13310.1
AT5G13310.2
AT5G13310
hypothetical protein
Chr4_-_16758358 1.30 AT4G35230.1
BSK1
BR-signaling kinase 1
Chr5_+_21780947 1.30 AT5G53620.3
AT5G53620.2
AT5G53620.1
AT5G53620
RNA polymerase II degradation factor
Chr3_+_6687042 1.30 AT3G19290.3
AT3G19290.1
AT3G19290.4
AT3G19290.2
AT3G19290.5
ABF4
ABRE binding factor 4
Chr5_-_23030639 1.30 AT5G56930.1
EMB1789
CCCH-type zinc finger family protein
Chr2_+_17849978 1.29 AT2G42890.3
ML2
MEI2-like 2
Chr5_+_4367262 1.29 AT5G13570.1
AT5G13570.2
DCP2
decapping 2
Chr4_-_15841643 1.29 AT4G32820.2
AT4G32820.3
AT4G32820.1
AT4G32820
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_5976167 1.28 AT3G17450.2
AT3G17450.1
AT3G17450
hAT dimerization domain-containing protein
Chr2_+_9151940 1.28 AT2G21390.1
AT2G21390
Coatomer, alpha subunit
Chr1_-_30234985 1.28 AT1G80410.2
AT1G80410.1
EMB2753
tetratricopeptide repeat (TPR)-containing protein
Chr3_-_8822822 1.27 AT3G24315.1
AtSec20
Sec20 family protein
Chr3_-_21963180 1.27 AT3G59420.1
CR4
crinkly4
Chr2_-_15425129 1.27 AT2G36800.1
DOGT1
don-glucosyltransferase 1
Chr4_-_12792722 1.27 AT4G24820.2
AT4G24820.1
AT4G24820
26S proteasome regulatory subunit Rpn7
Chr5_+_9605484 1.26 AT5G27270.2
AT5G27270.3
AT5G27270.1
AT5G27270.4
AT5G27270.5
EMB976
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_-_1715731 1.26 AT5G05700.1
AT5G05700.2
ATE1
arginine-tRNA protein transferase 1
Chr5_+_19932114 1.26 AT5G49160.1
AT5G49160.2
MET1
methyltransferase 1
Chr4_-_18236044 1.26 AT4G39150.2
AT4G39150.3
AT4G39150.1
AT4G39150
DNAJ heat shock N-terminal domain-containing protein
Chr2_+_17849819 1.26 AT2G42890.1
ML2
MEI2-like 2
Chr1_-_738234 1.25 AT1G03080.2
AT1G03080.1
NET1D
kinase interacting (KIP1-like) family protein
Chr5_-_24226914 1.25 AT5G60160.1
AT5G60160
Zn-dependent exopeptidases superfamily protein
Chr4_+_10949573 1.25 AT4G20270.1
BAM3
Leucine-rich receptor-like protein kinase family protein
Chr4_-_17078007 1.24 AT4G36080.3
AT4G36080.2
AT4G36080.1
AT4G36080
phosphotransferases/inositol or phosphatidylinositol kinase
Chr1_+_25374072 1.24 AT1G67700.1
AT1G67700.2
AT1G67700.5
AT1G67700.4
AT1G67700.3
AT1G67700
multidrug resistance protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT4G01500

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.8 11.1 GO:0055129 L-proline biosynthetic process(GO:0055129)
1.5 4.6 GO:0071461 cellular response to redox state(GO:0071461)
1.2 3.7 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.8 0.8 GO:2000785 regulation of autophagosome assembly(GO:2000785)
0.8 4.6 GO:1902326 positive regulation of chlorophyll biosynthetic process(GO:1902326)
0.7 5.2 GO:0090059 protoxylem development(GO:0090059)
0.7 2.1 GO:1902464 histone H3-K27 trimethylation(GO:0098532) regulation of histone H3-K27 trimethylation(GO:1902464)
0.6 2.6 GO:0060964 regulation of gene silencing by miRNA(GO:0060964)
0.6 3.8 GO:0032011 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012)
0.6 1.9 GO:2000072 regulation of defense response to fungus, incompatible interaction(GO:2000072)
0.6 1.9 GO:0033120 positive regulation of RNA splicing(GO:0033120)
0.5 2.2 GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic(GO:0034414)
0.5 1.6 GO:0007032 endosome organization(GO:0007032)
0.5 1.1 GO:1902066 regulation of cell wall pectin metabolic process(GO:1902066)
0.5 2.7 GO:0000056 ribosomal small subunit export from nucleus(GO:0000056)
0.5 2.6 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.5 1.5 GO:0035493 SNARE complex assembly(GO:0035493)
0.5 1.5 GO:0034727 lysosomal microautophagy(GO:0016237) piecemeal microautophagy of nucleus(GO:0034727) single-organism membrane invagination(GO:1902534)
0.5 4.8 GO:0010031 circumnutation(GO:0010031) multicellular organismal movement(GO:0050879)
0.4 4.0 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.4 3.5 GO:0009061 anaerobic respiration(GO:0009061)
0.4 0.4 GO:0006527 arginine catabolic process(GO:0006527)
0.4 1.3 GO:1901403 positive regulation of cofactor metabolic process(GO:0051194) positive regulation of tetrapyrrole metabolic process(GO:1901403)
0.4 1.3 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.4 1.2 GO:0002188 translation reinitiation(GO:0002188)
0.4 5.0 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.4 2.3 GO:0010258 NADH dehydrogenase complex (plastoquinone) assembly(GO:0010258)
0.4 1.9 GO:0045793 positive regulation of cell size(GO:0045793)
0.4 1.9 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.4 1.1 GO:0090549 response to carbon starvation(GO:0090549)
0.4 1.1 GO:0046898 response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217)
0.4 2.5 GO:2000601 regulation of Arp2/3 complex-mediated actin nucleation(GO:0034315) regulation of actin nucleation(GO:0051125) positive regulation of actin nucleation(GO:0051127) positive regulation of Arp2/3 complex-mediated actin nucleation(GO:2000601)
0.4 2.9 GO:0061727 lactate metabolic process(GO:0006089) methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) ketone catabolic process(GO:0042182) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727)
0.4 1.1 GO:0071481 cellular response to X-ray(GO:0071481)
0.4 2.1 GO:0006013 mannose metabolic process(GO:0006013)
0.3 1.0 GO:0048255 mRNA stabilization(GO:0048255)
0.3 1.0 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.3 1.7 GO:0048464 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.3 1.4 GO:0042256 mature ribosome assembly(GO:0042256)
0.3 1.0 GO:0019365 pyridine nucleotide salvage(GO:0019365)
0.3 1.0 GO:0071763 nuclear membrane organization(GO:0071763)
0.3 2.9 GO:0031086 nuclear-transcribed mRNA catabolic process, deadenylation-independent decay(GO:0031086) deadenylation-independent decapping of nuclear-transcribed mRNA(GO:0031087)
0.3 1.3 GO:0035964 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.3 3.5 GO:0009610 response to symbiotic fungus(GO:0009610)
0.3 1.3 GO:0016598 protein arginylation(GO:0016598)
0.3 3.8 GO:2000144 regulation of transcription initiation from RNA polymerase II promoter(GO:0060260) positive regulation of transcription initiation from RNA polymerase II promoter(GO:0060261) positive regulation of DNA-templated transcription, initiation(GO:2000144)
0.3 2.1 GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay(GO:0000184)
0.3 0.9 GO:0071569 protein ufmylation(GO:0071569)
0.3 1.5 GO:0034051 negative regulation of plant-type hypersensitive response(GO:0034051)
0.3 0.9 GO:0030031 cell projection organization(GO:0030030) cell projection assembly(GO:0030031)
0.3 0.9 GO:0060967 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.3 1.2 GO:0015669 gas transport(GO:0015669)
0.3 1.7 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.3 1.7 GO:0009650 UV protection(GO:0009650)
0.3 2.2 GO:0016926 protein desumoylation(GO:0016926)
0.3 1.3 GO:0070125 mitochondrial translational elongation(GO:0070125)
0.3 1.3 GO:0060151 peroxisome localization(GO:0060151)
0.3 1.0 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.2 0.7 GO:1904215 regulation of protein import into chloroplast stroma(GO:1904215)
0.2 1.7 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.2 1.2 GO:0000098 sulfur amino acid catabolic process(GO:0000098)
0.2 0.9 GO:1900036 positive regulation of cellular response to heat(GO:1900036)
0.2 0.9 GO:0019627 urea metabolic process(GO:0019627)
0.2 1.4 GO:0006021 inositol biosynthetic process(GO:0006021)
0.2 1.8 GO:0009786 regulation of asymmetric cell division(GO:0009786)
0.2 1.6 GO:0016120 carotene biosynthetic process(GO:0016120)
0.2 0.9 GO:0019388 galactose catabolic process(GO:0019388) galactose catabolic process via UDP-galactose(GO:0033499)
0.2 1.1 GO:0009446 putrescine metabolic process(GO:0009445) putrescine biosynthetic process(GO:0009446) putrescine biosynthetic process from arginine(GO:0033388)
0.2 1.5 GO:0046835 carbohydrate phosphorylation(GO:0046835)
0.2 0.4 GO:0061014 positive regulation of mRNA catabolic process(GO:0061014) positive regulation of mRNA metabolic process(GO:1903313)
0.2 2.1 GO:0007008 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.2 1.1 GO:0006106 fumarate metabolic process(GO:0006106)
0.2 0.6 GO:0006883 cellular sodium ion homeostasis(GO:0006883)
0.2 2.5 GO:0017157 regulation of exocytosis(GO:0017157)
0.2 1.2 GO:0006145 purine nucleobase catabolic process(GO:0006145)
0.2 0.6 GO:0019343 L-methionine biosynthetic process from L-homoserine via cystathionine(GO:0019279) cysteine biosynthetic process via cystathionine(GO:0019343) 'de novo' L-methionine biosynthetic process(GO:0071266)
0.2 1.0 GO:1902418 (+)-abscisic acid D-glucopyranosyl ester transmembrane transport(GO:1902418)
0.2 0.9 GO:0080121 AMP transport(GO:0080121)
0.2 0.6 GO:0090547 response to low humidity(GO:0090547)
0.2 0.7 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.2 0.7 GO:1903321 negative regulation of protein modification by small protein conjugation or removal(GO:1903321)
0.2 0.7 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.2 3.1 GO:0006782 protoporphyrinogen IX biosynthetic process(GO:0006782) protoporphyrinogen IX metabolic process(GO:0046501)
0.2 1.1 GO:0009643 photosynthetic acclimation(GO:0009643)
0.2 0.5 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.2 0.9 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.2 0.7 GO:0044380 protein localization to cytoskeleton(GO:0044380) anisotropic cell growth(GO:0051211) protein localization to microtubule cytoskeleton(GO:0072698)
0.2 2.4 GO:0001676 long-chain fatty acid metabolic process(GO:0001676)
0.2 1.9 GO:0006559 L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222)
0.2 0.7 GO:0006428 isoleucyl-tRNA aminoacylation(GO:0006428)
0.2 0.7 GO:0060149 negative regulation of posttranscriptional gene silencing(GO:0060149)
0.2 0.8 GO:0060919 auxin influx(GO:0060919)
0.2 0.8 GO:0010599 production of lsiRNA involved in RNA interference(GO:0010599) mRNA cleavage involved in gene silencing by miRNA(GO:0035279) mRNA cleavage involved in gene silencing(GO:0098795)
0.2 2.8 GO:0006144 purine nucleobase metabolic process(GO:0006144)
0.2 2.7 GO:1901259 chloroplast rRNA processing(GO:1901259)
0.2 1.4 GO:0080183 response to photooxidative stress(GO:0080183)
0.2 1.6 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.2 4.7 GO:0006284 base-excision repair(GO:0006284)
0.2 1.6 GO:0006662 glycerol ether metabolic process(GO:0006662)
0.2 0.9 GO:0070550 establishment of mitotic sister chromatid cohesion(GO:0034087) establishment of protein localization to chromosome(GO:0070199) rDNA condensation(GO:0070550) establishment of protein localization to chromatin(GO:0071169) transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.2 0.5 GO:0043982 histone H4-K8 acetylation(GO:0043982)
0.1 6.8 GO:0045036 protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596)
0.1 0.6 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 1.0 GO:0015909 long-chain fatty acid transport(GO:0015909)
0.1 0.4 GO:0000188 inactivation of MAPK activity(GO:0000188)
0.1 0.7 GO:0009804 coumarin metabolic process(GO:0009804)
0.1 1.0 GO:1902969 mitotic DNA replication(GO:1902969)
0.1 0.6 GO:0046901 tetrahydrofolylpolyglutamate biosynthetic process(GO:0046901)
0.1 0.4 GO:0090392 regulation of multicellular organism growth(GO:0040014) sepal giant cell differentiation(GO:0090392) regulation of adaxial/abaxial pattern formation(GO:2000011)
0.1 0.6 GO:0007076 mitotic chromosome condensation(GO:0007076)
0.1 0.5 GO:0006741 NADP biosynthetic process(GO:0006741)
0.1 2.0 GO:0048766 root hair initiation(GO:0048766)
0.1 0.4 GO:0036265 RNA (guanine-N7)-methylation(GO:0036265) rRNA (guanine-N7)-methylation(GO:0070476)
0.1 1.6 GO:0009051 pentose-phosphate shunt, oxidative branch(GO:0009051)
0.1 0.5 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.1 1.2 GO:0018107 peptidyl-threonine phosphorylation(GO:0018107) peptidyl-threonine modification(GO:0018210)
0.1 1.7 GO:0042793 transcription from plastid promoter(GO:0042793)
0.1 0.9 GO:0009584 detection of visible light(GO:0009584)
0.1 0.5 GO:0031538 negative regulation of anthocyanin metabolic process(GO:0031538)
0.1 1.6 GO:0006265 DNA topological change(GO:0006265)
0.1 0.6 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.1 1.3 GO:0016973 poly(A)+ mRNA export from nucleus(GO:0016973)
0.1 0.4 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.1 4.5 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.1 0.6 GO:0006552 leucine catabolic process(GO:0006552)
0.1 0.3 GO:0043268 positive regulation of potassium ion transport(GO:0043268)
0.1 1.4 GO:0010021 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.1 1.8 GO:0006574 valine catabolic process(GO:0006574)
0.1 0.7 GO:0090057 root radial pattern formation(GO:0090057)
0.1 0.8 GO:0010067 procambium histogenesis(GO:0010067)
0.1 0.4 GO:0046514 glycosylceramide metabolic process(GO:0006677) glucosylceramide metabolic process(GO:0006678) glucosylceramide catabolic process(GO:0006680) glycosphingolipid metabolic process(GO:0006687) glycolipid catabolic process(GO:0019377) glycosylceramide catabolic process(GO:0046477) glycosphingolipid catabolic process(GO:0046479) ceramide catabolic process(GO:0046514)
0.1 1.4 GO:0009231 riboflavin metabolic process(GO:0006771) riboflavin biosynthetic process(GO:0009231)
0.1 1.4 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.1 1.1 GO:0006188 IMP biosynthetic process(GO:0006188)
0.1 0.4 GO:0045763 negative regulation of ethylene biosynthetic process(GO:0010366) negative regulation of sulfur amino acid metabolic process(GO:0031336) negative regulation of cellular amine metabolic process(GO:0033239) negative regulation of cellular amino acid metabolic process(GO:0045763) negative regulation of sulfur metabolic process(GO:0051175) negative regulation of olefin metabolic process(GO:1900909) negative regulation of olefin biosynthetic process(GO:1900912)
0.1 0.6 GO:0006336 DNA replication-independent nucleosome assembly(GO:0006336)
0.1 0.6 GO:0010267 production of ta-siRNAs involved in RNA interference(GO:0010267)
0.1 0.5 GO:0070536 protein K63-linked deubiquitination(GO:0070536)
0.1 0.6 GO:0010225 deoxyribonucleoside metabolic process(GO:0009120) response to UV-C(GO:0010225) thymidine metabolic process(GO:0046104) pyrimidine deoxyribonucleoside metabolic process(GO:0046125)
0.1 0.7 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.1 1.3 GO:0006102 isocitrate metabolic process(GO:0006102)
0.1 1.8 GO:0006890 retrograde vesicle-mediated transport, Golgi to ER(GO:0006890)
0.1 2.5 GO:0007030 Golgi organization(GO:0007030)
0.1 0.6 GO:0019079 viral genome replication(GO:0019079)
0.1 0.3 GO:0006409 tRNA export from nucleus(GO:0006409) tRNA transport(GO:0051031) tRNA-containing ribonucleoprotein complex export from nucleus(GO:0071431)
0.1 1.0 GO:0016559 peroxisome fission(GO:0016559)
0.1 0.6 GO:1900425 negative regulation of defense response to bacterium(GO:1900425)
0.1 0.3 GO:0000730 DNA recombinase assembly(GO:0000730)
0.1 0.7 GO:0042138 meiotic DNA double-strand break formation(GO:0042138)
0.1 0.5 GO:0033683 nucleotide-excision repair, DNA incision(GO:0033683)
0.1 0.4 GO:0006370 7-methylguanosine mRNA capping(GO:0006370)
0.1 1.7 GO:0005983 starch catabolic process(GO:0005983)
0.1 0.2 GO:0042040 molybdenum incorporation into molybdenum-molybdopterin complex(GO:0018315) metal incorporation into metallo-molybdopterin complex(GO:0042040)
0.1 0.7 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.1 0.6 GO:0000919 cell plate assembly(GO:0000919)
0.1 0.3 GO:0071277 cellular response to calcium ion(GO:0071277)
0.1 0.7 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.1 0.9 GO:0007020 microtubule nucleation(GO:0007020)
0.1 1.4 GO:0009773 photosynthetic electron transport in photosystem I(GO:0009773)
0.1 0.6 GO:0050777 negative regulation of immune response(GO:0050777)
0.1 0.6 GO:0097428 protein maturation by iron-sulfur cluster transfer(GO:0097428)
0.1 0.6 GO:0006656 phosphatidylcholine biosynthetic process(GO:0006656)
0.1 0.2 GO:0042780 tRNA 3'-trailer cleavage(GO:0042779) tRNA 3'-end processing(GO:0042780)
0.1 0.3 GO:0035435 phosphate ion transmembrane transport(GO:0035435)
0.1 1.5 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.1 0.2 GO:0048478 replication fork protection(GO:0048478)
0.1 0.3 GO:0046168 glycerol-3-phosphate catabolic process(GO:0046168)
0.1 1.9 GO:2000031 regulation of salicylic acid mediated signaling pathway(GO:2000031)
0.1 0.2 GO:1901529 positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) positive regulation of ion transmembrane transport(GO:0034767) cellular response to absence of light(GO:0071485) positive regulation of anion channel activity(GO:1901529) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.1 1.1 GO:0031167 rRNA methylation(GO:0031167)
0.1 0.9 GO:0007052 mitotic spindle organization(GO:0007052)
0.1 0.6 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.1 0.8 GO:0006620 posttranslational protein targeting to membrane(GO:0006620)
0.1 1.9 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.1 0.7 GO:0070734 histone H3-K27 methylation(GO:0070734)
0.1 1.0 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.1 0.2 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.1 0.9 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.1 0.7 GO:0006904 vesicle docking involved in exocytosis(GO:0006904)
0.1 1.7 GO:0006730 one-carbon metabolic process(GO:0006730)
0.1 0.9 GO:0046112 pyrimidine nucleobase biosynthetic process(GO:0019856) nucleobase biosynthetic process(GO:0046112)
0.1 3.5 GO:0010114 response to red light(GO:0010114)
0.1 1.8 GO:0048278 vesicle docking(GO:0048278)
0.1 1.0 GO:0002238 response to molecule of fungal origin(GO:0002238)
0.1 1.2 GO:0006754 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.1 2.2 GO:0015995 chlorophyll biosynthetic process(GO:0015995)
0.1 1.0 GO:0000460 maturation of 5.8S rRNA(GO:0000460)
0.1 2.4 GO:0051085 'de novo' posttranslational protein folding(GO:0051084) chaperone mediated protein folding requiring cofactor(GO:0051085)
0.1 0.4 GO:0033617 respiratory chain complex IV assembly(GO:0008535) mitochondrial respiratory chain complex IV assembly(GO:0033617) mitochondrial respiratory chain complex IV biogenesis(GO:0097034)
0.1 0.9 GO:0051553 flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555)
0.1 1.0 GO:0048826 cotyledon morphogenesis(GO:0048826)
0.1 0.3 GO:0007142 male meiosis II(GO:0007142)
0.0 0.2 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.0 1.2 GO:0009693 ethylene metabolic process(GO:0009692) ethylene biosynthetic process(GO:0009693) cellular alkene metabolic process(GO:0043449) alkene biosynthetic process(GO:0043450) olefin metabolic process(GO:1900673) olefin biosynthetic process(GO:1900674)
0.0 1.2 GO:0000245 spliceosomal complex assembly(GO:0000245)
0.0 0.8 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.5 GO:0018202 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.7 GO:0070298 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.7 GO:0009645 response to low light intensity stimulus(GO:0009645)
0.0 1.0 GO:0031163 iron-sulfur cluster assembly(GO:0016226) metallo-sulfur cluster assembly(GO:0031163)
0.0 0.4 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.1 GO:0015867 ADP transport(GO:0015866) ATP transport(GO:0015867)
0.0 0.3 GO:0019632 shikimate metabolic process(GO:0019632)
0.0 0.8 GO:0010821 regulation of mitochondrion organization(GO:0010821)
0.0 1.0 GO:0035196 production of miRNAs involved in gene silencing by miRNA(GO:0035196)
0.0 1.0 GO:0090333 regulation of stomatal closure(GO:0090333)
0.0 1.2 GO:0055072 iron ion homeostasis(GO:0055072)
0.0 1.5 GO:0035304 regulation of protein dephosphorylation(GO:0035304)
0.0 1.5 GO:0042023 DNA endoreduplication(GO:0042023)
0.0 0.4 GO:0006826 iron ion transport(GO:0006826)
0.0 0.7 GO:0000373 Group II intron splicing(GO:0000373)
0.0 0.3 GO:0016575 histone deacetylation(GO:0016575)
0.0 1.2 GO:0006887 exocytosis(GO:0006887)
0.0 1.2 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 1.3 GO:0006888 ER to Golgi vesicle-mediated transport(GO:0006888)
0.0 0.3 GO:0045010 positive regulation of actin filament polymerization(GO:0030838) actin nucleation(GO:0045010)
0.0 0.2 GO:0032456 endocytic recycling(GO:0032456)
0.0 2.6 GO:0031146 SCF-dependent proteasomal ubiquitin-dependent protein catabolic process(GO:0031146)
0.0 0.3 GO:0051781 positive regulation of cell division(GO:0051781)
0.0 0.3 GO:0015996 chlorophyll catabolic process(GO:0015996)
0.0 0.7 GO:0001522 pseudouridine synthesis(GO:0001522)
0.0 0.2 GO:0051016 barbed-end actin filament capping(GO:0051016)
0.0 1.4 GO:0000381 regulation of alternative mRNA splicing, via spliceosome(GO:0000381)
0.0 0.4 GO:0006896 Golgi to vacuole transport(GO:0006896)
0.0 1.3 GO:0010051 xylem and phloem pattern formation(GO:0010051)
0.0 1.7 GO:0009817 defense response to fungus, incompatible interaction(GO:0009817)
0.0 1.7 GO:0042538 hyperosmotic salinity response(GO:0042538)
0.0 0.1 GO:0035280 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
0.0 2.0 GO:0045454 cell redox homeostasis(GO:0045454)
0.0 0.8 GO:0010017 red or far-red light signaling pathway(GO:0010017) cellular response to red or far red light(GO:0071489)
0.0 2.1 GO:0016579 protein deubiquitination(GO:0016579)
0.0 4.4 GO:0009658 chloroplast organization(GO:0009658)
0.0 0.5 GO:0006465 signal peptide processing(GO:0006465)
0.0 0.7 GO:0051225 spindle assembly(GO:0051225)
0.0 1.1 GO:0006099 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.0 1.2 GO:0016128 phytosteroid metabolic process(GO:0016128) brassinosteroid metabolic process(GO:0016131)
0.0 0.2 GO:0007188 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.0 0.1 GO:0034389 lipid particle organization(GO:0034389)
0.0 0.7 GO:0006334 nucleosome assembly(GO:0006334)
0.0 0.1 GO:0071242 cellular response to ammonium ion(GO:0071242)
0.0 0.3 GO:0009684 indoleacetic acid biosynthetic process(GO:0009684)
0.0 1.6 GO:0009624 response to nematode(GO:0009624)
0.0 3.0 GO:0006470 protein dephosphorylation(GO:0006470)
0.0 2.5 GO:0048511 circadian rhythm(GO:0007623) rhythmic process(GO:0048511)
0.0 5.6 GO:0045892 negative regulation of transcription, DNA-templated(GO:0045892)
0.0 0.4 GO:0006268 DNA unwinding involved in DNA replication(GO:0006268)
0.0 1.5 GO:0006417 regulation of translation(GO:0006417)
0.0 0.1 GO:1900364 negative regulation of mRNA 3'-end processing(GO:0031441) negative regulation of mRNA processing(GO:0050686) regulation of mRNA polyadenylation(GO:1900363) negative regulation of mRNA polyadenylation(GO:1900364) negative regulation of mRNA metabolic process(GO:1903312)
0.0 0.4 GO:1900055 regulation of leaf senescence(GO:1900055)
0.0 0.1 GO:2001022 positive regulation of DNA repair(GO:0045739) positive regulation of response to DNA damage stimulus(GO:2001022)
0.0 0.3 GO:1990066 nonphotochemical quenching(GO:0010196) energy quenching(GO:1990066)
0.0 1.2 GO:0006418 tRNA aminoacylation for protein translation(GO:0006418)
0.0 0.2 GO:0036065 fucosylation(GO:0036065)
0.0 0.2 GO:0032886 regulation of microtubule-based process(GO:0032886)
0.0 0.1 GO:0010104 regulation of ethylene-activated signaling pathway(GO:0010104) regulation of phosphorelay signal transduction system(GO:0070297)
0.0 0.3 GO:0009292 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.7 GO:0010075 regulation of meristem growth(GO:0010075)
0.0 0.3 GO:1901371 regulation of leaf morphogenesis(GO:1901371)
0.0 1.8 GO:0006364 rRNA processing(GO:0006364)
0.0 0.9 GO:0045489 pectin biosynthetic process(GO:0045489)
0.0 0.1 GO:0006360 transcription from RNA polymerase I promoter(GO:0006360)
0.0 1.1 GO:0006413 translational initiation(GO:0006413)
0.0 1.1 GO:0048544 recognition of pollen(GO:0048544)
0.0 0.5 GO:0010212 response to ionizing radiation(GO:0010212)
0.0 0.5 GO:0090630 activation of GTPase activity(GO:0090630)
0.0 1.1 GO:0009561 megagametogenesis(GO:0009561)
0.0 1.0 GO:0046939 nucleotide phosphorylation(GO:0046939)
0.0 0.1 GO:0080094 response to trehalose-6-phosphate(GO:0080094)
0.0 0.8 GO:0010224 response to UV-B(GO:0010224)
0.0 0.8 GO:0040029 regulation of gene expression, epigenetic(GO:0040029)
0.0 0.7 GO:0006874 cellular calcium ion homeostasis(GO:0006874)
0.0 0.2 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.4 GO:0007031 peroxisome organization(GO:0007031)
0.0 0.8 GO:0042176 regulation of protein catabolic process(GO:0042176)
0.0 0.2 GO:0080060 integument development(GO:0080060)
0.0 3.3 GO:0046686 response to cadmium ion(GO:0046686)
0.0 0.1 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.0 1.1 GO:0080167 response to karrikin(GO:0080167)
0.0 0.1 GO:0009410 response to xenobiotic stimulus(GO:0009410)
0.0 0.2 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.0 0.1 GO:0006333 chromatin assembly or disassembly(GO:0006333)
0.0 0.0 GO:0008615 pyridoxine biosynthetic process(GO:0008615)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.8 GO:0043614 multi-eIF complex(GO:0043614)
0.5 3.4 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.3 1.1 GO:0009509 chromoplast(GO:0009509)
0.3 0.8 GO:0030093 chloroplast photosystem I(GO:0030093)
0.3 1.6 GO:0009346 citrate lyase complex(GO:0009346)
0.3 2.3 GO:0030688 preribosome, small subunit precursor(GO:0030688)
0.3 1.3 GO:0030663 COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663)
0.3 2.5 GO:0031209 SCAR complex(GO:0031209)
0.2 1.2 GO:0034515 proteasome storage granule(GO:0034515)
0.2 0.6 GO:0097361 CIA complex(GO:0097361)
0.2 1.7 GO:0005697 telomerase holoenzyme complex(GO:0005697)
0.2 0.6 GO:0045334 clathrin-coated endocytic vesicle(GO:0045334)
0.2 0.6 GO:0030874 nucleolar chromatin(GO:0030874)
0.2 1.2 GO:0070652 HAUS complex(GO:0070652)
0.2 0.9 GO:0046695 SLIK (SAGA-like) complex(GO:0046695)
0.2 1.5 GO:0009533 chloroplast stromal thylakoid(GO:0009533)
0.2 1.4 GO:0009840 chloroplastic endopeptidase Clp complex(GO:0009840)
0.2 2.8 GO:0010598 NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598)
0.2 0.7 GO:1990752 microtubule end(GO:1990752)
0.2 2.5 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.2 1.0 GO:0000164 protein phosphatase type 1 complex(GO:0000164)
0.1 1.6 GO:0008540 proteasome regulatory particle, base subcomplex(GO:0008540)
0.1 2.7 GO:0031355 intrinsic component of plastid outer membrane(GO:0031354) integral component of plastid outer membrane(GO:0031355) intrinsic component of chloroplast outer membrane(GO:0031358) integral component of chloroplast outer membrane(GO:0031359)
0.1 5.3 GO:0000932 cytoplasmic mRNA processing body(GO:0000932)
0.1 5.1 GO:0009707 chloroplast outer membrane(GO:0009707)
0.1 1.1 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.1 0.5 GO:0097550 transcriptional preinitiation complex(GO:0097550)
0.1 1.3 GO:0070461 SAGA-type complex(GO:0070461)
0.1 0.2 GO:0031902 late endosome membrane(GO:0031902)
0.1 1.7 GO:0032588 trans-Golgi network membrane(GO:0032588)
0.1 0.7 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.1 1.5 GO:0000407 pre-autophagosomal structure(GO:0000407)
0.1 1.2 GO:1902562 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.1 0.9 GO:0000922 spindle pole(GO:0000922)
0.1 1.1 GO:0031428 box C/D snoRNP complex(GO:0031428)
0.1 0.5 GO:0043078 megasporocyte nucleus(GO:0043076) polar nucleus(GO:0043078)
0.1 0.5 GO:0030141 secretory granule(GO:0030141)
0.1 1.0 GO:0042555 MCM complex(GO:0042555)
0.1 1.2 GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)(GO:0045261)
0.1 1.7 GO:0098807 chloroplast thylakoid membrane protein complex(GO:0098807)
0.1 0.7 GO:0035619 root hair tip(GO:0035619)
0.1 2.6 GO:0005680 anaphase-promoting complex(GO:0005680)
0.1 0.8 GO:0010445 nuclear dicing body(GO:0010445)
0.1 0.6 GO:0000796 condensin complex(GO:0000796)
0.1 3.5 GO:0000137 Golgi cis cisterna(GO:0000137)
0.1 1.1 GO:0005763 mitochondrial small ribosomal subunit(GO:0005763)
0.1 1.1 GO:0019774 proteasome core complex, beta-subunit complex(GO:0019774)
0.1 1.0 GO:0031519 PcG protein complex(GO:0031519)
0.1 0.6 GO:0030014 CCR4-NOT complex(GO:0030014)
0.1 0.5 GO:0035145 exon-exon junction complex(GO:0035145)
0.1 1.7 GO:0009508 plastid chromosome(GO:0009508)
0.1 1.9 GO:0005761 mitochondrial ribosome(GO:0005761) mitochondrial large ribosomal subunit(GO:0005762)
0.1 0.4 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.1 0.9 GO:0005736 DNA-directed RNA polymerase I complex(GO:0005736)
0.1 0.1 GO:0005839 proteasome core complex(GO:0005839) proteasome core complex, alpha-subunit complex(GO:0019773)
0.1 1.1 GO:0045239 tricarboxylic acid cycle enzyme complex(GO:0045239)
0.1 2.8 GO:0005643 nuclear pore(GO:0005643)
0.1 0.5 GO:0033588 Elongator holoenzyme complex(GO:0033588)
0.1 11.5 GO:0099503 secretory vesicle(GO:0099503)
0.1 0.6 GO:0012507 ER to Golgi transport vesicle membrane(GO:0012507)
0.1 0.6 GO:0000346 transcription export complex(GO:0000346) THO complex part of transcription export complex(GO:0000445)
0.1 1.5 GO:0031307 intrinsic component of mitochondrial outer membrane(GO:0031306) integral component of mitochondrial outer membrane(GO:0031307)
0.1 4.0 GO:0016607 nuclear speck(GO:0016607)
0.1 0.5 GO:0030140 trans-Golgi network transport vesicle(GO:0030140)
0.1 1.0 GO:0030687 preribosome, large subunit precursor(GO:0030687)
0.1 0.2 GO:0005658 alpha DNA polymerase:primase complex(GO:0005658)
0.1 1.6 GO:0010287 plastoglobule(GO:0010287)
0.1 1.4 GO:0005771 multivesicular body(GO:0005771)
0.1 0.3 GO:0033063 Rad51B-Rad51C-Rad51D-XRCC2 complex(GO:0033063)
0.1 1.3 GO:0042644 chloroplast nucleoid(GO:0042644)
0.1 1.6 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.1 1.2 GO:0000784 nuclear chromosome, telomeric region(GO:0000784)
0.1 0.9 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.1 0.7 GO:0009522 photosystem I(GO:0009522)
0.1 1.1 GO:0000178 exosome (RNase complex)(GO:0000178)
0.1 3.1 GO:0031201 SNARE complex(GO:0031201)
0.1 2.2 GO:0031978 chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978)
0.1 0.6 GO:0070062 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.1 1.0 GO:0009986 cell surface(GO:0009986)
0.1 1.3 GO:0000145 exocyst(GO:0000145)
0.1 3.7 GO:0019005 SCF ubiquitin ligase complex(GO:0019005)
0.1 2.7 GO:0005797 Golgi medial cisterna(GO:0005797)
0.1 1.0 GO:0031304 intrinsic component of mitochondrial inner membrane(GO:0031304)
0.0 0.8 GO:0042575 DNA polymerase complex(GO:0042575)
0.0 1.0 GO:0005665 DNA-directed RNA polymerase II, core complex(GO:0005665)
0.0 0.3 GO:0034388 Pwp2p-containing subcomplex of 90S preribosome(GO:0034388)
0.0 0.7 GO:0044815 nucleosome(GO:0000786) DNA packaging complex(GO:0044815)
0.0 0.3 GO:0005787 signal peptidase complex(GO:0005787)
0.0 0.4 GO:0000439 core TFIIH complex(GO:0000439)
0.0 0.4 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 1.8 GO:0005635 nuclear envelope(GO:0005635)
0.0 2.1 GO:0005875 microtubule associated complex(GO:0005875)
0.0 0.5 GO:0005779 integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231)
0.0 0.2 GO:0009331 glycerol-3-phosphate dehydrogenase complex(GO:0009331)
0.0 0.2 GO:0031351 intrinsic component of plastid membrane(GO:0031350) integral component of plastid membrane(GO:0031351)
0.0 0.7 GO:0005778 peroxisomal membrane(GO:0005778) microbody membrane(GO:0031903)
0.0 19.8 GO:0009526 plastid envelope(GO:0009526)
0.0 6.2 GO:0005730 nucleolus(GO:0005730)
0.0 1.4 GO:0016592 mediator complex(GO:0016592)
0.0 0.8 GO:0005759 mitochondrial matrix(GO:0005759)
0.0 0.6 GO:0055028 cortical microtubule(GO:0055028)
0.0 0.5 GO:0030427 site of polarized growth(GO:0030427)
0.0 2.6 GO:0044421 extracellular space(GO:0005615) extracellular region part(GO:0044421)
0.0 1.3 GO:0009524 phragmoplast(GO:0009524)
0.0 0.2 GO:0031298 replication fork protection complex(GO:0031298)
0.0 2.5 GO:0043656 host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217)
0.0 0.8 GO:0010008 endosome membrane(GO:0010008)
0.0 0.2 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 61.5 GO:0005829 cytosol(GO:0005829)
0.0 0.1 GO:0070552 BRISC complex(GO:0070552)
0.0 1.3 GO:0005681 spliceosomal complex(GO:0005681)
0.0 2.9 GO:0009570 chloroplast stroma(GO:0009570)
0.0 0.2 GO:0005666 DNA-directed RNA polymerase III complex(GO:0005666)
0.0 0.5 GO:0030964 mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271)
0.0 5.6 GO:0055044 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
2.8 11.1 GO:0004350 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
1.3 5.2 GO:0052593 tryptamine:oxygen oxidoreductase (deaminating) activity(GO:0052593) aminoacetone:oxygen oxidoreductase(deaminating) activity(GO:0052594) aliphatic-amine oxidase activity(GO:0052595) phenethylamine:oxygen oxidoreductase (deaminating) activity(GO:0052596)
1.3 5.1 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
1.1 3.3 GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor(GO:0016726)
0.9 2.7 GO:0030941 chloroplast targeting sequence binding(GO:0030941)
0.8 2.5 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.8 3.1 GO:0003959 NADPH dehydrogenase activity(GO:0003959)
0.7 5.2 GO:0016781 phosphotransferase activity, paired acceptors(GO:0016781)
0.6 4.6 GO:0000996 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)
0.6 1.7 GO:0004462 lactoylglutathione lyase activity(GO:0004462)
0.5 2.2 GO:0042781 3'-tRNA processing endoribonuclease activity(GO:0042781)
0.5 2.2 GO:0070138 ubiquitin-like protein-specific isopeptidase activity(GO:0070138) SUMO-specific isopeptidase activity(GO:0070140)
0.4 1.3 GO:0050502 trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502)
0.4 1.7 GO:0070034 telomerase RNA binding(GO:0070034)
0.4 1.2 GO:0004450 isocitrate dehydrogenase (NADP+) activity(GO:0004450)
0.4 1.2 GO:0005344 oxygen transporter activity(GO:0005344)
0.4 1.5 GO:0004335 galactokinase activity(GO:0004335)
0.4 3.8 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.4 1.5 GO:0015924 mannosyl-oligosaccharide mannosidase activity(GO:0015924)
0.4 1.9 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.4 2.5 GO:0051018 protein kinase A regulatory subunit binding(GO:0034237) protein kinase A binding(GO:0051018) Arp2/3 complex binding(GO:0071933)
0.4 1.1 GO:0070003 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.4 1.1 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.4 1.4 GO:0008686 GTP cyclohydrolase II activity(GO:0003935) 3,4-dihydroxy-2-butanone-4-phosphate synthase activity(GO:0008686)
0.3 1.7 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.3 1.7 GO:0003857 3-hydroxyacyl-CoA dehydrogenase activity(GO:0003857)
0.3 1.0 GO:0008936 nicotinamidase activity(GO:0008936)
0.3 1.4 GO:0019156 isoamylase activity(GO:0019156)
0.3 2.3 GO:0008022 protein C-terminus binding(GO:0008022)
0.3 1.3 GO:0004057 arginyltransferase activity(GO:0004057)
0.3 1.6 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.3 0.9 GO:0004034 aldose 1-epimerase activity(GO:0004034)
0.3 0.8 GO:0001130 bacterial-type RNA polymerase transcription factor activity, sequence-specific DNA binding(GO:0001130) bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding(GO:0001216)
0.3 1.1 GO:0004831 tyrosine-tRNA ligase activity(GO:0004831)
0.3 1.6 GO:0003878 ATP citrate synthase activity(GO:0003878)
0.3 1.0 GO:0097363 protein O-GlcNAc transferase activity(GO:0097363)
0.3 1.5 GO:0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor(GO:0016670)
0.2 3.6 GO:0005242 inward rectifier potassium channel activity(GO:0005242)
0.2 2.4 GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505)
0.2 1.2 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.2 1.8 GO:0032266 phosphatidylinositol-3-phosphate binding(GO:0032266)
0.2 0.7 GO:0046976 histone methyltransferase activity (H3-K27 specific)(GO:0046976)
0.2 0.5 GO:0043996 histone acetyltransferase activity (H4-K5 specific)(GO:0043995) histone acetyltransferase activity (H4-K8 specific)(GO:0043996) histone acetyltransferase activity (H4-K16 specific)(GO:0046972)
0.2 1.6 GO:0004345 glucose-6-phosphate dehydrogenase activity(GO:0004345)
0.2 0.9 GO:0004075 biotin carboxylase activity(GO:0004075)
0.2 0.9 GO:0048365 Rac GTPase binding(GO:0048365)
0.2 1.5 GO:0008157 protein phosphatase 1 binding(GO:0008157)
0.2 1.1 GO:0004333 fumarate hydratase activity(GO:0004333)
0.2 0.6 GO:0031210 phosphatidylcholine binding(GO:0031210) quaternary ammonium group binding(GO:0050997)
0.2 1.2 GO:0004416 hydroxyacylglutathione hydrolase activity(GO:0004416)
0.2 0.6 GO:0047804 cysteine-S-conjugate beta-lyase activity(GO:0047804)
0.2 0.6 GO:0003995 acyl-CoA dehydrogenase activity(GO:0003995)
0.2 1.0 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.2 2.1 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.2 0.8 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.2 1.3 GO:0005049 nuclear export signal receptor activity(GO:0005049)
0.2 0.9 GO:0080122 AMP transmembrane transporter activity(GO:0080122)
0.2 0.6 GO:0019136 deoxynucleoside kinase activity(GO:0019136)
0.2 0.7 GO:0001227 transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001227)
0.2 0.7 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.2 0.7 GO:0051011 microtubule minus-end binding(GO:0051011)
0.2 1.8 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.2 0.7 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.2 0.9 GO:0008251 adenosine deaminase activity(GO:0004000) tRNA-specific adenosine deaminase activity(GO:0008251)
0.2 1.2 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.2 1.2 GO:0004567 beta-mannosidase activity(GO:0004567)
0.2 0.7 GO:0004822 isoleucine-tRNA ligase activity(GO:0004822)
0.2 0.7 GO:0004534 5'-3' exoribonuclease activity(GO:0004534)
0.2 0.7 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.2 0.7 GO:0031409 pigment binding(GO:0031409)
0.2 1.8 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.2 0.6 GO:0015923 mannosidase activity(GO:0015923)
0.2 0.5 GO:1990518 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.1 0.4 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.1 0.4 GO:0004651 mRNA guanylyltransferase activity(GO:0004484) polynucleotide 5'-phosphatase activity(GO:0004651) RNA guanylyltransferase activity(GO:0008192)
0.1 1.2 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.1 1.0 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.4 GO:0016435 rRNA (guanine) methyltransferase activity(GO:0016435)
0.1 0.6 GO:0016464 chloroplast protein-transporting ATPase activity(GO:0016464)
0.1 0.4 GO:0004477 methenyltetrahydrofolate cyclohydrolase activity(GO:0004477) methylenetetrahydrofolate dehydrogenase (NADP+) activity(GO:0004488)
0.1 0.9 GO:0043015 gamma-tubulin binding(GO:0043015)
0.1 0.8 GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides(GO:0016819) adenylylsulfatase activity(GO:0047627)
0.1 1.3 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.1 1.1 GO:0030976 thiamine pyrophosphate binding(GO:0030976)
0.1 1.5 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.1 1.3 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.1 0.4 GO:0052692 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 1.1 GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor(GO:0016635)
0.1 1.1 GO:0003955 NAD(P)H dehydrogenase (quinone) activity(GO:0003955)
0.1 0.6 GO:0042800 histone methyltransferase activity (H3-K4 specific)(GO:0042800)
0.1 0.6 GO:0004326 tetrahydrofolylpolyglutamate synthase activity(GO:0004326)
0.1 1.3 GO:0003746 translation elongation factor activity(GO:0003746)
0.1 1.1 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.1 1.6 GO:0017056 structural constituent of nuclear pore(GO:0017056)
0.1 0.4 GO:0004348 glucosylceramidase activity(GO:0004348)
0.1 2.9 GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity(GO:0015450)
0.1 0.4 GO:0017017 MAP kinase tyrosine/serine/threonine phosphatase activity(GO:0017017)
0.1 0.7 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 0.8 GO:0010328 auxin influx transmembrane transporter activity(GO:0010328)
0.1 2.5 GO:0016655 oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor(GO:0016655)
0.1 1.2 GO:0004032 alditol:NADP+ 1-oxidoreductase activity(GO:0004032)
0.1 2.6 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.1 0.6 GO:0003913 DNA photolyase activity(GO:0003913)
0.1 1.0 GO:0003906 DNA-(apurinic or apyrimidinic site) lyase activity(GO:0003906)
0.1 0.7 GO:0016151 nickel cation binding(GO:0016151)
0.1 4.0 GO:0043022 ribosome binding(GO:0043022)
0.1 1.8 GO:0016641 oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor(GO:0016641)
0.1 1.0 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.1 0.4 GO:0005432 calcium:sodium antiporter activity(GO:0005432)
0.1 3.0 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.1 0.9 GO:0004435 phosphatidylinositol phospholipase C activity(GO:0004435)
0.1 1.0 GO:0051537 2 iron, 2 sulfur cluster binding(GO:0051537)
0.1 0.3 GO:0015929 hexosaminidase activity(GO:0015929)
0.1 1.4 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.1 0.3 GO:0008821 crossover junction endodeoxyribonuclease activity(GO:0008821)
0.1 0.9 GO:0016634 oxidoreductase activity, acting on the CH-CH group of donors, oxygen as acceptor(GO:0016634)
0.1 0.2 GO:0016643 glutamate synthase (ferredoxin) activity(GO:0016041) oxidoreductase activity, acting on the CH-NH2 group of donors, iron-sulfur protein as acceptor(GO:0016643)
0.1 5.0 GO:0003678 DNA helicase activity(GO:0003678)
0.1 3.6 GO:0003713 transcription coactivator activity(GO:0003713)
0.1 0.2 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.1 0.9 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 2.9 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.1 0.7 GO:0098847 single-stranded telomeric DNA binding(GO:0043047) sequence-specific single stranded DNA binding(GO:0098847)
0.1 0.3 GO:0015245 fatty acid transporter activity(GO:0015245)
0.1 1.5 GO:0009982 pseudouridine synthase activity(GO:0009982)
0.1 1.1 GO:0016742 hydroxymethyl-, formyl- and related transferase activity(GO:0016742)
0.1 1.9 GO:0004565 beta-galactosidase activity(GO:0004565) galactosidase activity(GO:0015925)
0.1 0.8 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.1 5.0 GO:0003724 RNA helicase activity(GO:0003724)
0.1 4.1 GO:0003743 translation initiation factor activity(GO:0003743)
0.1 0.9 GO:0031491 nucleosome binding(GO:0031491)
0.1 0.3 GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity(GO:0004367)
0.1 0.4 GO:0033836 flavonol 7-O-beta-glucosyltransferase activity(GO:0033836)
0.1 4.9 GO:0042393 histone binding(GO:0042393)
0.1 0.7 GO:0008320 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.1 3.6 GO:0005484 SNAP receptor activity(GO:0005484)
0.1 0.3 GO:0004765 shikimate kinase activity(GO:0004765)
0.1 0.3 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.1 2.8 GO:0035091 phosphatidylinositol binding(GO:0035091)
0.1 0.2 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.1 1.5 GO:0043424 protein histidine kinase binding(GO:0043424)
0.1 0.4 GO:0017112 Rab guanyl-nucleotide exchange factor activity(GO:0017112)
0.1 1.4 GO:0000149 SNARE binding(GO:0000149)
0.1 0.2 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.1 0.3 GO:0008296 3'-5'-exodeoxyribonuclease activity(GO:0008296)
0.1 0.2 GO:0001671 ATPase activator activity(GO:0001671)
0.1 1.1 GO:0030515 snoRNA binding(GO:0030515)
0.1 0.2 GO:0004556 alpha-amylase activity(GO:0004556)
0.1 0.8 GO:0003725 double-stranded RNA binding(GO:0003725)
0.1 1.3 GO:0051087 chaperone binding(GO:0051087)
0.1 0.8 GO:0015248 sterol transporter activity(GO:0015248)
0.1 2.2 GO:0016671 oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor(GO:0016671)
0.0 0.1 GO:0031071 cysteine desulfurase activity(GO:0031071)
0.0 0.3 GO:0002161 aminoacyl-tRNA editing activity(GO:0002161)
0.0 0.9 GO:0004673 protein histidine kinase activity(GO:0004673) phosphotransferase activity, nitrogenous group as acceptor(GO:0016775)
0.0 0.2 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.0 4.1 GO:0003682 chromatin binding(GO:0003682)
0.0 0.3 GO:0010011 auxin binding(GO:0010011)
0.0 0.5 GO:0047938 glucose-6-phosphate 1-epimerase activity(GO:0047938)
0.0 0.6 GO:0004017 adenylate kinase activity(GO:0004017)
0.0 1.5 GO:0005262 calcium channel activity(GO:0005262)
0.0 9.2 GO:0005516 calmodulin binding(GO:0005516)
0.0 0.8 GO:0060090 binding, bridging(GO:0060090)
0.0 0.7 GO:0030276 clathrin binding(GO:0030276)
0.0 4.9 GO:0032561 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)
0.0 0.5 GO:0003951 NAD+ kinase activity(GO:0003951)
0.0 0.1 GO:0051377 mannose-ethanolamine phosphotransferase activity(GO:0051377)
0.0 0.2 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.0 6.7 GO:0042803 protein homodimerization activity(GO:0042803)
0.0 2.6 GO:0101005 ubiquitinyl hydrolase activity(GO:0101005)
0.0 9.1 GO:0004175 endopeptidase activity(GO:0004175)
0.0 0.8 GO:0000049 tRNA binding(GO:0000049)
0.0 1.6 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.5 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 1.3 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.3 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.0 14.5 GO:0008270 zinc ion binding(GO:0008270)
0.0 0.8 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.0 1.0 GO:0031072 heat shock protein binding(GO:0031072)
0.0 1.5 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.0 0.3 GO:0102391 decanoate--CoA ligase activity(GO:0102391)
0.0 0.4 GO:0008146 sulfotransferase activity(GO:0008146)
0.0 1.1 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 0.1 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.0 3.4 GO:0043531 ADP binding(GO:0043531)
0.0 0.3 GO:0004312 fatty acid synthase activity(GO:0004312)
0.0 3.1 GO:0042802 identical protein binding(GO:0042802)
0.0 0.2 GO:0004096 catalase activity(GO:0004096)
0.0 0.6 GO:0016790 thiolester hydrolase activity(GO:0016790)
0.0 0.1 GO:0008172 S-methyltransferase activity(GO:0008172) thiol S-methyltransferase activity(GO:0018708)
0.0 0.7 GO:0008080 N-acetyltransferase activity(GO:0008080)
0.0 0.1 GO:0004072 aspartate kinase activity(GO:0004072)
0.0 0.1 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.0 1.6 GO:0051213 dioxygenase activity(GO:0051213)
0.0 0.2 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.0 0.3 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.6 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.7 GO:0003697 single-stranded DNA binding(GO:0003697)
0.0 3.9 GO:0003735 structural constituent of ribosome(GO:0003735)
0.0 1.4 GO:0051015 actin filament binding(GO:0051015)
0.0 1.2 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.0 5.0 GO:0004842 ubiquitin-protein transferase activity(GO:0004842)
0.0 0.7 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.6 GO:0003727 single-stranded RNA binding(GO:0003727)
0.0 0.5 GO:0003779 actin binding(GO:0003779)
0.0 0.5 GO:0005347 ATP transmembrane transporter activity(GO:0005347)
0.0 0.4 GO:0008378 galactosyltransferase activity(GO:0008378)
0.0 9.8 GO:0003723 RNA binding(GO:0003723)
0.0 0.2 GO:0008641 small protein activating enzyme activity(GO:0008641)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.7 PID MTOR 4PATHWAY mTOR signaling pathway
0.2 1.1 PID SHP2 PATHWAY SHP2 signaling
0.2 0.6 PID IL8 CXCR1 PATHWAY IL8- and CXCR1-mediated signaling events
0.2 1.2 PID IL2 PI3K PATHWAY IL2 signaling events mediated by PI3K
0.1 0.4 SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES Genes related to the insulin receptor pathway
0.1 0.3 PID ERA GENOMIC PATHWAY Validated nuclear estrogen receptor alpha network
0.1 0.4 PID CMYB PATHWAY C-MYB transcription factor network
0.0 0.2 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE Genes involved in mRNA Decay by 5' to 3' Exoribonuclease
0.4 1.1 REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR Genes involved in Downstream signaling of activated FGFR
0.3 0.8 REACTOME TRANSPORT OF MATURE TRANSCRIPT TO CYTOPLASM Genes involved in Transport of Mature Transcript to Cytoplasm
0.2 0.6 REACTOME SIGNALING BY CONSTITUTIVELY ACTIVE EGFR Genes involved in Signaling by constitutively active EGFR
0.2 2.7 REACTOME ACTIVATION OF THE MRNA UPON BINDING OF THE CAP BINDING COMPLEX AND EIFS AND SUBSEQUENT BINDING TO 43S Genes involved in Activation of the mRNA upon binding of the cap-binding complex and eIFs, and subsequent binding to 43S
0.1 0.9 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA
0.1 0.8 REACTOME GLUCOSE METABOLISM Genes involved in Glucose metabolism
0.1 0.4 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.1 1.1 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.1 0.6 REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES Genes involved in Metabolism of amino acids and derivatives
0.0 1.0 REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT Genes involved in ABC-family proteins mediated transport
0.0 0.5 REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION Genes involved in Factors involved in megakaryocyte development and platelet production
0.0 0.1 REACTOME PROCESSIVE SYNTHESIS ON THE LAGGING STRAND Genes involved in Processive synthesis on the lagging strand