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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G53200
Z-value: 0.93
Transcription factors associated with AT3G53200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G53200
|
AT3G53200 | myb domain protein 27 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB27 | arTal_v1_Chr3_-_19719507_19719507 | -0.30 | 3.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 1.59 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr1_-_7553975_7553975 Show fit | 1.54 |
AT1G21550.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr5_-_8175431_8175525 Show fit | 1.47 |
AT5G24150.2
AT5G24150.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
| arTal_v1_Chr5_+_19183523_19183571 Show fit | 1.47 |
AT5G47240.2
AT5G47240.1 |
nudix hydrolase homolog 8 |
|
| arTal_v1_Chr2_-_15421866_15421866 Show fit | 1.40 |
AT2G36790.1
|
UDP-glucosyl transferase 73C6 |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 1.38 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr1_+_8544248_8544308 Show fit | 1.37 |
AT1G24148.1
AT1G24148.2 |
hypothetical protein |
|
| arTal_v1_Chr1_-_24558322_24558322 Show fit | 1.26 |
AT1G65970.1
|
thioredoxin-dependent peroxidase 2 |
|
| arTal_v1_Chr4_+_11150049_11150049 Show fit | 1.22 |
AT4G20820.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_12585856_12585856 Show fit | 1.20 |
AT2G29290.1
AT2G29290.2 |
NAD(P)-binding Rossmann-fold superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G53200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.6 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.0 | 2.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 1.6 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 1.5 | GO:0051553 | flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555) |
| 0.1 | 1.4 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.4 | 1.3 | GO:0090224 | regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224) |
| 0.2 | 1.3 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.1 | 1.3 | GO:0015749 | monosaccharide transport(GO:0015749) |
| 0.1 | 1.3 | GO:0009862 | systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862) |
| 0.0 | 1.3 | GO:0043622 | cortical microtubule organization(GO:0043622) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.1 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.1 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.1 | 1.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 0.8 | GO:0010005 | cortical microtubule, transverse to long axis(GO:0010005) |
| 0.0 | 0.8 | GO:0005871 | kinesin complex(GO:0005871) |
| 0.1 | 0.7 | GO:0005960 | glycine cleavage complex(GO:0005960) |
| 0.1 | 0.7 | GO:1902562 | NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562) |
| 0.2 | 0.6 | GO:0043673 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.1 | 0.5 | GO:0000153 | cytoplasmic ubiquitin ligase complex(GO:0000153) |
| 0.0 | 0.5 | GO:0000127 | transcription factor TFIIIC complex(GO:0000127) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 2.6 | GO:0008732 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.0 | 2.1 | GO:0046982 | protein heterodimerization activity(GO:0046982) |
| 0.2 | 1.5 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 1.5 | GO:0047631 | ADP-ribose diphosphatase activity(GO:0047631) |
| 0.2 | 1.4 | GO:0080046 | quercetin 4'-O-glucosyltransferase activity(GO:0080046) |
| 0.1 | 1.3 | GO:0008379 | thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920) |
| 0.1 | 1.3 | GO:0009815 | 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815) |
| 0.1 | 1.3 | GO:0010427 | abscisic acid binding(GO:0010427) |
| 0.4 | 1.2 | GO:0004476 | mannose-6-phosphate isomerase activity(GO:0004476) |
| 0.1 | 1.1 | GO:0031176 | endo-1,4-beta-xylanase activity(GO:0031176) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.3 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.5 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.3 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.3 | PID BARD1 PATHWAY | BARD1 signaling events |
| 0.1 | 0.2 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.0 | 0.2 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.3 | REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER | Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer |
| 0.1 | 0.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.0 | 0.3 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.1 | 0.2 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
| 0.0 | 0.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.2 | REACTOME GLUCOSE METABOLISM | Genes involved in Glucose metabolism |
| 0.0 | 0.1 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.0 | 0.1 | REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN | Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein |
| 0.0 | 0.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |