GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT3G42860
|
AT3G42860 | zinc knuckle (CCHC-type) family protein |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
AT3G42860 | arTal_v1_Chr3_-_14948228_14948228 | 0.38 | 1.9e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr4_-_14827211_14827211 Show fit | 1.52 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
arTal_v1_Chr4_+_6826587_6826587 Show fit | 1.39 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
arTal_v1_Chr5_+_21603569_21603569 Show fit | 1.16 |
AT5G53250.1
|
arabinogalactan protein 22 |
|
arTal_v1_Chr3_-_8450799_8450799 Show fit | 1.10 |
AT3G23550.1
|
MATE efflux family protein |
|
arTal_v1_Chr5_+_26894778_26894778 Show fit | 1.08 |
AT5G67400.1
|
root hair specific 19 |
|
arTal_v1_Chr1_+_20462940_20462940 Show fit | 1.07 |
AT1G54890.1
|
Late embryogenesis abundant (LEA) protein-like protein |
|
arTal_v1_Chr3_+_9480746_9480839 Show fit | 1.07 |
AT3G25900.1
AT3G25900.3 AT3G25900.2 |
Homocysteine S-methyltransferase family protein |
|
arTal_v1_Chr5_+_19428888_19428888 Show fit | 1.04 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
arTal_v1_Chr3_-_17008528_17008528 Show fit | 0.98 |
AT3G46280.1
|
kinase-like protein |
|
arTal_v1_Chr2_-_12277417_12277417 Show fit | 0.92 |
AT2G28630.2
|
3-ketoacyl-CoA synthase 12 |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.1 | GO:0010200 | response to chitin(GO:0010200) |
0.0 | 2.1 | GO:0002239 | response to oomycetes(GO:0002239) |
0.0 | 2.0 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
0.0 | 1.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
0.0 | 1.8 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
0.0 | 1.7 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
0.3 | 1.5 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
0.0 | 1.4 | GO:0080167 | response to karrikin(GO:0080167) |
0.1 | 1.3 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
0.1 | 1.3 | GO:1900426 | positive regulation of defense response to bacterium(GO:1900426) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.6 | GO:0009505 | plant-type cell wall(GO:0009505) |
0.0 | 3.1 | GO:0048046 | apoplast(GO:0048046) |
0.0 | 1.1 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
0.0 | 0.9 | GO:0031012 | extracellular matrix(GO:0031012) |
0.0 | 0.8 | GO:0090406 | pollen tube(GO:0090406) |
0.1 | 0.6 | GO:0070062 | extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561) |
0.0 | 0.6 | GO:0010005 | cortical microtubule, transverse to long axis(GO:0010005) |
0.0 | 0.6 | GO:0000145 | exocyst(GO:0000145) |
0.0 | 0.6 | GO:0009504 | cell plate(GO:0009504) |
0.1 | 0.4 | GO:0043668 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 2.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
0.1 | 2.1 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
0.0 | 2.1 | GO:0004601 | peroxidase activity(GO:0004601) |
0.1 | 1.6 | GO:0004568 | chitinase activity(GO:0004568) |
0.3 | 1.5 | GO:0042085 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
0.2 | 1.5 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
0.0 | 1.5 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.0 | 1.4 | GO:0005385 | zinc ion transmembrane transporter activity(GO:0005385) |
0.0 | 1.4 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
0.0 | 1.3 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.2 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
0.0 | 0.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.3 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
0.1 | 0.3 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
0.0 | 0.3 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 0.2 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
0.0 | 0.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.0 | 0.1 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
0.0 | 0.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |
0.0 | 0.1 | REACTOME CITRIC ACID CYCLE TCA CYCLE | Genes involved in Citric acid cycle (TCA cycle) |
0.0 | 0.1 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |