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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G60530

Z-value: 2.88

Transcription factors associated with AT3G60530

Gene Symbol Gene ID Gene Info
AT3G60530
AT3G60530 GATA transcription factor 4

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
GATA4arTal_v1_Chr3_+_22373013_223730130.312.7e-01Click!

Activity profile of AT3G60530 motif

Sorted Z-values of AT3G60530 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_14542565 3.47 AT4G29690.1
AT4G29690
Alkaline-phosphatase-like family protein
Chr1_-_24703041 3.44 AT1G66270.2
AT1G66270.1
BGLU21
Glycosyl hydrolase superfamily protein
Chr4_+_8929031 2.55 AT4G15670.1
AT4G15670
Thioredoxin superfamily protein
Chr5_+_15742543 2.45 AT5G39320.1
UDG4
UDP-glucose 6-dehydrogenase family protein
Chr1_-_28453820 2.41 AT1G75780.1
TUB1
tubulin beta-1 chain
Chr3_-_20142763 2.36 AT3G54400.1
AT3G54400
Eukaryotic aspartyl protease family protein
Chr5_-_1861656 2.36 AT5G06150.2
AT5G06150.1
CYC1BAT
Cyclin family protein
Chr1_-_24709996 2.26 AT1G66280.1
BGLU22
Glycosyl hydrolase superfamily protein
Chr3_+_9409160 2.25 AT3G25780.1
AOC3
allene oxide cyclase 3
Chr1_-_1043887 2.18 AT1G04040.1
AT1G04040
HAD superfamily, subfamily IIIB acid phosphatase
Chr2_-_17438168 2.18 AT2G41800.1
AT2G41800
imidazolonepropionase (Protein of unknown function, DUF642)
Chr2_+_11401118 2.17 AT2G26760.1
CYCB1%3B4
Cyclin B1;4
Chr3_-_11269228 2.14 AT3G29360.2
AT3G29360.1
UGD2
UDP-glucose 6-dehydrogenase family protein
Chr1_-_2972334 2.10 AT1G09200.1
AT1G09200
Histone superfamily protein
Chr4_+_11763625 2.09 AT4G22235.1
AT4G22235.2
AT4G22235
defensin-like protein
Chr2_-_15324119 2.08 AT2G36530.2
AT2G36530.1
LOS2
Enolase
Chr1_+_12233632 2.05 AT1G33750.1
AT1G33750
Terpenoid cyclases/Protein prenyltransferases superfamily protein
Chr5_-_24552855 2.03 AT5G61000.1
RPA70D
Replication factor-A protein 1-like protein
Chr3_+_957112 2.00 AT3G03780.1
AT3G03780.3
MS2
methionine synthase 2
Chr4_+_14762819 1.98 AT4G30170.1
AT4G30170
Peroxidase family protein
Chr2_-_15481377 1.98 AT2G36880.2
AT2G36880.1
MAT3
methionine adenosyltransferase 3
Chr3_+_956862 1.94 AT3G03780.2
MS2
methionine synthase 2
Chr3_+_415389 1.94 AT3G02230.1
RGP1
reversibly glycosylated polypeptide 1
Chr4_-_10423487 1.93 AT4G19030.3
AT4G19030.1
AT4G19030.2
NLM1
NOD26-like major intrinsic protein 1
Chr4_-_11902642 1.91 AT4G22610.1
AT4G22610
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_-_4873683 1.90 AT5G15050.1
AT5G15050
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr4_-_16749964 1.86 AT4G35200.1
AT4G35200
hypothetical protein (DUF241)
Chr2_+_1676999 1.84 AT2G04780.2
FLA7
FASCICLIN-like arabinoogalactan 7
Chr3_+_20196329 1.82 AT3G54560.2
HTA11
histone H2A 11
Chr2_+_1676717 1.82 AT2G04780.1
FLA7
FASCICLIN-like arabinoogalactan 7
Chr4_-_8050157 1.82 AT4G13930.1
SHM4
serine hydroxymethyltransferase 4
Chr1_-_7301633 1.81 AT1G20950.1
AT1G20950
Phosphofructokinase family protein
Chr3_-_2334185 1.78 AT3G07320.1
AT3G07320
O-Glycosyl hydrolases family 17 protein
Chr3_-_19629204 1.76 AT3G52930.1
FBA8
Aldolase superfamily protein
Chr4_-_6260259 1.75 AT4G09990.1
GXM2
glucuronoxylan 4-O-methyltransferase-like protein (DUF579)
Chr1_-_22866666 1.75 AT1G61870.1
PPR336
pentatricopeptide repeat 336
Chr3_+_20196140 1.75 AT3G54560.1
HTA11
histone H2A 11
Chr1_+_10252241 1.74 AT1G29310.1
AT1G29310.2
AT1G29310
SecY protein transport family protein
Chr4_+_608454 1.73 AT4G01450.1
AT4G01450.4
AT4G01450.3
UMAMIT30
nodulin MtN21 /EamA-like transporter family protein
Chr2_+_13141290 1.72 AT2G30870.1
GSTF10
glutathione S-transferase PHI 10
Chr5_-_13911225 1.70 AT5G35740.1
AT5G35740
Carbohydrate-binding X8 domain superfamily protein
Chr5_+_9275893 1.68 AT5G26667.2
AT5G26667.1
AT5G26667.4
AT5G26667.3
PYR6
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_17734706 1.67 AT5G44070.1
AT5G44070.2
CAD1
phytochelatin synthase 1 (PCS1)
Chr5_+_8584535 1.67 AT5G24920.1
GDU5
glutamine dumper 5
Chr5_+_22312976 1.67 AT5G54970.1
AT5G54970
hypothetical protein
Chr5_-_26129547 1.67 AT5G65390.1
AGP7
arabinogalactan protein 7
Chr5_-_5030245 1.64 AT5G15490.1
UGD3
UDP-glucose 6-dehydrogenase family protein
Chr3_+_22340859 1.64 AT3G60450.2
AT3G60450.1
AT3G60450
Phosphoglycerate mutase family protein
Chr3_+_9143916 1.63 AT3G25100.1
CDC45
cell division cycle 45
Chr3_-_17288953 1.63 AT3G46940.1
AT3G46940.2
DUT1
DUTP-PYROPHOSPHATASE-LIKE 1
Chr3_-_9313599 1.60 AT3G25610.1
AT3G25610
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Chr2_+_9068252 1.60 AT2G21160.1
AT2G21160.2
AT2G21160
Translocon-associated protein (TRAP), alpha subunit
Chr1_+_18517586 1.58 AT1G50010.1
TUA2
tubulin alpha-2 chain
Chr1_+_19708011 1.57 AT1G52910.1
AT1G52910
fiber (DUF1218)
Chr5_+_15409684 1.57 AT5G38480.1
AT5G38480.2
AT5G38480.3
GRF3
general regulatory factor 3
Chr3_-_3334986 1.56 AT3G10660.2
AT3G10660.1
CPK2
calmodulin-domain protein kinase cdpk isoform 2
Chr5_+_22694823 1.55 AT5G56040.2
AT5G56040.1
AT5G56040
Leucine-rich receptor-like protein kinase family protein
Chr4_-_7545512 1.55 AT4G12880.1
ENODL19
early nodulin-like protein 19
Chr5_-_17185032 1.55 AT5G42860.1
AT5G42860
late embryogenesis abundant protein, group 2
Chr3_+_686981 1.55 AT3G03050.1
CSLD3
cellulose synthase-like D3
Chr5_-_19388562 1.52 AT5G47880.2
AT5G47880.1
ERF1-1
eukaryotic release factor 1-1
Chr3_-_19008724 1.52 AT3G51160.1
MUR1
NAD(P)-binding Rossmann-fold superfamily protein
Chr3_-_2607573 1.52 AT3G08580.1
AAC1
ADP/ATP carrier 1
Chr1_-_1358547 1.52 AT1G04820.1
TUA4
tubulin alpha-4 chain
Chr2_-_10277266 1.52 AT2G24170.1
AT2G24170.2
AT2G24170
Endomembrane protein 70 protein family
Chr3_+_10053929 1.51 AT3G27230.1
AT3G27230
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_+_1080942 1.51 AT3G04120.1
GAPC1
glyceraldehyde-3-phosphate dehydrogenase C subunit 1
Chr1_-_16777352 1.51 AT1G44110.1
CYCA1%3B1
Cyclin A1;1
Chr1_+_3449567 1.50 AT1G10480.1
ZFP5
zinc finger protein 5
Chr2_-_14178800 1.50 AT2G33470.1
AT2G33470.2
GLTP1
glycolipid transfer protein 1
Chr1_+_26814260 1.50 AT1G71100.1
RSW10
Ribose 5-phosphate isomerase, type A protein
Chr3_-_2607895 1.50 AT3G08580.2
AAC1
ADP/ATP carrier 1
Chr4_+_11983974 1.47 AT4G22810.1
AT4G22810
Putative AT-hook DNA-binding family protein
Chr4_+_14017343 1.47 AT4G28310.1
AT4G28310
microtubule-associated protein
Chr1_+_19958380 1.47 AT1G53470.1
MSL4
mechanosensitive channel of small conductance-like 4
Chr4_+_608273 1.47 AT4G01450.2
UMAMIT30
nodulin MtN21 /EamA-like transporter family protein
Chr3_-_8275565 1.47 AT3G23175.1
AT3G23175
HR-like lesion-inducing protein-like protein
Chr5_-_4533119 1.44 AT5G14040.1
PHT3%3B1
phosphate transporter 3;1
Chr3_+_2620713 1.44 AT3G08630.1
AT3G08630
alphavirus core family protein (DUF3411)
Chr5_-_3427897 1.44 AT5G10840.1
EMP1
Endomembrane protein 70 protein family
Chr2_+_14830626 1.43 AT2G35190.1
NPSN11
Putative plant snare 11
Chr5_-_23725585 1.43 AT5G58730.1
Mik
pfkB-like carbohydrate kinase family protein
Chr5_+_18559060 1.43 AT5G45750.1
RABA1c
RAB GTPase homolog A1C
Chr1_+_29549540 1.43 AT1G78570.1
RHM1
rhamnose biosynthesis 1
Chr3_-_4008018 1.40 AT3G12610.1
DRT100
Leucine-rich repeat (LRR) family protein
Chr2_+_13328862 1.38 AT2G31270.1
CDT1A
CDT1-like protein A
Chr1_-_20967162 1.38 AT1G56060.2
AT1G56060.1
AT1G56060
cysteine-rich/transmembrane domain protein B
Chr5_-_5642623 1.38 AT5G17160.1
AT5G17160
aspartic/glutamic acid-rich protein
Chr5_-_19977620 1.37 AT5G49280.1
AT5G49280
hydroxyproline-rich glycoprotein family protein
Chr3_-_6614107 1.37 AT3G19130.1
RBP47B
RNA-binding protein 47B
Chr2_-_14990931 1.36 AT2G35658.2
AT2G35658.3
AT2G35658.1
AT2G35658
transmembrane protein
Chr1_+_19152508 1.35 AT1G51650.1
AT1G51650
ATP synthase epsilon chain
Chr3_+_85551 1.34 AT3G01280.1
VDAC1
voltage dependent anion channel 1
Chr1_-_23706005 1.34 AT1G63860.3
AT1G63860.4
AT1G63860.1
AT1G63860.5
AT1G63860.2
AT1G63860.6
AT1G63860
Disease resistance protein (TIR-NBS-LRR class) family
Chr3_-_5954091 1.32 AT3G17390.1
MTO3
S-adenosylmethionine synthetase family protein
Chr1_+_12010879 1.32 AT1G33120.1
AT1G33120
Ribosomal protein L6 family
Chr5_+_2144525 1.31 AT5G06930.2
AT5G06930.1
AT5G06930
nucleolar-like protein
Chr1_+_4864881 1.30 AT1G14240.2
AT1G14240.4
AT1G14240.1
AT1G14240.3
AT1G14240
GDA1/CD39 nucleoside phosphatase family protein
Chr5_-_23917873 1.30 AT5G59290.3
AT5G59290.2
UXS3
UDP-glucuronic acid decarboxylase 3
Chr5_-_23918266 1.30 AT5G59290.1
AT5G59290.4
UXS3
UDP-glucuronic acid decarboxylase 3
Chr4_-_7545326 1.29 AT4G12880.2
ENODL19
early nodulin-like protein 19
Chr2_-_7643605 1.29 AT2G17560.2
AT2G17560.3
AT2G17560.1
HMGB4
high mobility group B4
Chr2_-_8518194 1.29 AT2G19760.1
PRF1
profilin 1
Chr5_-_17861150 1.29 AT5G44340.1
TUB4
tubulin beta chain 4
Chr3_-_5892216 1.27 AT3G17240.2
AT3G17240.3
AT3G17240.1
mtLPD2
lipoamide dehydrogenase 2
Chr3_-_8138084 1.27 AT3G22950.2
AT3G22950.1
ARFC1
ADP-ribosylation factor C1
Chr2_+_7209108 1.27 AT2G16630.1
AT2G16630
Pollen Ole e 1 allergen and extensin family protein
Chr5_+_25881033 1.27 AT5G64740.1
CESA6
cellulose synthase 6
Chr3_-_22972239 1.27 AT3G62020.2
AT3G62020.1
GLP10
germin-like protein 10
Chr1_-_26279255 1.26 AT1G69810.2
AT1G69810.1
WRKY36
WRKY DNA-binding protein 36
Chr4_+_13830827 1.26 AT4G27720.1
AT4G27720
Major facilitator superfamily protein
Chr5_-_26842104 1.26 AT5G67270.1
EB1C
end binding protein 1C
Chr1_+_8219808 1.26 AT1G23190.1
PGM3
Phosphoglucomutase/phosphomannomutase family protein
Chr3_+_2492260 1.26 AT3G07810.1
AT3G07810.2
AT3G07810
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_+_2455239 1.26 AT3G07680.1
p24beta2
emp24/gp25L/p24 family/GOLD family protein
Chr1_-_26253687 1.25 AT1G69770.1
CMT3
chromomethylase 3
Chr5_+_26083216 1.25 AT5G65270.1
RABA4a
RAB GTPase homolog A4A
Chr2_+_9151940 1.22 AT2G21390.1
AT2G21390
Coatomer, alpha subunit
Chr3_+_4964105 1.22 AT3G14790.2
AT3G14790.1
RHM3
rhamnose biosynthesis 3
Chr1_-_6268828 1.22 AT1G18210.2
AT1G18210.1
AT1G18210
Calcium-binding EF-hand family protein
Chr1_+_7645610 1.22 AT1G21750.1
AT1G21750.2
PDIL1-1
PDI-like 1-1
Chr3_-_1238616 1.22 AT3G04580.1
AT3G04580.2
EIN4
Signal transduction histidine kinase, hybrid-type, ethylene sensor
Chr3_+_20500234 1.21 AT3G55280.1
AT3G55280.3
AT3G55280.2
RPL23AB
ribosomal protein L23AB
Chr3_+_17183042 1.21 AT3G46640.1
AT3G46640.3
AT3G46640.2
PCL1
Homeodomain-like superfamily protein
Chr5_-_1925407 1.20 AT5G06300.1
LOG7
Putative lysine decarboxylase family protein
Chr1_+_27959527 1.20 AT1G74380.1
XXT5
xyloglucan xylosyltransferase 5
Chr4_+_15268446 1.20 AT4G31490.2
AT4G31490.1
AT4G31490
Coatomer, beta subunit
Chr5_-_6684744 1.20 AT5G19770.1
TUA3
tubulin alpha-3
Chr4_-_17204346 1.19 AT4G36420.1
AT4G36420
Ribosomal protein L12 family protein
Chr5_-_7084859 1.19 AT5G20885.1
AT5G20885
RING/U-box superfamily protein
Chr5_+_5392755 1.19 AT5G16510.1
RGP5
Alpha-1,4-glucan-protein synthase family protein
Chr2_-_17441416 1.18 AT2G41810.1
AT2G41810
imidazolonepropionase (Protein of unknown function, DUF642)
Chr3_-_20684063 1.18 AT3G55730.1
MYB109
myb domain protein 109
Chr1_+_2276030 1.18 AT1G07410.1
RABA2b
RAB GTPase homolog A2B
Chr4_-_8550430 1.18 AT4G14960.1
AT4G14960.2
TUA6
Tubulin/FtsZ family protein
Chr4_+_18185437 1.18 AT4G39030.1
EDS5
MATE efflux family protein
Chr3_+_22979848 1.17 AT3G62060.1
AT3G62060.2
AT3G62060
Pectinacetylesterase family protein
Chr1_+_12072611 1.17 AT1G33280.1
NAC015
NAC domain containing protein 15
Chr5_+_5392576 1.17 AT5G16510.2
RGP5
Alpha-1,4-glucan-protein synthase family protein
Chr2_-_13747810 1.17 AT2G32380.1
AT2G32380
Transmembrane protein 97, Putative
Chr5_-_17755742 1.17 AT5G44110.2
AT5G44110.4
AT5G44110.3
AT5G44110.1
ABCI21
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_19513937 1.17 AT3G52630.2
AT3G52630.1
AT3G52630
Nucleic acid-binding, OB-fold-like protein
Chr4_-_7470737 1.16 AT4G12650.1
AT4G12650
Endomembrane protein 70 protein family
Chr1_-_22149526 1.16 AT1G60070.1
AT1G60070.2
AT1G60070
Adaptor protein complex AP-1, gamma subunit
Chr5_-_556623 1.16 AT5G02500.1
HSC70-1
heat shock cognate protein 70-1
Chr5_-_556442 1.15 AT5G02500.2
HSC70-1
heat shock cognate protein 70-1
Chr2_+_18855675 1.15 AT2G45790.1
PMM
phosphomannomutase
Chr4_+_13444797 1.14 AT4G26650.1
AT4G26650.2
AT4G26650
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr3_+_22151164 1.14 AT3G59970.3
AT3G59970.2
AT3G59970.1
MTHFR1
methylenetetrahydrofolate reductase 1
Chr5_+_3219677 1.13 AT5G10260.1
RABH1e
RAB GTPase homolog H1E
Chr2_-_12408239 1.13 AT2G28890.1
PLL4
poltergeist like 4
Chr4_+_15268756 1.13 AT4G31490.3
AT4G31490
Coatomer, beta subunit
Chr1_+_22814216 1.13 AT1G61790.1
AT1G61790
Oligosaccharyltransferase complex/magnesium transporter family protein
Chr1_+_22919487 1.12 AT1G62020.1
AT1G62020
Coatomer, alpha subunit
Chr3_-_19442427 1.12 AT3G52450.1
PUB22
plant U-box 22
Chr5_-_20532856 1.12 AT5G50420.1
AT5G50420
O-fucosyltransferase family protein
Chr3_-_18442198 1.12 AT3G49720.2
AT3G49720.3
AT3G49720.1
AT3G49720
transmembrane protein
Chr2_+_14462023 1.12 AT2G34250.1
AT2G34250.2
AT2G34250
SecY protein transport family protein
Chr2_+_14462286 1.11 AT2G34250.3
AT2G34250
SecY protein transport family protein
Chr1_+_27078524 1.11 AT1G71940.2
AT1G71940.1
AT1G71940
SNARE associated Golgi protein family
Chr2_-_7431939 1.10 AT2G17070.1
AT2G17070
hypothetical protein (DUF241)
Chr1_+_23789062 1.10 AT1G64090.2
AT1G64090.1
RTNLB3
Reticulan like protein B3
Chr3_-_20229214 1.10 AT3G54650.1
FBL17
RNI-like superfamily protein
Chr3_-_20756690 1.10 AT3G55950.1
CCR3
CRINKLY4 related 3
Chr3_+_9154508 1.10 AT3G25140.1
QUA1
Nucleotide-diphospho-sugar transferases superfamily protein
Chr3_-_8100820 1.09 AT3G22880.2
AT3G22880.1
DMC1
DNA repair (Rad51) family protein
Chr4_-_11519805 1.09 AT4G21680.1
NRT1.8
NITRATE TRANSPORTER 1.8
Chr1_+_22814367 1.09 AT1G61790.2
AT1G61790
Oligosaccharyltransferase complex/magnesium transporter family protein
Chr1_+_11084666 1.09 AT1G31070.1
AT1G31070.2
GlcNAc1pUT1
N-acetylglucosamine-1-phosphate uridylyltransferase 1
Chr1_+_29461391 1.08 AT1G78300.1
GRF2
general regulatory factor 2
Chr2_-_17992047 1.08 AT2G43290.1
MSS3
Calcium-binding EF-hand family protein
Chr1_-_19326916 1.07 AT1G51980.2
AT1G51980.1
AT1G51980
Insulinase (Peptidase family M16) protein
Chr2_+_9545283 1.07 AT2G22480.1
PFK5
phosphofructokinase 5
Chr4_-_13692832 1.07 AT4G27350.1
AT4G27350
membrane lipoprotein lipid attachment site-like protein, putative (DUF1223)
Chr2_+_15359906 1.06 AT2G36650.1
AT2G36650
CHUP1-like protein
Chr1_+_10994440 1.06 AT1G30890.2
AT1G30890
Integral membrane HRF1 family protein
Chr1_+_8079287 1.06 AT1G22840.1
AT1G22840.2
CYTC-1
CYTOCHROME C-1
Chr3_+_17450852 1.05 AT3G47360.1
HSD3
hydroxysteroid dehydrogenase 3
Chr4_-_16344818 1.05 AT4G34131.1
UGT73B3
UDP-glucosyl transferase 73B3
Chr5_+_22923804 1.05 AT5G56630.1
PFK7
phosphofructokinase 7
Chr1_+_10994243 1.04 AT1G30890.1
AT1G30890
Integral membrane HRF1 family protein
Chr5_-_924728 1.04 AT5G03630.1
ATMDAR2
Pyridine nucleotide-disulfide oxidoreductase family protein
Chr5_+_18218586 1.03 AT5G45100.2
AT5G45100.1
BRG1
SBP (S-ribonuclease binding protein) family protein
Chr1_+_2437281 1.03 AT1G07890.1
AT1G07890.6
AT1G07890.2
AT1G07890.5
AT1G07890.7
AT1G07890.4
AT1G07890.8
APX1
ascorbate peroxidase 1
Chr2_-_18089371 1.03 AT2G43610.1
AT2G43610
Chitinase family protein
Chr3_+_20578922 1.02 AT3G55510.1
AT3G55510.2
RBL
Noc2p family
Chr3_+_1621355 1.02 AT3G05590.1
AT3G05590.2
AT3G05590.3
RPL18
ribosomal protein L18
Chr5_+_4526766 1.02 AT5G14030.1
AT5G14030.5
AT5G14030.3
AT5G14030.4
AT5G14030.2
AT5G14030
translocon-associated protein beta (TRAPB) family protein
Chr5_-_23488620 1.02 AT5G58030.1
AT5G58030
Transport protein particle (TRAPP) component
Chr1_-_24598513 1.01 AT1G66070.2
AT1G66070.1
AT1G66070
Translation initiation factor eIF3 subunit
Chr2_+_5741592 1.01 AT2G13790.1
SERK4
somatic embryogenesis receptor-like kinase 4
Chr5_+_9480702 1.01 AT5G26940.3
AT5G26940.1
AT5G26940.2
DPD1
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr1_-_11607777 1.01 AT1G32210.2
AT1G32210.1
ATDAD1
Defender against death (DAD family) protein
Chr2_+_15944583 1.01 AT2G38090.1
AT2G38090
Duplicated homeodomain-like superfamily protein
Chr5_+_5935038 1.00 AT5G17920.1
AT5G17920.2
ATMS1
Cobalamin-independent synthase family protein
Chr3_-_1505721 1.00 AT3G05280.1
AT3G05280
Integral membrane Yip1 family protein
Chr3_+_22337791 1.00 AT3G60440.1
AT3G60440.2
AT3G60440
Phosphoglycerate mutase family protein
Chr3_-_9801209 0.99 AT3G26670.3
AT3G26670.4
AT3G26670.2
AT3G26670.1
AT3G26670
magnesium transporter, putative (DUF803)
Chr1_-_18706657 0.99 AT1G50490.1
UBC20
ubiquitin-conjugating enzyme 20
Chr1_+_26329863 0.99 AT1G69910.1
AT1G69910
Protein kinase superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G60530

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.6 6.2 GO:0006023 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
1.3 3.9 GO:0071258 cellular response to gravity(GO:0071258)
1.0 3.0 GO:0071163 DNA replication preinitiation complex assembly(GO:0071163)
0.8 4.2 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.8 3.9 GO:1903175 fatty alcohol biosynthetic process(GO:1903175)
0.8 3.1 GO:0033478 UDP-rhamnose biosynthetic process(GO:0010253) UDP-rhamnose metabolic process(GO:0033478)
0.6 1.9 GO:0010372 positive regulation of gibberellin biosynthetic process(GO:0010372)
0.6 3.6 GO:0015700 arsenite transport(GO:0015700)
0.6 2.4 GO:0009143 nucleoside triphosphate catabolic process(GO:0009143)
0.6 1.7 GO:0046705 CDP metabolic process(GO:0046704) CDP biosynthetic process(GO:0046705)
0.5 2.1 GO:0042144 regulation of vacuole fusion, non-autophagic(GO:0032889) vacuole fusion, non-autophagic(GO:0042144)
0.5 2.0 GO:0072698 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.5 3.2 GO:0015689 molybdate ion transport(GO:0015689)
0.4 1.2 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.4 1.2 GO:0034067 protein localization to Golgi apparatus(GO:0034067)
0.4 3.7 GO:0033320 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.4 1.6 GO:0002164 nematode larval development(GO:0002119) larval development(GO:0002164) regulation of nematode larval development(GO:0061062)
0.4 3.4 GO:0009804 coumarin metabolic process(GO:0009804)
0.4 1.5 GO:0002184 cytoplasmic translational termination(GO:0002184)
0.4 1.5 GO:0042989 sequestering of actin monomers(GO:0042989)
0.4 1.1 GO:0055047 generative cell mitosis(GO:0055047)
0.4 1.1 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.4 1.8 GO:1902767 farnesyl diphosphate biosynthetic process, mevalonate pathway(GO:0010142) isoprenoid biosynthetic process via mevalonate(GO:1902767)
0.4 0.4 GO:0042770 signal transduction in response to DNA damage(GO:0042770)
0.4 1.1 GO:0000730 DNA recombinase assembly(GO:0000730) strand invasion(GO:0042148)
0.3 1.0 GO:0051574 positive regulation of histone H3-K9 methylation(GO:0051574)
0.3 0.7 GO:1902583 multi-organism intracellular transport(GO:1902583)
0.3 1.2 GO:0010482 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.3 1.5 GO:0042351 'de novo' GDP-L-fucose biosynthetic process(GO:0042351)
0.3 0.9 GO:1901031 protein heterooligomerization(GO:0051291) regulation of oxidoreductase activity(GO:0051341) regulation of response to reactive oxygen species(GO:1901031)
0.3 1.5 GO:0035627 ceramide transport(GO:0035627)
0.3 0.9 GO:0033615 mitochondrial proton-transporting ATP synthase complex assembly(GO:0033615)
0.3 2.1 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.3 0.8 GO:0006498 N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377)
0.3 1.3 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.3 6.3 GO:0006890 retrograde vesicle-mediated transport, Golgi to ER(GO:0006890)
0.3 1.8 GO:1904482 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.3 3.6 GO:0044030 regulation of DNA methylation(GO:0044030)
0.3 1.5 GO:0051775 response to redox state(GO:0051775)
0.2 0.7 GO:0010541 acropetal auxin transport(GO:0010541)
0.2 1.7 GO:0015837 amine transport(GO:0015837) regulation of organic acid transport(GO:0032890) regulation of amine transport(GO:0051952) regulation of amino acid transport(GO:0051955) regulation of amino acid export(GO:0080143)
0.2 2.4 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.2 1.4 GO:0009650 UV protection(GO:0009650)
0.2 0.9 GO:0015739 sialic acid transport(GO:0015739)
0.2 4.3 GO:0033356 UDP-L-arabinose metabolic process(GO:0033356)
0.2 1.1 GO:0045730 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 0.9 GO:0048200 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.2 0.9 GO:0016320 endoplasmic reticulum membrane fusion(GO:0016320)
0.2 1.1 GO:0071786 endoplasmic reticulum tubular network organization(GO:0071786)
0.2 1.1 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.2 0.6 GO:0045905 positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905)
0.2 0.6 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.2 0.6 GO:0051211 anisotropic cell growth(GO:0051211)
0.2 3.0 GO:0015865 purine nucleotide transport(GO:0015865)
0.2 1.2 GO:0006013 mannose metabolic process(GO:0006013)
0.2 0.9 GO:0006106 fumarate metabolic process(GO:0006106)
0.2 0.8 GO:0046086 adenosine salvage(GO:0006169) adenosine biosynthetic process(GO:0046086)
0.2 1.7 GO:0010264 myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517)
0.2 1.1 GO:0035999 tetrahydrofolate interconversion(GO:0035999)
0.2 2.4 GO:0010332 response to gamma radiation(GO:0010332)
0.2 2.0 GO:0006278 RNA-dependent DNA biosynthetic process(GO:0006278) telomere maintenance via telomerase(GO:0007004)
0.2 1.4 GO:0009920 cell plate formation involved in plant-type cell wall biogenesis(GO:0009920)
0.1 0.7 GO:0048358 mucilage pectin biosynthetic process(GO:0048358)
0.1 1.3 GO:0034312 sphingosine metabolic process(GO:0006670) diol metabolic process(GO:0034311) diol biosynthetic process(GO:0034312) sphingosine biosynthetic process(GO:0046512)
0.1 0.6 GO:0042344 indole glucosinolate catabolic process(GO:0042344)
0.1 0.7 GO:0019720 Mo-molybdopterin cofactor biosynthetic process(GO:0006777) Mo-molybdopterin cofactor metabolic process(GO:0019720) molybdopterin cofactor biosynthetic process(GO:0032324) molybdopterin cofactor metabolic process(GO:0043545) prosthetic group metabolic process(GO:0051189)
0.1 0.6 GO:0080141 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.1 0.7 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.1 2.1 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.1 1.4 GO:0006308 DNA catabolic process(GO:0006308)
0.1 0.5 GO:0043693 monoterpene biosynthetic process(GO:0043693)
0.1 3.7 GO:0006094 gluconeogenesis(GO:0006094)
0.1 0.4 GO:0070922 miRNA loading onto RISC involved in gene silencing by miRNA(GO:0035280) small RNA loading onto RISC(GO:0070922)
0.1 3.9 GO:0009833 plant-type primary cell wall biogenesis(GO:0009833)
0.1 0.5 GO:0070509 calcium ion import(GO:0070509)
0.1 0.7 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)
0.1 0.3 GO:0090058 microtubule depolymerization(GO:0007019) metaxylem development(GO:0090058)
0.1 1.5 GO:0048766 root hair initiation(GO:0048766)
0.1 1.4 GO:0034063 stress granule assembly(GO:0034063)
0.1 3.4 GO:0042026 protein refolding(GO:0042026)
0.1 2.1 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.1 1.0 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.1 0.3 GO:0015786 UDP-glucose transport(GO:0015786)
0.1 1.8 GO:0009750 response to fructose(GO:0009750)
0.1 0.5 GO:0006047 UDP-N-acetylglucosamine metabolic process(GO:0006047) UDP-N-acetylglucosamine biosynthetic process(GO:0006048) amino sugar biosynthetic process(GO:0046349)
0.1 0.5 GO:0072599 protein targeting to ER(GO:0045047) establishment of protein localization to endoplasmic reticulum(GO:0072599)
0.1 0.2 GO:0033240 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.1 0.7 GO:0010508 positive regulation of autophagy(GO:0010508)
0.1 0.3 GO:0006620 posttranslational protein targeting to membrane(GO:0006620)
0.1 0.6 GO:0007035 vacuolar acidification(GO:0007035) intracellular pH reduction(GO:0051452)
0.1 1.0 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.1 5.1 GO:0006888 ER to Golgi vesicle-mediated transport(GO:0006888)
0.1 1.2 GO:0000266 mitochondrial fission(GO:0000266)
0.1 1.4 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.1 0.3 GO:0010042 response to manganese ion(GO:0010042)
0.1 1.3 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.1 0.6 GO:0034308 primary alcohol metabolic process(GO:0034308)
0.1 0.8 GO:1904668 positive regulation of ubiquitin protein ligase activity(GO:1904668)
0.1 1.2 GO:0007008 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.1 1.2 GO:0071324 cellular response to disaccharide stimulus(GO:0071324) cellular response to sucrose stimulus(GO:0071329)
0.1 6.6 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.1 2.5 GO:0070417 cellular response to cold(GO:0070417)
0.1 0.7 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.1 1.2 GO:0009697 salicylic acid biosynthetic process(GO:0009697)
0.1 0.7 GO:0009226 nucleotide-sugar biosynthetic process(GO:0009226)
0.1 0.7 GO:0070370 cellular heat acclimation(GO:0070370)
0.1 0.3 GO:0036065 fucosylation(GO:0036065)
0.1 0.8 GO:0051046 regulation of exocytosis(GO:0017157) regulation of secretion(GO:0051046) regulation of secretion by cell(GO:1903530)
0.1 1.9 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.1 5.1 GO:0045454 cell redox homeostasis(GO:0045454)
0.1 0.4 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.1 1.0 GO:0031145 anaphase-promoting complex-dependent catabolic process(GO:0031145)
0.1 1.0 GO:0006538 glutamate catabolic process(GO:0006538)
0.1 0.3 GO:0019745 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.1 0.5 GO:0031222 arabinan catabolic process(GO:0031222)
0.1 1.3 GO:0015985 ATP biosynthetic process(GO:0006754) energy coupled proton transport, down electrochemical gradient(GO:0015985) ATP synthesis coupled proton transport(GO:0015986)
0.1 1.0 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.1 3.3 GO:1902600 hydrogen ion transmembrane transport(GO:1902600)
0.1 0.6 GO:0010088 phloem development(GO:0010088)
0.1 1.9 GO:0000027 ribosomal large subunit assembly(GO:0000027)
0.1 2.0 GO:0060548 negative regulation of cell death(GO:0060548)
0.1 0.5 GO:0006891 intra-Golgi vesicle-mediated transport(GO:0006891)
0.1 0.4 GO:0010310 regulation of hydrogen peroxide metabolic process(GO:0010310)
0.1 4.4 GO:0072657 protein localization to membrane(GO:0072657)
0.1 0.3 GO:0010452 histone H3-K36 methylation(GO:0010452)
0.1 1.0 GO:0071218 cellular response to misfolded protein(GO:0071218)
0.1 0.2 GO:0032011 ARF protein signal transduction(GO:0032011) regulation of ARF protein signal transduction(GO:0032012)
0.1 0.6 GO:0052325 cell wall pectin biosynthetic process(GO:0052325)
0.0 0.1 GO:0060151 peroxisome localization(GO:0060151)
0.0 0.5 GO:0015780 nucleotide-sugar transport(GO:0015780)
0.0 0.7 GO:0009870 defense response signaling pathway, resistance gene-dependent(GO:0009870)
0.0 0.1 GO:0009915 phloem sucrose loading(GO:0009915)
0.0 0.6 GO:0018126 protein hydroxylation(GO:0018126) peptidyl-proline hydroxylation to 4-hydroxy-L-proline(GO:0018401) 4-hydroxyproline metabolic process(GO:0019471) peptidyl-proline hydroxylation(GO:0019511)
0.0 0.4 GO:0051365 cellular response to potassium ion starvation(GO:0051365)
0.0 0.7 GO:0098876 vesicle-mediated transport to the plasma membrane(GO:0098876)
0.0 0.4 GO:0018344 protein geranylgeranylation(GO:0018344)
0.0 0.1 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.0 0.7 GO:0007052 mitotic spindle organization(GO:0007052)
0.0 2.0 GO:0034599 cellular response to oxidative stress(GO:0034599)
0.0 0.3 GO:1904961 quiescent center organization(GO:1904961)
0.0 0.2 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
0.0 0.6 GO:0015770 sucrose transport(GO:0015770)
0.0 1.0 GO:0007264 small GTPase mediated signal transduction(GO:0007264)
0.0 0.3 GO:0006491 N-glycan processing(GO:0006491)
0.0 1.6 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.9 GO:0048768 root hair cell tip growth(GO:0048768)
0.0 0.5 GO:0045910 negative regulation of DNA recombination(GO:0045910)
0.0 1.7 GO:0090487 toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487)
0.0 0.4 GO:0002221 pattern recognition receptor signaling pathway(GO:0002221)
0.0 0.9 GO:0008356 asymmetric cell division(GO:0008356)
0.0 0.1 GO:1902914 regulation of protein polyubiquitination(GO:1902914) positive regulation of protein polyubiquitination(GO:1902916)
0.0 0.0 GO:0010395 rhamnogalacturonan I metabolic process(GO:0010395)
0.0 0.1 GO:0018345 protein palmitoylation(GO:0018345)
0.0 0.1 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.0 0.2 GO:0006751 glutathione catabolic process(GO:0006751)
0.0 0.6 GO:0000054 ribosomal subunit export from nucleus(GO:0000054) ribosome localization(GO:0033750) establishment of ribosome localization(GO:0033753) rRNA-containing ribonucleoprotein complex export from nucleus(GO:0071428)
0.0 0.5 GO:0048497 maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497)
0.0 0.9 GO:0070588 calcium ion transmembrane transport(GO:0070588)
0.0 0.5 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.0 0.1 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.0 1.0 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 3.5 GO:0000226 microtubule cytoskeleton organization(GO:0000226)
0.0 1.0 GO:0010582 floral meristem determinacy(GO:0010582)
0.0 0.9 GO:0006099 tricarboxylic acid cycle(GO:0006099) citrate metabolic process(GO:0006101)
0.0 1.3 GO:0006333 chromatin assembly or disassembly(GO:0006333)
0.0 1.0 GO:0043067 regulation of programmed cell death(GO:0043067)
0.0 0.7 GO:0047484 regulation of response to osmotic stress(GO:0047484)
0.0 0.1 GO:0010351 lithium ion transport(GO:0010351)
0.0 0.6 GO:0009294 genetic transfer(GO:0009292) DNA mediated transformation(GO:0009294)
0.0 0.3 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.5 GO:0010152 pollen maturation(GO:0010152)
0.0 0.1 GO:0046051 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
0.0 0.8 GO:0005992 trehalose biosynthetic process(GO:0005992)
0.0 0.1 GO:0006435 threonyl-tRNA aminoacylation(GO:0006435)
0.0 0.2 GO:0080183 response to photooxidative stress(GO:0080183)
0.0 0.1 GO:2001294 fatty-acyl-CoA catabolic process(GO:0036115) malonyl-CoA catabolic process(GO:2001294)
0.0 0.4 GO:0042761 very long-chain fatty acid biosynthetic process(GO:0042761)
0.0 0.8 GO:0009132 nucleoside diphosphate metabolic process(GO:0009132)
0.0 1.8 GO:0042546 cell wall biogenesis(GO:0042546)
0.0 0.2 GO:0043462 regulation of ATPase activity(GO:0043462)
0.0 1.8 GO:0043413 protein glycosylation(GO:0006486) macromolecule glycosylation(GO:0043413)
0.0 0.4 GO:0045037 protein import into chloroplast stroma(GO:0045037)
0.0 1.5 GO:0018209 peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209)
0.0 0.2 GO:0010199 organ boundary specification between lateral organs and the meristem(GO:0010199)
0.0 1.1 GO:0007017 microtubule-based process(GO:0007017)
0.0 1.7 GO:0006633 fatty acid biosynthetic process(GO:0006633)
0.0 0.6 GO:0006414 translational elongation(GO:0006414)
0.0 0.1 GO:0051014 actin filament severing(GO:0051014)
0.0 0.5 GO:0009846 pollen germination(GO:0009846)
0.0 0.9 GO:0019722 calcium-mediated signaling(GO:0019722)
0.0 0.1 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.0 0.7 GO:0009624 response to nematode(GO:0009624)
0.0 0.1 GO:0046209 nitric oxide metabolic process(GO:0046209)
0.0 0.1 GO:0006730 one-carbon metabolic process(GO:0006730)
0.0 0.2 GO:0008285 negative regulation of cell proliferation(GO:0008285)
0.0 0.4 GO:0019762 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.7 2.1 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.7 3.3 GO:0030126 COPI vesicle coat(GO:0030126) COPI-coated vesicle membrane(GO:0030663)
0.5 1.6 GO:0036387 nuclear pre-replicative complex(GO:0005656) pre-replicative complex(GO:0036387)
0.5 6.8 GO:0045298 tubulin complex(GO:0045298)
0.5 2.0 GO:0010330 cellulose synthase complex(GO:0010330)
0.5 1.8 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.4 1.3 GO:1990752 microtubule plus-end(GO:0035371) microtubule end(GO:1990752)
0.4 1.5 GO:0018444 translation release factor complex(GO:0018444)
0.3 1.0 GO:0030689 Noc complex(GO:0030689)
0.3 0.9 GO:0031080 nuclear pore outer ring(GO:0031080)
0.3 2.4 GO:0005784 Sec61 translocon complex(GO:0005784)
0.3 1.1 GO:0034663 endoplasmic reticulum chaperone complex(GO:0034663)
0.2 2.2 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.2 2.0 GO:0005662 DNA replication factor A complex(GO:0005662)
0.2 1.1 GO:0001673 male germ cell nucleus(GO:0001673)
0.2 3.1 GO:0005793 endoplasmic reticulum-Golgi intermediate compartment(GO:0005793)
0.2 1.8 GO:0016471 vacuolar proton-transporting V-type ATPase complex(GO:0016471)
0.2 1.3 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.2 0.5 GO:0034702 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.2 0.6 GO:0032045 guanyl-nucleotide exchange factor complex(GO:0032045)
0.2 0.6 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130)
0.1 1.3 GO:0000275 mitochondrial proton-transporting ATP synthase complex, catalytic core F(1)(GO:0000275)
0.1 0.8 GO:0055038 recycling endosome membrane(GO:0055038)
0.1 0.3 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.1 3.3 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.1 0.6 GO:0005845 mRNA cap binding complex(GO:0005845)
0.1 10.8 GO:0000138 Golgi trans cisterna(GO:0000138)
0.1 4.8 GO:0009504 cell plate(GO:0009504)
0.1 0.6 GO:0031082 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.1 2.4 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.1 1.1 GO:0098827 endoplasmic reticulum tubular network(GO:0071782) endoplasmic reticulum subcompartment(GO:0098827)
0.1 0.4 GO:0030870 Mre11 complex(GO:0030870)
0.1 0.7 GO:0008250 oligosaccharyltransferase complex(GO:0008250)
0.1 1.3 GO:0005769 early endosome(GO:0005769)
0.1 1.5 GO:0005876 spindle microtubule(GO:0005876)
0.1 0.5 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.1 0.8 GO:0072546 ER membrane protein complex(GO:0072546)
0.1 0.7 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.1 0.2 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.1 0.5 GO:0005787 signal peptidase complex(GO:0005787)
0.1 1.1 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.1 1.0 GO:0045273 respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281)
0.1 0.4 GO:0070552 BRISC complex(GO:0070552)
0.1 0.7 GO:0030131 clathrin adaptor complex(GO:0030131)
0.1 1.1 GO:0045275 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.1 0.9 GO:0045239 tricarboxylic acid cycle enzyme complex(GO:0045239)
0.1 1.5 GO:0048475 membrane coat(GO:0030117) coated membrane(GO:0048475)
0.1 0.5 GO:0009513 etioplast(GO:0009513)
0.1 17.9 GO:0048046 apoplast(GO:0048046)
0.1 0.7 GO:0005742 mitochondrial outer membrane translocase complex(GO:0005742)
0.1 0.6 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.1 7.5 GO:0099503 secretory vesicle(GO:0099503)
0.1 0.7 GO:0033179 proton-transporting V-type ATPase, V0 domain(GO:0033179)
0.1 11.2 GO:0005802 trans-Golgi network(GO:0005802)
0.1 0.4 GO:0005968 Rab-protein geranylgeranyltransferase complex(GO:0005968)
0.1 0.5 GO:0016272 prefoldin complex(GO:0016272)
0.0 0.2 GO:0017053 transcriptional repressor complex(GO:0017053)
0.0 0.6 GO:0005786 signal recognition particle, endoplasmic reticulum targeting(GO:0005786)
0.0 40.0 GO:0005794 Golgi apparatus(GO:0005794)
0.0 0.2 GO:0031298 replication fork protection complex(GO:0031298)
0.0 0.7 GO:0000418 DNA-directed RNA polymerase IV complex(GO:0000418)
0.0 1.0 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 0.8 GO:0000794 condensed nuclear chromosome(GO:0000794)
0.0 1.8 GO:0009524 phragmoplast(GO:0009524)
0.0 0.3 GO:0070062 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.0 0.3 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 20.8 GO:0009506 cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044)
0.0 0.8 GO:0005680 anaphase-promoting complex(GO:0005680)
0.0 3.4 GO:0000790 nuclear chromatin(GO:0000790)
0.0 0.1 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.0 1.3 GO:0090406 pollen tube(GO:0090406)
0.0 0.7 GO:0005643 nuclear pore(GO:0005643)
0.0 1.3 GO:0000785 chromatin(GO:0000785)
0.0 0.1 GO:0031372 ubiquitin conjugating enzyme complex(GO:0031371) UBC13-MMS2 complex(GO:0031372)
0.0 1.1 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 3.1 GO:0005789 endoplasmic reticulum membrane(GO:0005789)
0.0 0.3 GO:0031201 SNARE complex(GO:0031201)
0.0 0.5 GO:0000159 protein phosphatase type 2A complex(GO:0000159)
0.0 13.9 GO:0005773 vacuole(GO:0005773)
0.0 1.1 GO:0031225 anchored component of membrane(GO:0031225)
0.0 0.1 GO:0005884 actin filament(GO:0005884)
0.0 3.1 GO:0016021 integral component of membrane(GO:0016021)
0.0 6.1 GO:0005783 endoplasmic reticulum(GO:0005783)
0.0 0.8 GO:0070469 respiratory chain(GO:0070469)
0.0 0.1 GO:0016459 myosin complex(GO:0016459)
0.0 0.3 GO:0005689 U12-type spliceosomal complex(GO:0005689)
0.0 0.1 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 0.2 GO:0000145 exocyst(GO:0000145)
0.0 1.5 GO:0005618 cell wall(GO:0005618) external encapsulating structure(GO:0030312)
0.0 22.9 GO:0005886 plasma membrane(GO:0005886)
0.0 1.0 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 6.2 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
1.1 4.2 GO:0036218 dTTP diphosphatase activity(GO:0036218)
1.0 3.1 GO:0010280 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
1.0 4.9 GO:0003871 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.8 4.2 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.7 4.3 GO:0052691 UDP-arabinopyranose mutase activity(GO:0052691)
0.7 2.1 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.7 2.0 GO:0046409 p-coumarate 3-hydroxylase activity(GO:0046409)
0.7 2.0 GO:0003838 sterol 24-C-methyltransferase activity(GO:0003838)
0.6 1.8 GO:0004421 hydroxymethylglutaryl-CoA synthase activity(GO:0004421)
0.6 3.6 GO:0015105 arsenite transmembrane transporter activity(GO:0015105)
0.6 2.3 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.5 2.1 GO:0004751 ribose-5-phosphate isomerase activity(GO:0004751)
0.5 3.2 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.5 1.8 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.4 1.7 GO:0033862 UMP kinase activity(GO:0033862)
0.4 1.3 GO:0051010 microtubule plus-end binding(GO:0051010)
0.4 2.1 GO:0033843 xyloglucan 6-xylosyltransferase activity(GO:0033843)
0.4 4.4 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.3 1.4 GO:0070182 DNA polymerase binding(GO:0070182)
0.3 2.4 GO:0031177 phosphopantetheine binding(GO:0031177)
0.3 1.0 GO:0004353 glutamate dehydrogenase [NAD(P)+] activity(GO:0004353)
0.3 1.7 GO:0051740 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.3 2.5 GO:0043891 glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity(GO:0004365) glyceraldehyde-3-phosphate dehydrogenase (NAD(P)+) (phosphorylating) activity(GO:0043891)
0.3 1.5 GO:1990825 sequence-specific mRNA binding(GO:1990825)
0.3 2.1 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.3 3.0 GO:0005471 ATP:ADP antiporter activity(GO:0005471)
0.3 1.5 GO:0046624 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.3 1.5 GO:0003785 actin monomer binding(GO:0003785)
0.3 9.8 GO:0005200 structural constituent of cytoskeleton(GO:0005200)
0.3 1.3 GO:0016454 serine C-palmitoyltransferase activity(GO:0004758) C-palmitoyltransferase activity(GO:0016454)
0.3 1.8 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.3 1.3 GO:0004148 dihydrolipoyl dehydrogenase activity(GO:0004148)
0.2 1.0 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.2 3.1 GO:0002020 protease binding(GO:0002020)
0.2 1.6 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.2 0.9 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.2 1.1 GO:0000150 recombinase activity(GO:0000150)
0.2 1.3 GO:0030527 structural constituent of chromatin(GO:0030527)
0.2 2.0 GO:0098847 single-stranded telomeric DNA binding(GO:0043047) sequence-specific single stranded DNA binding(GO:0098847)
0.2 1.7 GO:0046933 proton-transporting ATP synthase activity, rotational mechanism(GO:0046933)
0.2 1.5 GO:0008381 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.2 1.8 GO:0070569 uridylyltransferase activity(GO:0070569)
0.2 0.9 GO:0004333 fumarate hydratase activity(GO:0004333)
0.2 1.4 GO:0008296 3'-5'-exodeoxyribonuclease activity(GO:0008296)
0.2 0.8 GO:0004001 adenosine kinase activity(GO:0004001)
0.2 1.0 GO:0030544 Hsp70 protein binding(GO:0030544)
0.2 0.5 GO:0015292 uniporter activity(GO:0015292)
0.2 0.6 GO:0000340 RNA 7-methylguanosine cap binding(GO:0000340)
0.1 1.0 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.1 0.4 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.1 1.1 GO:0016646 oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor(GO:0016646)
0.1 1.8 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.1 0.6 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.1 1.2 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.1 0.5 GO:0070006 metalloaminopeptidase activity(GO:0070006)
0.1 3.9 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)
0.1 0.6 GO:0030942 endoplasmic reticulum signal peptide binding(GO:0030942)
0.1 0.8 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.1 1.3 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.1 2.4 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.1 0.3 GO:0004571 mannosyl-oligosaccharide 1,2-alpha-mannosidase activity(GO:0004571)
0.1 0.7 GO:0048487 beta-tubulin binding(GO:0048487)
0.1 1.1 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.1 0.9 GO:0030976 thiamine pyrophosphate binding(GO:0030976)
0.1 0.5 GO:0030943 mitochondrion targeting sequence binding(GO:0030943)
0.1 0.4 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.1 1.8 GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism(GO:0044769) proton-transporting ATPase activity, rotational mechanism(GO:0046961)
0.1 2.7 GO:0051219 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.1 4.7 GO:0022884 protein transmembrane transporter activity(GO:0008320) macromolecule transmembrane transporter activity(GO:0022884)
0.1 0.3 GO:0046920 alpha-(1->3)-fucosyltransferase activity(GO:0046920)
0.1 0.5 GO:0005457 GDP-fucose transmembrane transporter activity(GO:0005457)
0.1 0.8 GO:0004017 adenylate kinase activity(GO:0004017)
0.1 4.8 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.1 1.7 GO:1900750 glutathione binding(GO:0043295) oligopeptide binding(GO:1900750)
0.1 1.1 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.1 1.7 GO:0003688 DNA replication origin binding(GO:0003688)
0.1 0.3 GO:0047326 inositol-1,4,5-trisphosphate 6-kinase activity(GO:0000823) inositol tetrakisphosphate 3-kinase activity(GO:0000824) inositol-1,4,5-trisphosphate 3-kinase activity(GO:0008440) inositol tetrakisphosphate 5-kinase activity(GO:0047326) inositol-1,3,4-trisphosphate 6-kinase activity(GO:0052725)
0.1 1.6 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.1 0.8 GO:1990757 ubiquitin ligase activator activity(GO:1990757)
0.1 1.1 GO:0008417 fucosyltransferase activity(GO:0008417)
0.1 0.6 GO:0003746 translation elongation factor activity(GO:0003746)
0.1 1.0 GO:0008139 nuclear localization sequence binding(GO:0008139)
0.1 0.1 GO:0030742 GTP-dependent protein binding(GO:0030742)
0.1 1.0 GO:0015095 magnesium ion transmembrane transporter activity(GO:0015095)
0.1 0.4 GO:0000062 fatty-acyl-CoA binding(GO:0000062)
0.1 0.7 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.1 12.5 GO:0003924 GTPase activity(GO:0003924)
0.1 1.6 GO:0031386 protein tag(GO:0031386)
0.1 2.2 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.1 1.2 GO:0016868 intramolecular transferase activity, phosphotransferases(GO:0016868)
0.1 1.8 GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity(GO:0047262)
0.1 0.9 GO:0016759 cellulose synthase activity(GO:0016759)
0.1 0.4 GO:0004663 Rab geranylgeranyltransferase activity(GO:0004663)
0.1 1.4 GO:0008143 poly(A) binding(GO:0008143)
0.1 1.1 GO:0051787 misfolded protein binding(GO:0051787)
0.1 0.5 GO:0010011 auxin binding(GO:0010011)
0.1 1.0 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.1 0.5 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 2.4 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 2.1 GO:0017137 Rab GTPase binding(GO:0017137)
0.0 1.1 GO:0003756 protein disulfide isomerase activity(GO:0003756) intramolecular oxidoreductase activity, transposing S-S bonds(GO:0016864)
0.0 0.5 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.0 0.6 GO:0031545 procollagen-proline 4-dioxygenase activity(GO:0004656) procollagen-proline dioxygenase activity(GO:0019798) peptidyl-proline 4-dioxygenase activity(GO:0031545)
0.0 0.4 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 0.7 GO:0008536 Ran GTPase binding(GO:0008536)
0.0 2.4 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 1.0 GO:0004568 chitinase activity(GO:0004568)
0.0 0.2 GO:0004376 glycolipid mannosyltransferase activity(GO:0004376)
0.0 0.7 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.0 1.2 GO:0036442 hydrogen-exporting ATPase activity(GO:0036442)
0.0 1.6 GO:0019001 GTP binding(GO:0005525) guanyl nucleotide binding(GO:0019001) guanyl ribonucleotide binding(GO:0032561)
0.0 0.5 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.5 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.9 GO:0031072 heat shock protein binding(GO:0031072)
0.0 0.5 GO:0044183 protein binding involved in protein folding(GO:0044183)
0.0 4.1 GO:0009055 electron carrier activity(GO:0009055)
0.0 1.3 GO:0045735 nutrient reservoir activity(GO:0045735)
0.0 0.8 GO:0004805 trehalose-phosphatase activity(GO:0004805)
0.0 0.3 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.9 GO:0097602 cullin family protein binding(GO:0097602)
0.0 1.7 GO:0005484 SNAP receptor activity(GO:0005484)
0.0 0.2 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.0 0.7 GO:0051539 4 iron, 4 sulfur cluster binding(GO:0051539)
0.0 0.3 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 1.5 GO:0009931 calmodulin-dependent protein kinase activity(GO:0004683) calcium-dependent protein serine/threonine kinase activity(GO:0009931) calcium-dependent protein kinase activity(GO:0010857)
0.0 3.5 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 1.1 GO:0004222 metalloendopeptidase activity(GO:0004222)
0.0 2.1 GO:0051082 unfolded protein binding(GO:0051082)
0.0 0.4 GO:0035064 methylated histone binding(GO:0035064)
0.0 8.0 GO:0005198 structural molecule activity(GO:0005198)
0.0 0.1 GO:0004829 threonine-tRNA ligase activity(GO:0004829)
0.0 0.1 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.0 0.8 GO:0005085 guanyl-nucleotide exchange factor activity(GO:0005085)
0.0 0.8 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 1.4 GO:0003777 microtubule motor activity(GO:0003777)
0.0 0.3 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.0 0.6 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.4 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.1 GO:0004550 nucleoside diphosphate kinase activity(GO:0004550)
0.0 0.1 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 3.6 GO:0005509 calcium ion binding(GO:0005509)
0.0 1.0 GO:0008017 microtubule binding(GO:0008017)
0.0 0.7 GO:0003899 DNA-directed RNA polymerase activity(GO:0003899)
0.0 0.2 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 0.6 GO:0004712 protein serine/threonine/tyrosine kinase activity(GO:0004712)
0.0 0.9 GO:0003724 RNA helicase activity(GO:0003724)
0.0 0.4 GO:0050135 NAD(P)+ nucleosidase activity(GO:0050135)
0.0 0.7 GO:0016811 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides(GO:0016811)
0.0 0.6 GO:0032182 ubiquitin-like protein binding(GO:0032182) ubiquitin binding(GO:0043130)
0.0 0.4 GO:0003684 damaged DNA binding(GO:0003684)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 SA CASPASE CASCADE Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade.
0.3 1.0 SIG CHEMOTAXIS Genes related to chemotaxis
0.2 0.2 SIG REGULATION OF THE ACTIN CYTOSKELETON BY RHO GTPASES Genes related to regulation of the actin cytoskeleton
0.1 0.5 PID BETA CATENIN NUC PATHWAY Regulation of nuclear beta catenin signaling and target gene transcription
0.1 0.2 PID PI3KCI PATHWAY Class I PI3K signaling events
0.1 0.4 PID PLK1 PATHWAY PLK1 signaling events
0.0 0.1 SA G1 AND S PHASES Cdk2, 4, and 6 bind cyclin D in G1, while cdk2/cyclin E promotes the G1/S transition.

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.3 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import
0.3 0.6 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.3 1.3 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.3 1.5 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
0.3 0.8 REACTOME PURINE METABOLISM Genes involved in Purine metabolism
0.3 0.8 REACTOME INTRINSIC PATHWAY FOR APOPTOSIS Genes involved in Intrinsic Pathway for Apoptosis
0.2 0.5 REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION Genes involved in Cyclin E associated events during G1/S transition
0.1 0.7 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.1 0.3 REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE Genes involved in Synthesis of PIPs at the Golgi membrane
0.1 0.2 REACTOME SIGNALING BY ROBO RECEPTOR Genes involved in Signaling by Robo receptor
0.1 1.1 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination
0.1 0.7 REACTOME SIGNALING BY RHO GTPASES Genes involved in Signaling by Rho GTPases
0.1 0.6 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 1.0 REACTOME INFLUENZA VIRAL RNA TRANSCRIPTION AND REPLICATION Genes involved in Influenza Viral RNA Transcription and Replication
0.0 0.2 REACTOME M G1 TRANSITION Genes involved in M/G1 Transition
0.0 0.5 REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS Genes involved in Metabolism of lipids and lipoproteins