GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT3G30210
|
AT3G30210 | myb domain protein 121 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MYB121 | arTal_v1_Chr3_+_11838363_11838363 | -0.08 | 7.8e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr1_-_10164452_10164452 Show fit | 1.85 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
arTal_v1_Chr2_+_12004658_12004700 Show fit | 1.57 |
AT2G28160.1
AT2G28160.2 |
FER-like regulator of iron uptake |
|
arTal_v1_Chr4_+_8646150_8646150 Show fit | 1.46 |
AT4G15160.2
AT4G15160.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
arTal_v1_Chr3_-_20203919_20203919 Show fit | 1.23 |
AT3G54580.1
|
Proline-rich extensin-like family protein |
|
arTal_v1_Chr5_-_5692920_5692992 Show fit | 1.23 |
AT5G17300.2
AT5G17300.1 |
Homeodomain-like superfamily protein |
|
arTal_v1_Chr2_+_13987669_13987669 Show fit | 1.15 |
AT2G32960.1
|
Phosphotyrosine protein phosphatases superfamily protein |
|
arTal_v1_Chr3_+_5585872_5585944 Show fit | 1.15 |
AT3G16440.2
AT3G16440.1 |
myrosinase-binding protein-like protein-300B |
|
arTal_v1_Chr5_+_4370692_4370692 Show fit | 1.11 |
AT5G13580.1
|
ABC-2 type transporter family protein |
|
arTal_v1_Chr4_-_14542565_14542565 Show fit | 1.10 |
AT4G29690.1
|
Alkaline-phosphatase-like family protein |
|
arTal_v1_Chr3_-_10704010_10704018 Show fit | 1.09 |
AT3G28550.1
AT3G28550.2 |
Proline-rich extensin-like family protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.0 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
0.0 | 1.9 | GO:0006470 | protein dephosphorylation(GO:0006470) |
0.0 | 1.4 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
0.0 | 1.4 | GO:0009808 | lignin metabolic process(GO:0009808) |
0.2 | 1.2 | GO:0016045 | detection of bacterium(GO:0016045) |
0.1 | 1.2 | GO:0010600 | regulation of auxin biosynthetic process(GO:0010600) |
0.1 | 1.0 | GO:0010192 | mucilage biosynthetic process(GO:0010192) |
0.0 | 1.0 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
0.0 | 1.0 | GO:0002181 | cytoplasmic translation(GO:0002181) |
0.2 | 0.9 | GO:0071366 | cellular response to indolebutyric acid stimulus(GO:0071366) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.9 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
0.0 | 1.4 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 1.3 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 0.9 | GO:0045298 | tubulin complex(GO:0045298) |
0.0 | 0.9 | GO:0005746 | mitochondrial respiratory chain(GO:0005746) |
0.2 | 0.8 | GO:0010316 | pyrophosphate-dependent phosphofructokinase complex(GO:0010316) |
0.1 | 0.8 | GO:0005784 | Sec61 translocon complex(GO:0005784) |
0.1 | 0.8 | GO:0005832 | chaperonin-containing T-complex(GO:0005832) |
0.0 | 0.8 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
0.1 | 0.7 | GO:0035861 | site of double-strand break(GO:0035861) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 1.9 | GO:0004724 | magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724) |
0.0 | 1.7 | GO:0042910 | xenobiotic transporter activity(GO:0042910) |
0.3 | 1.4 | GO:0050734 | hydroxycinnamoyltransferase activity(GO:0050734) |
0.2 | 1.3 | GO:0045431 | flavonol synthase activity(GO:0045431) |
0.0 | 1.3 | GO:0043022 | ribosome binding(GO:0043022) |
0.0 | 1.3 | GO:0004185 | serine-type carboxypeptidase activity(GO:0004185) |
0.0 | 1.2 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
0.0 | 1.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
0.3 | 1.1 | GO:0036218 | dTTP diphosphatase activity(GO:0036218) |
0.0 | 1.1 | GO:0016682 | oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.1 | 0.2 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
0.0 | 0.2 | PID BETA CATENIN NUC PATHWAY | Regulation of nuclear beta catenin signaling and target gene transcription |
0.0 | 0.2 | PID PLK1 PATHWAY | PLK1 signaling events |
0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
0.0 | 0.1 | PID ATM PATHWAY | ATM pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
0.1 | 0.4 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
0.1 | 0.2 | REACTOME CYCLIN E ASSOCIATED EVENTS DURING G1 S TRANSITION | Genes involved in Cyclin E associated events during G1/S transition |
0.0 | 0.2 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.0 | 0.2 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.0 | 0.1 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |