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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G47640

Z-value: 0.23

Transcription factors associated with AT3G47640

Gene Symbol Gene ID Gene Info
AT3G47640
AT3G47640 basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
PYEarTal_v1_Chr3_+_17567126_175671260.525.6e-02Click!

Activity profile of AT3G47640 motif

Sorted Z-values of AT3G47640 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_17475274 0.53 AT3G47420.3
AT3G47420.1
AT3G47420.2
G3Pp1
putative glycerol-3-phosphate transporter 1
Chr5_-_8358546 0.39 AT5G24470.1
PRR5
two-component response regulator-like protein
Chr1_-_28094915 0.25 AT1G74770.2
AT1G74770.1
AT1G74770
zinc ion binding protein
Chr3_+_17569424 0.19 AT3G47650.1
AT3G47650
DnaJ/Hsp40 cysteine-rich domain superfamily protein
Chr1_+_21136835 0.18 AT1G56430.1
NAS4
nicotianamine synthase 4
Chr1_+_21043348 0.18 AT1G56220.2
AT1G56220.1
AT1G56220
Dormancy/auxin associated family protein
Chr1_+_21042951 0.17 AT1G56220.4
AT1G56220.5
AT1G56220.3
AT1G56220
Dormancy/auxin associated family protein
Chr2_+_12847518 0.14 AT2G30100.1
AT2G30100
pentatricopeptide (PPR) repeat-containing protein
Chr2_-_19281772 0.14 AT2G46920.4
AT2G46920.3
AT2G46920.2
AT2G46920.1
POL
Protein phosphatase 2C family protein
Chr3_+_21123859 0.13 AT3G57070.1
AT3G57070
Glutaredoxin family protein
Chr5_+_18407388 0.13 AT5G45430.1
AT5G45430
Protein kinase superfamily protein
Chr5_-_4842067 0.12 AT5G14950.1
GMII
golgi alpha-mannosidase II
Chr5_+_18407150 0.12 AT5G45430.2
AT5G45430
Protein kinase superfamily protein
Chr5_-_4430901 0.11 AT5G13730.1
SIG4
sigma factor 4
Chr3_+_21125725 0.10 AT3G57080.1
NRPE5
Eukaryotic rpb5 RNA polymerase subunit family protein
Chr3_+_17480521 0.10 AT3G47430.1
PEX11B
peroxin 11B
Chr3_-_5119060 0.09 AT3G15200.1
AT3G15200
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_7621477 0.09 AT3G21640.1
TWD1
FKBP-type peptidyl-prolyl cis-trans isomerase family protein
Chr3_-_7624114 0.09 AT3G21650.2
AT3G21650.1
AT3G21650
Protein phosphatase 2A regulatory B subunit family protein
Chr2_-_14260739 0.09 AT2G33710.2
AT2G33710
Integrase-type DNA-binding superfamily protein
Chr5_-_740319 0.09 AT5G03140.1
AT5G03140
Concanavalin A-like lectin protein kinase family protein
Chr1_-_738234 0.08 AT1G03080.2
AT1G03080.1
NET1D
kinase interacting (KIP1-like) family protein
Chr3_-_21121051 0.08 AT3G57060.1
AT3G57060.2
AT3G57060.3
AT3G57060
binding protein
Chr2_-_14260904 0.08 AT2G33710.1
AT2G33710
Integrase-type DNA-binding superfamily protein
Chr1_+_28095729 0.08 AT1G74780.1
AT1G74780
Nodulin-like / Major Facilitator Superfamily protein
Chr5_+_4432297 0.07 AT5G13740.2
AT5G13740.1
ZIF1
zinc induced facilitator 1
Chr3_-_4493737 0.07 AT3G13700.2
AT3G13700.1
AT3G13710.1
AT3G13700
PRA1.F4
RNA-binding (RRM/RBD/RNP motifs) family protein
prenylated RAB acceptor 1.F4
Chr1_-_27273935 0.07 AT1G72440.1
EDA25
CCAAT-binding factor
Chr2_+_10431260 0.06 AT2G24560.1
AT2G24560
GDSL-like Lipase/Acylhydrolase family protein
Chr1_+_3995393 0.05 AT1G11840.6
AT1G11840.3
AT1G11840.4
GLX1
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
Chr1_+_3995158 0.05 AT1G11840.2
AT1G11840.1
AT1G11840.5
GLX1
glyoxalase/bleomycin resistance protein/dioxygenase superfamily protein
Chr3_+_20553403 0.05 AT3G55440.1
TPI
triosephosphate isomerase
Chr4_+_17400610 0.05 AT4G36920.2
AT4G36920.1
AP2
Integrase-type DNA-binding superfamily protein
Chr1_-_738056 0.05 AT1G03080.3
NET1D
kinase interacting (KIP1-like) family protein
Chr2_+_10431412 0.05 AT2G24560.2
AT2G24560
GDSL-like Lipase/Acylhydrolase family protein
Chr1_+_28098464 0.04 AT1G74790.1
AT1G74790
catalytics
Chr4_+_749307 0.04 AT4G01730.1
AT4G01730
DHHC-type zinc finger family protein
Chr3_-_17565496 0.02 AT3G47630.1
AT3G47630.4
AT3G47630.5
AT3G47630.3
AT3G47630.2
AT3G47630.6
AT3G47630
translocator assembly/maintenance protein
Chr5_-_763480 0.02 AT5G03210.2
DIP2
E3 ubiquitin-protein ligase
Chr5_-_763322 0.02 AT5G03210.1
DIP2
E3 ubiquitin-protein ligase

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G47640

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0030418 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.0 0.5 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.0 0.1 GO:0006517 protein deglycosylation(GO:0006517)
0.0 0.1 GO:0046166 glyceraldehyde-3-phosphate biosynthetic process(GO:0046166)
0.0 0.1 GO:0010032 meiotic chromosome condensation(GO:0010032)
0.0 0.1 GO:1900458 negative regulation of brassinosteroid mediated signaling pathway(GO:1900458)
0.0 0.1 GO:0019243 lactate metabolic process(GO:0006089) methylglyoxal metabolic process(GO:0009438) methylglyoxal catabolic process to D-lactate via S-lactoyl-glutathione(GO:0019243) ketone catabolic process(GO:0042182) methylglyoxal catabolic process(GO:0051596) methylglyoxal catabolic process to lactate(GO:0061727)
0.0 0.1 GO:0044375 regulation of peroxisome size(GO:0044375)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 GO:0000796 condensin complex(GO:0000796)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.2 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.0 0.1 GO:0004462 lactoylglutathione lyase activity(GO:0004462)
0.0 0.1 GO:0015924 mannosyl-oligosaccharide mannosidase activity(GO:0015924)
0.0 0.1 GO:0004807 triose-phosphate isomerase activity(GO:0004807)
0.0 0.1 GO:0000996 core DNA-dependent RNA polymerase binding promoter specificity activity(GO:0000996) sigma factor activity(GO:0016987)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 PID MTOR 4PATHWAY mTOR signaling pathway