GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT3G27920
|
AT3G27920 | myb domain protein 0 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MYB0 | arTal_v1_Chr3_-_10363607_10363607 | -0.10 | 7.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr5_+_9200271_9200271 Show fit | 1.59 |
AT5G26260.1
|
TRAF-like family protein |
|
arTal_v1_Chr1_-_9956960_9956980 Show fit | 1.35 |
AT1G28370.1
AT1G28370.2 |
ERF domain protein 11 |
|
arTal_v1_Chr1_-_19385533_19385602 Show fit | 1.30 |
AT1G52100.1
AT1G52100.3 AT1G52100.4 AT1G52100.2 AT1G52100.5 |
Mannose-binding lectin superfamily protein |
|
arTal_v1_Chr1_-_25580194_25580199 Show fit | 1.18 |
AT1G68250.2
AT1G68250.1 |
hypothetical protein |
|
arTal_v1_Chr1_-_12897675_12897675 Show fit | 1.05 |
AT1G35210.1
|
hypothetical protein |
|
arTal_v1_Chr3_-_18375940_18375940 Show fit | 0.86 |
AT3G49580.1
|
response to low sulfur 1 |
|
arTal_v1_Chr3_-_18375784_18375784 Show fit | 0.83 |
AT3G49580.3
AT3G49580.2 |
response to low sulfur 1 |
|
arTal_v1_Chr5_+_9656949_9657000 Show fit | 0.82 |
AT5G27360.3
AT5G27360.2 AT5G27360.1 AT5G27360.4 |
Major facilitator superfamily protein |
|
arTal_v1_Chr3_+_18210453_18210453 Show fit | 0.78 |
AT3G49130.1
|
SWAP (Suppressor-of-White-APricot)/surp RNA-binding domain-containing protein |
|
arTal_v1_Chr4_-_524249_524249 Show fit | 0.73 |
AT4G01250.1
|
WRKY family transcription factor |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 1.7 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
0.2 | 1.6 | GO:0050691 | regulation of defense response to virus by host(GO:0050691) |
0.0 | 1.3 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
0.0 | 1.0 | GO:0010224 | response to UV-B(GO:0010224) |
0.0 | 0.7 | GO:0009861 | jasmonic acid and ethylene-dependent systemic resistance(GO:0009861) |
0.2 | 0.6 | GO:0042759 | long-chain fatty acid biosynthetic process(GO:0042759) |
0.1 | 0.6 | GO:0090116 | C-5 methylation of cytosine(GO:0090116) |
0.0 | 0.6 | GO:0009407 | toxin catabolic process(GO:0009407) secondary metabolite catabolic process(GO:0090487) |
0.1 | 0.5 | GO:0060866 | leaf abscission(GO:0060866) |
0.0 | 0.5 | GO:0010264 | myo-inositol hexakisphosphate biosynthetic process(GO:0010264) myo-inositol hexakisphosphate metabolic process(GO:0033517) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.3 | GO:0005686 | U2 snRNP(GO:0005686) |
0.0 | 0.3 | GO:0098807 | chloroplast thylakoid membrane protein complex(GO:0098807) |
0.0 | 0.3 | GO:0000159 | protein phosphatase type 2A complex(GO:0000159) |
0.0 | 0.2 | GO:0005776 | autophagosome(GO:0005776) |
0.0 | 0.2 | GO:0000176 | nuclear exosome (RNase complex)(GO:0000176) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.6 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
0.1 | 0.6 | GO:0003886 | DNA (cytosine-5-)-methyltransferase activity(GO:0003886) |
0.2 | 0.5 | GO:0008909 | isochorismate synthase activity(GO:0008909) |
0.1 | 0.5 | GO:0004049 | anthranilate synthase activity(GO:0004049) |
0.1 | 0.4 | GO:0050062 | long-chain-fatty-acyl-CoA reductase activity(GO:0050062) |
0.0 | 0.3 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
0.0 | 0.3 | GO:0004362 | glutathione-disulfide reductase activity(GO:0004362) |
0.0 | 0.3 | GO:0016702 | oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen(GO:0016702) |
0.0 | 0.3 | GO:0019903 | protein phosphatase binding(GO:0019903) |
0.1 | 0.2 | GO:0004475 | mannose-1-phosphate guanylyltransferase activity(GO:0004475) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 0.2 | PID MTOR 4PATHWAY | mTOR signaling pathway |
0.0 | 0.2 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
0.1 | 0.4 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
0.0 | 0.1 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |