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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G53200

Z-value: 0.93

Transcription factors associated with AT3G53200

Gene Symbol Gene ID Gene Info
AT3G53200
AT3G53200 myb domain protein 27

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MYB27arTal_v1_Chr3_-_19719507_19719507-0.303.0e-01Click!

Activity profile of AT3G53200 motif

Sorted Z-values of AT3G53200 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_-_15135169 1.59 AT5G37990.1
AT5G37990
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein
Chr1_-_7553975 1.54 AT1G21550.1
AT1G21550
Calcium-binding EF-hand family protein
Chr5_-_8175431 1.47 AT5G24150.2
AT5G24150.1
SQP1
FAD/NAD(P)-binding oxidoreductase family protein
Chr5_+_19183523 1.47 AT5G47240.2
AT5G47240.1
NUDT8
nudix hydrolase homolog 8
Chr2_-_15421866 1.40 AT2G36790.1
UGT73C6
UDP-glucosyl transferase 73C6
Chr1_+_9829261 1.38 AT1G28135.1
AT1G28135
hypothetical protein
Chr1_+_8544248 1.37 AT1G24148.1
AT1G24148.2
AT1G24148
hypothetical protein
Chr1_-_24558322 1.26 AT1G65970.1
TPX2
thioredoxin-dependent peroxidase 2
Chr4_+_11150049 1.22 AT4G20820.1
AT4G20820
FAD-binding Berberine family protein
Chr2_+_12585856 1.20 AT2G29290.1
AT2G29290.2
AT2G29290
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_6566271 1.11 AT5G19470.1
AT5G19470.2
NUDT24
nudix hydrolase homolog 24
Chr1_+_27670626 1.10 AT1G73600.1
AT1G73600
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_2747936 1.05 AT1G08630.6
AT1G08630.7
AT1G08630.5
AT1G08630.2
THA1
threonine aldolase 1
Chr2_+_3618058 1.04 AT2G08986.1
AT2G08986
hypothetical protein
Chr5_-_19807853 1.03 AT5G48850.1
ATSDI1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_19428888 1.02 AT5G47980.1
AT5G47980
HXXXD-type acyl-transferase family protein
Chr2_+_17409370 1.01 AT2G41730.1
AT2G41730
calcium-binding site protein
Chr1_+_27669152 1.00 AT1G73600.2
AT1G73600
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_18373147 1.00 AT3G49570.1
LSU3
response to low sulfur 3
Chr1_+_24824356 1.00 AT1G66540.1
AT1G66540.2
AT1G66540
Cytochrome P450 superfamily protein
Chr5_-_25661007 0.99 AT5G64120.1
AT5G64120
Peroxidase superfamily protein
Chr5_-_7828724 0.94 AT5G23240.1
AT5G23240
DNAJ heat shock N-terminal domain-containing protein
Chr1_+_20525654 0.94 AT1G55020.1
LOX1
lipoxygenase 1
Chr3_+_6465748 0.93 AT3G18773.1
AT3G18773
RING/U-box superfamily protein
Chr2_+_13658888 0.92 AT2G32150.1
AT2G32150.2
AT2G32150.3
AT2G32150
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr5_-_19249622 0.91 AT5G47450.1
TIP2%3B3
tonoplast intrinsic protein 2;3
Chr1_-_19052582 0.88 AT1G51400.1
AT1G51400
Photosystem II 5 kD protein
Chr3_+_5337475 0.88 AT3G15760.1
AT3G15760
cytochrome P450 family protein
Chr3_+_5588459 0.85 AT3G16450.3
AT3G16450.1
JAL33
Mannose-binding lectin superfamily protein
Chr5_+_6282881 0.84 AT5G18840.1
AT5G18840
Major facilitator superfamily protein
Chr1_-_27265806 0.83 AT1G72430.1
AT1G72430
SAUR-like auxin-responsive protein family
Chr3_+_5588292 0.83 AT3G16450.2
JAL33
Mannose-binding lectin superfamily protein
Chr4_+_2324878 0.83 AT4G04610.1
APR1
APS reductase 1
Chr4_+_15676240 0.80 AT4G32480.1
AT4G32480
sugar phosphate exchanger, putative (DUF506)
Chr2_+_12326808 0.79 AT2G28720.1
AT2G28720
Histone superfamily protein
Chr1_+_11931149 0.78 AT1G32928.1
AT1G32928
Avr9/Cf-9 rapidly elicited protein
Chr3_-_826585 0.77 AT3G03470.1
CYP89A9
cytochrome P450, family 87, subfamily A, polypeptide 9
Chr5_+_5237970 0.77 AT5G16030.1
AT5G16030.4
AT5G16030.2
AT5G16030.3
AT5G16030
mental retardation GTPase activating protein
Chr5_-_18954692 0.74 AT5G46710.1
AT5G46710.2
AT5G46710.3
AT5G46710
PLATZ transcription factor family protein
Chr5_+_9656949 0.73 AT5G27360.3
AT5G27360.2
AT5G27360.1
AT5G27360.4
SFP2
Major facilitator superfamily protein
Chr2_-_9741463 0.73 AT2G22880.1
AT2G22880
VQ motif-containing protein
Chr3_-_16479559 0.73 AT3G45060.1
NRT2.6
high affinity nitrate transporter 2.6
Chr1_+_25041833 0.72 AT1G67070.1
AT1G67070.2
DIN9
Mannose-6-phosphate isomerase, type I
Chr5_+_25939562 0.72 AT5G64905.1
PROPEP3
elicitor peptide 3 precursor
Chr5_+_7168106 0.72 AT5G21100.1
AT5G21100
Plant L-ascorbate oxidase
Chr1_-_8310916 0.71 AT1G23390.1
AT1G23390
Kelch repeat-containing F-box family protein
Chr4_-_15931332 0.70 AT4G33010.2
AT4G33010.1
GLDP1
glycine decarboxylase P-protein 1
Chr1_-_16838562 0.69 AT1G44350.1
ILL6
IAA-amino acid hydrolase ILR1-like 6
Chr5_+_21389766 0.69 AT5G52770.1
AT5G52770
Copper transport protein family
Chr5_-_26906517 0.67 AT5G67420.1
AT5G67420.2
LBD37
LOB domain-containing protein 37
Chr5_-_17458800 0.67 AT5G43450.2
AT5G43450
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_-_17458980 0.67 AT5G43450.1
AT5G43450
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_5238502 0.66 AT5G16030.5
AT5G16030
mental retardation GTPase activating protein
Chr3_-_19197334 0.66 AT3G51750.1
AT3G51750.2
AT3G51750.3
AT3G51750
hypothetical protein
Chr1_-_11801407 0.66 AT1G32640.1
MYC2
Basic helix-loop-helix (bHLH) DNA-binding family protein
Chr3_-_1462917 0.65 AT3G05165.4
AT3G05165.1
AT3G05165.6
AT3G05165.3
AT3G05165.5
AT3G05165.2
AT3G05165
Major facilitator superfamily protein
Chr3_+_20354351 0.64 AT3G54940.3
AT3G54940.2
AT3G54940
Papain family cysteine protease
Chr1_+_24637196 0.64 AT1G66160.2
AT1G66160.1
CMPG1
CYS, MET, PRO, and GLY protein 1
Chr2_-_13631929 0.63 AT2G32020.1
AT2G32020
Acyl-CoA N-acyltransferases (NAT) superfamily protein
Chr3_+_20776220 0.63 AT3G55980.2
AT3G55980.1
SZF1
salt-inducible zinc finger 1
Chr5_-_16195751 0.63 AT5G40450.2
AT5G40450.1
AT5G40450
A-kinase anchor-like protein
Chr5_-_17025361 0.62 AT5G42580.1
CYP705A12
cytochrome P450, family 705, subfamily A, polypeptide 12
Chr5_-_3993767 0.62 AT5G12340.2
AT5G12340
DUF4228 domain protein
Chr5_-_20016857 0.61 AT5G49360.1
BXL1
beta-xylosidase 1
Chr2_-_16950705 0.61 AT2G40610.1
EXPA8
expansin A8
Chr3_+_17867131 0.59 AT3G48240.1
AT3G48240
Octicosapeptide/Phox/Bem1p family protein
Chr4_-_7736745 0.58 AT4G13280.1
AT4G13280.2
TPS12
terpenoid synthase 12
Chr4_+_17752079 0.58 AT4G37770.1
ACS8
1-amino-cyclopropane-1-carboxylate synthase 8
Chr4_-_7893727 0.58 AT4G13575.1
AT4G13575.2
AT4G13575
hypothetical protein
Chr4_-_18459257 0.58 AT4G39780.1
AT4G39780
Integrase-type DNA-binding superfamily protein
Chr4_-_17550257 0.57 AT4G37290.1
AT4G37290
transmembrane protein
Chr3_-_9723904 0.57 AT3G26520.1
TIP2
tonoplast intrinsic protein 2
Chr4_+_17388649 0.57 AT4G36900.1
RAP2.10
related to AP2 10
Chr4_-_3950602 0.57 AT4G06700.1
AT4G06700

Chr2_-_13946790 0.57 AT2G32870.1
AT2G32870.2
AT2G32870
TRAF-like family protein
Chr2_+_18253610 0.57 AT2G44130.1
AT2G44130
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_22628264 0.56 AT1G61340.1
AT1G61340.2
FBS1
F-box family protein
Chr1_-_6283348 0.55 AT1G18265.1
AT1G18265
zein-binding protein (Protein of unknown function, DUF593)
Chr2_+_12597018 0.54 AT2G29340.2
AT2G29340.1
AT2G29340.3
AT2G29340.4
AT2G29340
NAD-dependent epimerase/dehydratase family protein
Chr1_+_28253890 0.54 AT1G75290.1
AT1G75290
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_-_17777445 0.54 AT4G37800.1
XTH7
xyloglucan endotransglucosylase/hydrolase 7
Chr1_-_2747243 0.54 AT1G08630.1
THA1
threonine aldolase 1
Chr5_-_26126560 0.53 AT5G65380.1
AT5G65380
MATE efflux family protein
Chr5_+_24707445 0.53 AT5G61440.2
AT5G61440.1
ACHT5
atypical CYS HIS rich thioredoxin 5
Chr1_-_18617155 0.53 AT1G50250.1
FTSH1
FTSH protease 1
Chr2_+_18333370 0.53 AT2G44430.1
AT2G44430
DNA-binding bromodomain-containing protein
Chr2_-_14322082 0.53 AT2G33850.1
AT2G33850
E6-like protein
Chr5_+_9648508 0.52 AT5G27350.1
SFP1
Major facilitator superfamily protein
Chr1_+_28253722 0.52 AT1G75290.2
AT1G75290
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_26474786 0.52 AT1G70290.2
AT1G70290.1
TPS8
trehalose-6-phosphatase synthase S8
Chr4_+_7480556 0.51 AT4G12690.2
AT4G12690.1
AT4G12690
DUF868 family protein (DUF868)
Chr3_+_604785 0.51 AT3G02790.1
AT3G02790
zinc finger (C2H2 type) family protein
Chr4_-_2234689 0.51 AT4G04490.1
CRK36
cysteine-rich RLK (RECEPTOR-like protein kinase) 36
Chr5_-_3993610 0.51 AT5G12340.1
AT5G12340
DUF4228 domain protein
Chr1_+_5596633 0.51 AT1G16370.1
OCT6
organic cation/carnitine transporter 6
Chr3_+_8657736 0.51 AT3G23960.1
AT3G23960
F-box and associated interaction domains-containing protein
Chr1_+_25042135 0.51 AT1G67070.3
DIN9
Mannose-6-phosphate isomerase, type I
Chr3_+_3694956 0.51 AT3G11690.1
AT3G11690
hypothetical protein
Chr5_-_19817831 0.51 AT5G48880.3
AT5G48880.4
AT5G48880.1
AT5G48880.2
KAT5
peroxisomal 3-keto-acyl-CoA thiolase 2
Chr2_+_15514923 0.51 AT2G36950.1
AT2G36950
Heavy metal transport/detoxification superfamily protein
Chr3_+_4810888 0.51 AT3G14395.1
AT3G14395
hypothetical protein
Chr3_-_2807055 0.51 AT3G09160.1
AT3G09160
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_-_26770175 0.51 AT1G71000.1
AT1G71000.2
AT1G71000
Chaperone DnaJ-domain superfamily protein
Chr1_+_19619724 0.50 AT1G52690.2
AT1G52690.1
LEA7
Late embryogenesis abundant protein (LEA) family protein
Chr1_+_4515464 0.50 AT1G13220.3
AT1G13220.1
AT1G13220.2
LINC2
nuclear matrix constituent protein-like protein
Chr3_-_17337733 0.50 AT3G47070.1
AT3G47070
thylakoid soluble phosphoprotein
Chr5_+_4218786 0.50 AT5G13220.5
AT5G13220.1
AT5G13220.3
AT5G13220.2
AT5G13220.6
AT5G13220.7
AT5G13220.4
JAZ10
jasmonate-zim-domain protein 10
Chr1_+_786832 0.50 AT1G03220.1
AT1G03220
Eukaryotic aspartyl protease family protein
Chr1_-_2282828 0.49 AT1G07430.1
HAI2
highly ABA-induced PP2C protein 2
Chr1_+_2867203 0.49 AT1G08920.1
AT1G08920.2
AT1G08920.3
ESL1
ERD (early response to dehydration) six-like 1
Chr1_+_3999157 0.49 AT1G11850.2
AT1G11850.4
AT1G11850.3
AT1G11850.1
AT1G11850
transmembrane protein
Chr2_+_15445294 0.49 AT2G36830.1
GAMMA-TIP
gamma tonoplast intrinsic protein
Chr1_-_2746740 0.49 AT1G08630.3
THA1
threonine aldolase 1
Chr1_-_21474602 0.49 AT1G58037.1
AT1G58037.2
AT1G58037
Cysteine/Histidine-rich C1 domain family protein
Chr1_+_17203685 0.49 AT1G46120.1
AT1G46120

Chr1_-_2746526 0.49 AT1G08630.4
THA1
threonine aldolase 1
Chr5_+_5161724 0.49 AT5G15820.1
AT5G15820
RING/U-box superfamily protein
Chr1_-_6677680 0.48 AT1G19310.1
AT1G19310
RING/U-box superfamily protein
Chr3_+_16123426 0.48 AT3G44540.1
AT3G44540.3
FAR4
fatty acid reductase 4
Chr5_-_4626782 0.47 AT5G14345.1
ENODL21
early nodulin-like protein 21
Chr5_+_9658422 0.47 AT5G27360.5
SFP2
Major facilitator superfamily protein
Chr2_-_16198577 0.47 AT2G38750.1
ANNAT4
annexin 4
Chr1_-_436922 0.47 AT1G02230.1
NAC004
NAC domain containing protein 4
Chr4_+_9928587 0.47 AT4G17870.1
PYR1
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr5_-_3517035 0.47 AT5G11070.1
AT5G11070
hypothetical protein
Chr4_-_17355891 0.46 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
AT4G36850
PQ-loop repeat family protein / transmembrane family protein
Chr5_-_671687 0.46 AT5G02890.1
AT5G02890
HXXXD-type acyl-transferase family protein
Chr2_-_16198832 0.46 AT2G38750.2
ANNAT4
annexin 4
Chr1_-_20967162 0.46 AT1G56060.2
AT1G56060.1
AT1G56060
cysteine-rich/transmembrane domain protein B
Chr5_+_22175461 0.46 AT5G54585.1
AT5G54585
hypothetical protein
Chr1_-_24171502 0.45 AT1G65060.2
AT1G65060.1
4CL3
4-coumarate:CoA ligase 3
Chr5_+_22196287 0.45 AT5G54640.1
RAT5
Histone superfamily protein
Chr5_+_23420184 0.45 AT5G57800.1
CER3
Fatty acid hydroxylase superfamily
Chr1_-_28284036 0.45 AT1G75380.3
AT1G75380.1
AT1G75380.2
AT1G75380.4
BBD1
bifunctional nuclease in basal defense response 1
Chr1_-_5003637 0.45 AT1G14600.1
AT1G14600
Homeodomain-like superfamily protein
Chr5_+_20722069 0.45 AT5G50930.1
AT5G50930
Histone superfamily protein
Chr5_-_22030060 0.44 AT5G54250.2
AT5G54250.1
AT5G54250.4
AT5G54250.3
CNGC4
cyclic nucleotide-gated cation channel 4
Chr4_-_7301646 0.44 AT4G12275.1
AT4G12275

Chr5_+_5497524 0.44 AT5G16730.1
AT5G16730
weak chloroplast movement under blue light protein (DUF827)
Chr2_+_1071453 0.44 AT2G03530.3
AT2G03530.1
AT2G03530.5
AT2G03530.4
UPS2
ureide permease 2
Chr5_-_9247540 0.44 AT5G26340.1
MSS1
Major facilitator superfamily protein
Chr4_-_14009287 0.44 AT4G28270.1
RMA2
RING membrane-anchor 2
Chr4_+_5448049 0.44 AT4G08555.1
AT4G08555
hypothetical protein
Chr5_-_16135347 0.44 AT5G40340.2
AT5G40340.1
AT5G40340
Tudor/PWWP/MBT superfamily protein
Chr1_+_8006064 0.44 AT1G22640.1
AT1G22640.2
MYB3
myb domain protein 3
Chr1_-_11116195 0.44 AT1G31130.1
AT1G31130
polyadenylate-binding protein 1-B-binding protein
Chr3_-_5297851 0.44 AT3G15630.1
AT3G15630
plant/protein
Chr1_+_2032338 0.44 AT1G06640.3
AT1G06640.2
AT1G06640
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_23577329 0.43 AT1G63580.1
AT1G63580
Receptor-like protein kinase-related family protein
Chr5_-_17962276 0.43 AT5G44568.1
AT5G44568
transmembrane protein
Chr3_+_8743113 0.43 AT3G24190.1
AT3G24190
Protein kinase superfamily protein
Chr4_+_11907355 0.43 AT4G22620.1
AT4G22620
SAUR-like auxin-responsive protein family
Chr4_+_16521861 0.43 AT4G34590.1
GBF6
G-box binding factor 6
Chr4_+_10021786 0.43 AT4G18050.2
ABCB9
P-glycoprotein 9
Chr1_-_2007212 0.43 AT1G06550.1
AT1G06550
ATP-dependent caseinolytic (Clp) protease/crotonase family protein
Chr5_+_7470328 0.42 AT5G22500.1
AT5G22500.2
FAR1
fatty acid reductase 1
Chr1_-_9935264 0.42 AT1G28330.3
AT1G28330.2
AT1G28330.4
AT1G28330.1
AT1G28330.6
AT1G28330.5
DYL1
dormancy-associated protein-like 1
Chr1_-_3328448 0.42 AT1G10155.1
PP2-A10
phloem protein 2-A10
Chr1_-_4026733 0.42 AT1G11925.1
AT1G11925
Stigma-specific Stig1 family protein
Chr5_-_8011611 0.42 AT5G23750.2
AT5G23750.3
AT5G23750.1
AT5G23750
Remorin family protein
Chr1_+_11738118 0.42 AT1G32460.1
AT1G32460
hypothetical protein
Chr1_-_19789029 0.42 AT1G53100.2
AT1G53100.1
AT1G53100
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr1_+_2031626 0.42 AT1G06640.1
AT1G06640
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_+_8006423 0.42 AT1G22640.3
MYB3
myb domain protein 3
Chr4_-_13435723 0.42 AT4G26630.2
AT4G26630.1
AT4G26630
DEK domain-containing chromatin associated protein
Chr5_-_18591474 0.42 AT5G45830.3
AT5G45830.2
AT5G45830.6
AT5G45830.4
AT5G45830.1
AT5G45830.5
DOG1
delay of germination 1
Chr5_-_573634 0.41 AT5G02550.1
AT5G02550
hypothetical protein
Chr5_-_23085246 0.41 AT5G57040.1
AT5G57040
Lactoylglutathione lyase / glyoxalase I family protein
Chr5_-_7250770 0.41 AT5G21940.1
AT5G21940
hybrid signal transduction histidine kinase M-like protein
Chr1_+_2169977 0.41 AT1G07080.1
AT1G07080
Thioredoxin superfamily protein
Chr2_-_6710856 0.41 AT2G15390.1
FUT4
fucosyltransferase 4
Chr5_+_16151772 0.41 AT5G40380.3
AT5G40380.2
CRK42
cysteine-rich RLK (RECEPTOR-like protein kinase) 42
Chr1_-_20219452 0.41 AT1G54160.1
NF-YA5
nuclear factor Y, subunit A5
Chr4_+_10022205 0.41 AT4G18050.1
ABCB9
P-glycoprotein 9
Chr4_-_5162774 0.41 AT4G08160.2
AT4G08160.1
AT4G08160
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
Chr3_+_20896332 0.41 AT3G56360.1
AT3G56360
hypothetical protein
Chr1_+_3777236 0.40 AT1G11260.1
STP1
sugar transporter 1
Chr3_+_15993259 0.40 AT3G44320.1
NIT3
nitrilase 3
Chr3_-_8290164 0.40 AT3G23230.1
TDR1
Integrase-type DNA-binding superfamily protein
Chr2_-_10487749 0.39 AT2G24650.1
AT2G24650.7
AT2G24650.2
AT2G24650.5
AT2G24650.4
AT2G24650.3
AT2G24650
B3 domain-containing protein REM13
Chr5_+_13419080 0.39 AT5G35170.1
AT5G35170.2
AT5G35170
adenylate kinase family protein
Chr1_+_23200591 0.39 AT1G62660.4
AT1G62660
Glycosyl hydrolases family 32 protein
Chr3_+_5571903 0.39 AT3G16410.1
NSP4
nitrile specifier protein 4
Chr5_-_22024658 0.39 AT5G54240.1
AT5G54240
membrane lipoprotein lipid attachment site-like protein, putative (DUF1223)
Chr5_+_21386727 0.39 AT5G52760.1
AT5G52760.2
AT5G52760
Copper transport protein family
Chr1_+_23199612 0.39 AT1G62660.2
AT1G62660.1
AT1G62660.3
AT1G62660
Glycosyl hydrolases family 32 protein
Chr3_-_1257017 0.39 AT3G04620.1
DAN1
Alba DNA/RNA-binding protein
Chr1_-_7940625 0.39 AT1G22490.2
AT1G22490
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_8122784 0.38 AT5G24030.2
AT5G24030.1
SLAH3
SLAC1 homologue 3
Chr5_+_2237474 0.38 AT5G07190.1
AT5G07190.2
ATS3
embryo-specific protein 3
Chr3_+_18933751 0.38 AT3G50940.1
AT3G50940
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr2_-_12993269 0.38 AT2G30480.13
AT2G30480.2
AT2G30480.5
AT2G30480.10
AT2G30480.9
AT2G30480.3
AT2G30480.7
AT2G30480.8
AT2G30480
hypothetical protein
Chr4_+_16295334 0.38 AT4G34000.2
AT4G34000.4
AT4G34000.3
AT4G34000.1
ABF3
abscisic acid responsive elements-binding factor 3
Chr1_-_25156389 0.38 AT1G67230.1
LINC1
little nuclei1
Chr4_+_18185437 0.38 AT4G39030.1
EDS5
MATE efflux family protein
Chr3_+_16124021 0.38 AT3G44540.2
FAR4
fatty acid reductase 4
Chr3_-_21303230 0.38 AT3G57540.1
AT3G57540
Remorin family protein
Chr2_+_12081023 0.38 AT2G28305.1
AT2G28305.3
AT2G28305.2
LOG1
Putative lysine decarboxylase family protein
Chr2_-_265948 0.38 AT2G01580.1
AT2G01580
transmembrane protein
Chr2_+_3514668 0.37 AT2G07680.2
AT2G07680.3
AT2G07680.4
AT2G07680.1
AT2G07680.5
ABCC13
multidrug resistance-associated protein 11

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G53200

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 2.6 GO:0006567 threonine catabolic process(GO:0006567)
0.4 1.3 GO:0090224 regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224)
0.4 1.2 GO:0006056 cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506)
0.3 1.1 GO:0080170 hydrogen peroxide transmembrane transport(GO:0080170)
0.2 1.0 GO:0007063 regulation of sister chromatid cohesion(GO:0007063)
0.2 0.7 GO:0050687 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.2 1.2 GO:0000301 retrograde transport, vesicle recycling within Golgi(GO:0000301)
0.2 0.7 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.2 0.9 GO:0097298 regulation of nucleus size(GO:0097298)
0.2 1.0 GO:0019419 sulfate reduction(GO:0019419)
0.2 1.3 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.2 0.7 GO:0015720 allantoin transport(GO:0015720)
0.2 0.5 GO:0010124 phenylacetate catabolic process(GO:0010124)
0.2 0.7 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.2 0.7 GO:0043618 regulation of transcription from RNA polymerase II promoter in response to stress(GO:0043618)
0.1 0.5 GO:0099636 cytoplasmic streaming(GO:0099636)
0.1 1.0 GO:0009061 anaerobic respiration(GO:0009061)
0.1 0.4 GO:0010198 synergid death(GO:0010198)
0.1 0.4 GO:0045905 positive regulation of translational elongation(GO:0045901) positive regulation of translational termination(GO:0045905)
0.1 0.5 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.1 1.3 GO:0015749 monosaccharide transport(GO:0015749)
0.1 0.2 GO:0080182 histone H3-K4 trimethylation(GO:0080182)
0.1 0.4 GO:0016120 carotene biosynthetic process(GO:0016120)
0.1 0.7 GO:0019464 glycine decarboxylation via glycine cleavage system(GO:0019464)
0.1 0.7 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.1 0.6 GO:0043447 alkane biosynthetic process(GO:0043447)
0.1 0.8 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.1 0.3 GO:0010432 bract development(GO:0010432)
0.1 1.5 GO:0051553 flavone biosynthetic process(GO:0051553) flavonol biosynthetic process(GO:0051555)
0.1 0.7 GO:0071249 cellular response to nitrate(GO:0071249)
0.1 0.2 GO:0046166 glyceraldehyde-3-phosphate biosynthetic process(GO:0046166)
0.1 0.6 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.1 0.6 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.1 0.9 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.1 0.6 GO:0031222 arabinan catabolic process(GO:0031222)
0.1 0.7 GO:0051410 detoxification of nitrogen compound(GO:0051410)
0.1 0.4 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.1 0.2 GO:0010069 zygote asymmetric cytokinesis in embryo sac(GO:0010069)
0.1 0.4 GO:1900367 positive regulation of defense response to insect(GO:1900367)
0.1 0.3 GO:0007043 cell-cell junction assembly(GO:0007043)
0.1 1.4 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.1 0.2 GO:0034625 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.1 1.0 GO:0045493 xylan catabolic process(GO:0045493)
0.1 0.2 GO:0002215 defense response to nematode(GO:0002215)
0.1 0.4 GO:0015846 polyamine transport(GO:0015846)
0.1 0.3 GO:0000084 mitotic G1 phase(GO:0000080) mitotic S phase(GO:0000084) mitotic G2 phase(GO:0000085) G1 phase(GO:0051318) G2 phase(GO:0051319) S phase(GO:0051320) interphase(GO:0051325) mitotic interphase(GO:0051329)
0.1 0.2 GO:0002100 tRNA wobble adenosine to inosine editing(GO:0002100)
0.1 0.6 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.1 0.2 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.1 0.4 GO:0010018 far-red light signaling pathway(GO:0010018)
0.1 0.2 GO:0010351 lithium ion transport(GO:0010351)
0.1 0.2 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.1 0.2 GO:0048833 specification of organ number(GO:0048832) specification of floral organ number(GO:0048833)
0.1 0.5 GO:0010304 PSII associated light-harvesting complex II catabolic process(GO:0010304)
0.1 1.3 GO:0009862 systemic acquired resistance, salicylic acid mediated signaling pathway(GO:0009862)
0.1 0.2 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.1 0.2 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.1 0.2 GO:0009915 phloem sucrose loading(GO:0009915)
0.1 0.3 GO:0043692 monoterpene metabolic process(GO:0043692)
0.1 0.2 GO:0010213 non-photoreactive DNA repair(GO:0010213)
0.0 0.2 GO:0006097 glyoxylate cycle(GO:0006097)
0.0 0.5 GO:1902584 positive regulation of response to water deprivation(GO:1902584)
0.0 0.1 GO:0044277 cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277)
0.0 0.2 GO:0010500 transmitting tissue development(GO:0010500)
0.0 0.6 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.0 0.2 GO:0016255 attachment of GPI anchor to protein(GO:0016255)
0.0 0.5 GO:0010077 maintenance of inflorescence meristem identity(GO:0010077)
0.0 1.6 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.6 GO:0045338 farnesyl diphosphate metabolic process(GO:0045338)
0.0 0.2 GO:0006552 leucine catabolic process(GO:0006552)
0.0 0.2 GO:0009303 rRNA transcription(GO:0009303)
0.0 0.2 GO:0010482 epidermal cell division(GO:0010481) regulation of epidermal cell division(GO:0010482)
0.0 0.8 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.0 0.2 GO:0080175 phragmoplast microtubule organization(GO:0080175)
0.0 0.2 GO:0048629 trichome patterning(GO:0048629)
0.0 0.1 GO:0033477 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.0 0.2 GO:0000256 allantoin catabolic process(GO:0000256)
0.0 0.6 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.2 GO:2000114 regulation of establishment of cell polarity(GO:2000114)
0.0 0.1 GO:1902289 negative regulation of defense response to oomycetes(GO:1902289)
0.0 0.3 GO:0016233 telomere capping(GO:0016233)
0.0 0.2 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.0 0.2 GO:0009268 response to pH(GO:0009268)
0.0 0.3 GO:0010337 regulation of salicylic acid metabolic process(GO:0010337)
0.0 0.3 GO:0034471 rRNA 5'-end processing(GO:0000967) ncRNA 5'-end processing(GO:0034471)
0.0 0.3 GO:0080113 regulation of seed growth(GO:0080113)
0.0 0.8 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.0 1.3 GO:0043622 cortical microtubule organization(GO:0043622)
0.0 0.4 GO:0010262 somatic embryogenesis(GO:0010262)
0.0 1.1 GO:0010584 pollen exine formation(GO:0010584)
0.0 0.5 GO:0006574 valine catabolic process(GO:0006574)
0.0 0.3 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.1 GO:0043953 protein transport by the Tat complex(GO:0043953)
0.0 0.3 GO:0010190 cytochrome b6f complex assembly(GO:0010190)
0.0 0.5 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.4 GO:0009750 response to fructose(GO:0009750)
0.0 0.2 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.5 GO:2000032 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.0 0.6 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.9 GO:0010193 response to ozone(GO:0010193)
0.0 0.2 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.0 0.1 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.0 0.3 GO:0045723 positive regulation of fatty acid biosynthetic process(GO:0045723)
0.0 0.4 GO:0009697 salicylic acid biosynthetic process(GO:0009697)
0.0 0.2 GO:0071168 establishment of mitotic sister chromatid cohesion(GO:0034087) establishment of protein localization to chromosome(GO:0070199) rDNA condensation(GO:0070550) protein localization to chromatin(GO:0071168) establishment of protein localization to chromatin(GO:0071169) transcriptional activation by promoter-enhancer looping(GO:0071733) gene looping(GO:0090202) dsDNA loop formation(GO:0090579)
0.0 0.1 GO:0018871 1-aminocyclopropane-1-carboxylate metabolic process(GO:0018871) 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.0 0.3 GO:2000142 negative regulation of protein complex assembly(GO:0031333) regulation of DNA-templated transcription, initiation(GO:2000142)
0.0 0.2 GO:0046717 acid secretion(GO:0046717)
0.0 0.3 GO:0009423 chorismate biosynthetic process(GO:0009423)
0.0 0.1 GO:0048451 petal formation(GO:0048451)
0.0 0.5 GO:0006949 syncytium formation(GO:0006949)
0.0 0.1 GO:0006103 2-oxoglutarate metabolic process(GO:0006103)
0.0 0.2 GO:0010189 vitamin E biosynthetic process(GO:0010189) vitamin E metabolic process(GO:0042360)
0.0 0.2 GO:0010440 stomatal lineage progression(GO:0010440)
0.0 0.6 GO:0071472 cellular response to salt stress(GO:0071472)
0.0 0.1 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891) toxin transport(GO:1901998)
0.0 1.1 GO:0010043 response to zinc ion(GO:0010043)
0.0 0.1 GO:0009806 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.0 0.3 GO:0030307 positive regulation of cell growth(GO:0030307)
0.0 0.7 GO:0050826 response to freezing(GO:0050826)
0.0 0.4 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.3 GO:0046654 tetrahydrofolate biosynthetic process(GO:0046654)
0.0 0.2 GO:0080027 response to herbivore(GO:0080027)
0.0 0.2 GO:0051596 lactate metabolic process(GO:0006089) methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) ketone catabolic process(GO:0042182) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727)
0.0 0.4 GO:0031048 chromatin silencing by small RNA(GO:0031048)
0.0 0.1 GO:0090059 protoxylem development(GO:0090059)
0.0 0.2 GO:0006821 chloride transport(GO:0006821)
0.0 0.3 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.0 0.4 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636) unsaturated fatty acid metabolic process(GO:0033559)
0.0 0.4 GO:2000033 regulation of seed dormancy process(GO:2000033)
0.0 0.3 GO:0015833 oligopeptide transport(GO:0006857) peptide transport(GO:0015833)
0.0 0.1 GO:0032957 inositol trisphosphate metabolic process(GO:0032957)
0.0 0.1 GO:0000187 activation of MAPK activity(GO:0000187) positive regulation of MAP kinase activity(GO:0043406)
0.0 0.1 GO:0071277 cellular response to calcium ion(GO:0071277)
0.0 0.1 GO:1990428 miRNA transport(GO:1990428)
0.0 0.2 GO:0009089 lysine biosynthetic process via diaminopimelate(GO:0009089) diaminopimelate metabolic process(GO:0046451)
0.0 0.3 GO:0046653 tetrahydrofolate metabolic process(GO:0046653)
0.0 0.1 GO:0055069 zinc ion homeostasis(GO:0055069)
0.0 0.3 GO:0009685 gibberellin metabolic process(GO:0009685) gibberellin biosynthetic process(GO:0009686)
0.0 0.2 GO:0080086 stamen filament development(GO:0080086)
0.0 2.1 GO:0010200 response to chitin(GO:0010200)
0.0 0.4 GO:0009612 response to mechanical stimulus(GO:0009612)
0.0 0.2 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.1 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.0 0.6 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 0.4 GO:0006284 base-excision repair(GO:0006284)
0.0 1.0 GO:0007018 microtubule-based movement(GO:0007018)
0.0 0.2 GO:0010158 abaxial cell fate specification(GO:0010158)
0.0 0.2 GO:1905177 tracheary element differentiation(GO:1905177)
0.0 0.1 GO:0042219 glutathione catabolic process(GO:0006751) cellular modified amino acid catabolic process(GO:0042219)
0.0 0.6 GO:0009911 positive regulation of flower development(GO:0009911)
0.0 0.2 GO:2000377 regulation of reactive oxygen species metabolic process(GO:2000377)
0.0 0.2 GO:0006465 signal peptide processing(GO:0006465)
0.0 0.3 GO:0042044 water transport(GO:0006833) fluid transport(GO:0042044)
0.0 0.1 GO:0072659 protein localization to plasma membrane(GO:0072659) protein localization to cell periphery(GO:1990778)
0.0 0.2 GO:0015918 sterol transport(GO:0015918)
0.0 0.1 GO:0015850 organic hydroxy compound transport(GO:0015850)
0.0 0.3 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.0 0.2 GO:0050779 RNA destabilization(GO:0050779) mRNA destabilization(GO:0061157)
0.0 0.3 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 0.0 GO:0046865 isoprenoid transport(GO:0046864) terpenoid transport(GO:0046865)
0.0 0.4 GO:0042147 retrograde transport, endosome to Golgi(GO:0042147)
0.0 0.2 GO:0019915 lipid storage(GO:0019915)
0.0 0.1 GO:0010023 proanthocyanidin biosynthetic process(GO:0010023)
0.0 0.1 GO:0008295 spermidine biosynthetic process(GO:0008295)
0.0 0.3 GO:0006383 transcription from RNA polymerase III promoter(GO:0006383)
0.0 0.0 GO:1900369 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.0 0.2 GO:0034314 Arp2/3 complex-mediated actin nucleation(GO:0034314)
0.0 0.1 GO:0015937 coenzyme A biosynthetic process(GO:0015937)
0.0 0.1 GO:0071423 malate transmembrane transport(GO:0071423)
0.0 0.1 GO:0043967 histone H4 acetylation(GO:0043967)
0.0 0.1 GO:0018202 peptidyl-diphthamide metabolic process(GO:0017182) peptidyl-diphthamide biosynthetic process from peptidyl-histidine(GO:0017183) peptidyl-histidine modification(GO:0018202)
0.0 0.1 GO:0036297 interstrand cross-link repair(GO:0036297)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.6 GO:0043673 pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674)
0.1 0.7 GO:0005960 glycine cleavage complex(GO:0005960)
0.1 0.4 GO:0005652 nuclear lamina(GO:0005652)
0.1 0.5 GO:0000153 cytoplasmic ubiquitin ligase complex(GO:0000153)
0.1 0.4 GO:0000938 GARP complex(GO:0000938)
0.1 0.2 GO:0009514 glyoxysome(GO:0009514)
0.1 0.8 GO:0010005 cortical microtubule, transverse to long axis(GO:0010005)
0.1 1.1 GO:0072686 mitotic spindle(GO:0072686)
0.1 0.7 GO:1902562 NuA4 histone acetyltransferase complex(GO:0035267) H4/H2A histone acetyltransferase complex(GO:0043189) H4 histone acetyltransferase complex(GO:1902562)
0.1 1.1 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.1 0.2 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.1 0.2 GO:0000110 nucleotide-excision repair factor 1 complex(GO:0000110)
0.0 0.5 GO:0000127 transcription factor TFIIIC complex(GO:0000127)
0.0 0.5 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.0 0.2 GO:0042765 GPI-anchor transamidase complex(GO:0042765)
0.0 0.3 GO:0009538 photosystem I reaction center(GO:0009538)
0.0 0.8 GO:0005871 kinesin complex(GO:0005871)
0.0 0.1 GO:0032044 DSIF complex(GO:0032044)
0.0 0.3 GO:0048226 Casparian strip(GO:0048226)
0.0 0.1 GO:0033281 TAT protein transport complex(GO:0033281)
0.0 0.5 GO:0034399 nuclear periphery(GO:0034399)
0.0 0.2 GO:0030062 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.0 0.2 GO:0005776 autophagosome(GO:0005776)
0.0 0.1 GO:0044545 NSL complex(GO:0044545)
0.0 0.0 GO:0034457 Mpp10 complex(GO:0034457)
0.0 0.2 GO:0009503 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.0 0.3 GO:0019897 extrinsic component of plasma membrane(GO:0019897)
0.0 0.4 GO:0009986 cell surface(GO:0009986)
0.0 2.1 GO:0009705 plant-type vacuole membrane(GO:0009705)
0.0 0.2 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.2 GO:0048471 perinuclear region of cytoplasm(GO:0048471)
0.0 0.2 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.1 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.0 0.1 GO:0030127 COPII vesicle coat(GO:0030127)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 2.6 GO:0008732 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.4 1.2 GO:0004476 mannose-6-phosphate isomerase activity(GO:0004476)
0.2 0.7 GO:0016642 glycine dehydrogenase (decarboxylating) activity(GO:0004375) oxidoreductase activity, acting on the CH-NH2 group of donors, disulfide as acceptor(GO:0016642)
0.2 0.8 GO:0009973 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.2 0.9 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.2 1.5 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.2 1.4 GO:0080046 quercetin 4'-O-glucosyltransferase activity(GO:0080046)
0.2 0.5 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.2 0.5 GO:0071771 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.1 0.7 GO:0005355 glucose transmembrane transporter activity(GO:0005355)
0.1 1.3 GO:0008379 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.1 0.9 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.1 0.7 GO:0005274 allantoin uptake transmembrane transporter activity(GO:0005274) uracil:cation symporter activity(GO:0015505) uptake transmembrane transporter activity(GO:0015563)
0.1 1.5 GO:0047631 ADP-ribose diphosphatase activity(GO:0047631)
0.1 0.7 GO:0080109 indole-3-acetonitrile nitrile hydratase activity(GO:0080109)
0.1 0.9 GO:0004383 guanylate cyclase activity(GO:0004383)
0.1 0.3 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.1 1.3 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.1 0.3 GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity(GO:0003849)
0.1 0.7 GO:0010178 IAA-amino acid conjugate hydrolase activity(GO:0010178)
0.1 0.4 GO:0010285 L,L-diaminopimelate aminotransferase activity(GO:0010285)
0.1 0.4 GO:0004075 biotin carboxylase activity(GO:0004075)
0.1 1.1 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.1 0.7 GO:0052634 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.1 0.3 GO:0004150 dihydroneopterin aldolase activity(GO:0004150)
0.1 0.2 GO:0019788 NEDD8 transferase activity(GO:0019788)
0.1 0.2 GO:0010354 homogentisate prenyltransferase activity(GO:0010354)
0.1 0.2 GO:0004807 triose-phosphate isomerase activity(GO:0004807)
0.1 0.2 GO:0045430 chalcone isomerase activity(GO:0045430)
0.1 0.6 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.1 0.4 GO:0004127 cytidylate kinase activity(GO:0004127)
0.1 0.2 GO:0003995 acyl-CoA dehydrogenase activity(GO:0003995)
0.1 0.9 GO:0015145 monosaccharide transmembrane transporter activity(GO:0015145)
0.1 0.8 GO:0031127 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.1 0.7 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.1 0.2 GO:0052743 inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743)
0.1 0.3 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.1 0.2 GO:0052578 alpha-farnesene synthase activity(GO:0052578)
0.1 0.5 GO:0003988 acetyl-CoA C-acyltransferase activity(GO:0003988)
0.1 0.2 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.1 0.3 GO:0008430 selenium binding(GO:0008430)
0.1 0.3 GO:0015203 polyamine transmembrane transporter activity(GO:0015203)
0.1 1.3 GO:0010427 abscisic acid binding(GO:0010427)
0.1 0.2 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.1 0.5 GO:0003860 3-hydroxyisobutyryl-CoA hydrolase activity(GO:0003860)
0.1 0.2 GO:0071614 linoleic acid epoxygenase activity(GO:0071614)
0.0 0.7 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.0 0.3 GO:0045431 flavonol synthase activity(GO:0045431)
0.0 0.8 GO:0015250 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.0 0.4 GO:0016647 oxidoreductase activity, acting on the CH-NH group of donors, oxygen as acceptor(GO:0016647)
0.0 0.4 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.6 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.8 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.4 GO:0051747 cytosine C-5 DNA demethylase activity(GO:0051747)
0.0 0.2 GO:0015369 calcium:proton antiporter activity(GO:0015369)
0.0 0.3 GO:0031177 phosphopantetheine binding(GO:0031177)
0.0 0.5 GO:0046556 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.0 0.1 GO:0047150 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.0 0.2 GO:0004000 adenosine deaminase activity(GO:0004000) tRNA-specific adenosine deaminase activity(GO:0008251)
0.0 0.1 GO:0010334 sesquiterpene synthase activity(GO:0010334)
0.0 0.2 GO:0016629 12-oxophytodienoate reductase activity(GO:0016629)
0.0 0.4 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.5 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.0 0.2 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.0 0.1 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.0 0.6 GO:0010333 terpene synthase activity(GO:0010333)
0.0 0.3 GO:0016872 intramolecular lyase activity(GO:0016872)
0.0 0.5 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.2 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.0 0.1 GO:0015434 cadmium-transporting ATPase activity(GO:0015434) zinc-exporting ATPase activity(GO:0016463)
0.0 0.3 GO:0098847 single-stranded telomeric DNA binding(GO:0043047) sequence-specific single stranded DNA binding(GO:0098847)
0.0 0.1 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.0 0.1 GO:0004594 pantothenate kinase activity(GO:0004594)
0.0 0.2 GO:0004416 hydroxyacylglutathione hydrolase activity(GO:0004416)
0.0 0.1 GO:0008297 single-stranded DNA exodeoxyribonuclease activity(GO:0008297)
0.0 0.2 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.3 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.1 GO:0000062 fatty-acyl-CoA binding(GO:0000062)
0.0 0.3 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.0 0.3 GO:0033613 activating transcription factor binding(GO:0033613)
0.0 0.6 GO:0004176 ATP-dependent peptidase activity(GO:0004176)
0.0 0.3 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.0 0.2 GO:0004031 aldehyde oxidase activity(GO:0004031)
0.0 0.7 GO:0004089 carbonate dehydratase activity(GO:0004089)
0.0 0.7 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.0 0.2 GO:0047617 acyl-CoA hydrolase activity(GO:0047617)
0.0 0.4 GO:0003746 translation elongation factor activity(GO:0003746)
0.0 0.2 GO:0003886 DNA (cytosine-5-)-methyltransferase activity(GO:0003886)
0.0 0.4 GO:0102338 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.0 0.1 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 0.2 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.0 0.2 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.0 0.6 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.1 GO:0010280 UDP-L-rhamnose synthase activity(GO:0010280) UDP-glucose 4,6-dehydratase activity(GO:0050377)
0.0 0.1 GO:0005365 myo-inositol transmembrane transporter activity(GO:0005365) polyol transmembrane transporter activity(GO:0015166)
0.0 0.4 GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702)
0.0 0.1 GO:0017108 5'-flap endonuclease activity(GO:0017108)
0.0 0.1 GO:0008493 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.0 2.1 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 0.2 GO:0016783 sulfurtransferase activity(GO:0016783)
0.0 0.5 GO:0016597 amino acid binding(GO:0016597)
0.0 0.1 GO:0000254 C-4 methylsterol oxidase activity(GO:0000254)
0.0 0.2 GO:0008574 ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574)
0.0 0.2 GO:0004312 fatty acid synthase activity(GO:0004312)
0.0 0.2 GO:0005504 fatty acid binding(GO:0005504)
0.0 0.1 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 0.1 GO:0004715 non-membrane spanning protein tyrosine kinase activity(GO:0004715)
0.0 0.1 GO:0004614 phosphoglucomutase activity(GO:0004614)
0.0 0.3 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.5 GO:0044390 ubiquitin-like protein conjugating enzyme binding(GO:0044390)
0.0 0.4 GO:0005179 hormone activity(GO:0005179)
0.0 0.9 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.3 GO:0017069 snRNA binding(GO:0017069)
0.0 0.2 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.1 GO:0016635 oxidoreductase activity, acting on the CH-CH group of donors, quinone or related compound as acceptor(GO:0016635)
0.0 0.0 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.0 0.3 GO:0032934 sterol binding(GO:0032934)
0.0 0.3 GO:0030570 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.2 GO:0080019 fatty-acyl-CoA reductase (alcohol-forming) activity(GO:0080019)
0.0 0.1 GO:0016812 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides(GO:0016812)
0.0 0.4 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.5 GO:0008171 O-methyltransferase activity(GO:0008171)
0.0 0.7 GO:0003777 microtubule motor activity(GO:0003777)
0.0 0.1 GO:0070042 rRNA (uridine) methyltransferase activity(GO:0016436) rRNA (uridine-N3-)-methyltransferase activity(GO:0070042)
0.0 0.1 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.1 GO:0017169 CDP-alcohol phosphatidyltransferase activity(GO:0017169)
0.0 0.1 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.1 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 0.6 GO:0051213 dioxygenase activity(GO:0051213)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 PID AURORA A PATHWAY Aurora A signaling
0.1 0.5 PID ATF2 PATHWAY ATF-2 transcription factor network
0.1 0.3 PID MYC REPRESS PATHWAY Validated targets of C-MYC transcriptional repression
0.1 0.2 PID HIV NEF PATHWAY HIV-1 Nef: Negative effector of Fas and TNF-alpha
0.1 0.3 PID BARD1 PATHWAY BARD1 signaling events
0.0 0.2 NABA ECM GLYCOPROTEINS Genes encoding structural ECM glycoproteins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME TRANSCRIPTIONAL ACTIVITY OF SMAD2 SMAD3 SMAD4 HETEROTRIMER Genes involved in Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer
0.1 0.4 REACTOME PEROXISOMAL LIPID METABOLISM Genes involved in Peroxisomal lipid metabolism
0.1 0.3 REACTOME MITOTIC PROMETAPHASE Genes involved in Mitotic Prometaphase
0.1 0.2 REACTOME NOD1 2 SIGNALING PATHWAY Genes involved in NOD1/2 Signaling Pathway
0.0 0.3 REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS Genes involved in Homologous recombination repair of replication-independent double-strand breaks
0.0 0.2 REACTOME FORMATION OF INCISION COMPLEX IN GG NER Genes involved in Formation of incision complex in GG-NER
0.0 0.2 REACTOME GLUCOSE METABOLISM Genes involved in Glucose metabolism
0.0 0.1 REACTOME BIOLOGICAL OXIDATIONS Genes involved in Biological oxidations
0.0 0.1 REACTOME BIOSYNTHESIS OF THE N GLYCAN PRECURSOR DOLICHOL LIPID LINKED OLIGOSACCHARIDE LLO AND TRANSFER TO A NASCENT PROTEIN Genes involved in Biosynthesis of the N-glycan precursor (dolichol lipid-linked oligosaccharide, LLO) and transfer to a nascent protein
0.0 0.1 REACTOME METABOLISM OF VITAMINS AND COFACTORS Genes involved in Metabolism of vitamins and cofactors
0.0 0.1 REACTOME G1 PHASE Genes involved in G1 Phase