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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT4G00730
Z-value: 1.85
Transcription factors associated with AT4G00730
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT4G00730
|
AT4G00730 | Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ANL2 | arTal_v1_Chr4_-_304508_304612 | -0.02 | 9.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6130025_6130025 Show fit | 1.89 |
AT1G17810.1
|
beta-tonoplast intrinsic protein |
|
| arTal_v1_Chr2_-_7496292_7496292 Show fit | 1.79 |
AT2G17230.1
|
EXORDIUM like 5 |
|
| arTal_v1_Chr1_+_1244947_1244947 Show fit | 1.68 |
AT1G04560.1
|
AWPM-19-like family protein |
|
| arTal_v1_Chr5_+_3783930_3783930 Show fit | 1.49 |
AT5G11740.1
|
arabinogalactan protein 15 |
|
| arTal_v1_Chr5_+_733887_733887 Show fit | 1.49 |
AT5G03120.1
AT5G03120.2 |
transmembrane protein |
|
| arTal_v1_Chr1_-_59215_59215 Show fit | 1.37 |
AT1G01120.1
|
3-ketoacyl-CoA synthase 1 |
|
| arTal_v1_Chr4_-_2413447_2413447 Show fit | 1.34 |
AT4G04745.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_7410406_7410406 Show fit | 1.31 |
AT4G12490.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_1568694_1568694 Show fit | 1.30 |
AT5G05290.1
|
expansin A2 |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.29 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT4G00730
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 6.6 | GO:0042335 | cuticle development(GO:0042335) |
| 0.1 | 5.2 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.1 | 4.2 | GO:0045489 | pectin biosynthetic process(GO:0045489) |
| 0.1 | 3.4 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.0 | 3.1 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.0 | 2.8 | GO:0048545 | response to steroid hormone(GO:0048545) |
| 0.2 | 2.3 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
| 0.1 | 2.0 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 2.0 | GO:0009690 | cytokinin metabolic process(GO:0009690) |
| 0.3 | 1.8 | GO:0048830 | adventitious root development(GO:0048830) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 55.9 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 12.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.1 | 9.3 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 4.7 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.5 | 2.0 | GO:0070505 | pollen coat(GO:0070505) |
| 0.0 | 1.9 | GO:0042995 | cell projection(GO:0042995) |
| 0.0 | 1.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 1.2 | GO:0071818 | BAT3 complex(GO:0071818) |
| 0.0 | 1.1 | GO:0005811 | lipid particle(GO:0005811) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.7 | GO:0047262 | polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262) |
| 0.1 | 4.5 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.2 | 4.2 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.1 | 3.8 | GO:0005179 | hormone activity(GO:0005179) |
| 0.0 | 3.8 | GO:0015297 | antiporter activity(GO:0015297) |
| 0.1 | 3.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 2.7 | GO:0001228 | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228) |
| 0.3 | 2.6 | GO:0009922 | fatty acid elongase activity(GO:0009922) |
| 0.3 | 2.5 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.1 | 2.5 | GO:0005199 | structural constituent of cell wall(GO:0005199) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.2 | 0.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.3 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.2 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
| 0.0 | 0.0 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.9 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.2 | 0.8 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.1 | 0.6 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.1 | 0.3 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 0.3 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.0 | 0.2 | REACTOME NUCLEAR SIGNALING BY ERBB4 | Genes involved in Nuclear signaling by ERBB4 |
| 0.0 | 0.2 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.1 | REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL | Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell |
| 0.0 | 0.1 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |