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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G27010

Z-value: 0.84

Transcription factors associated with AT3G27010

Gene Symbol Gene ID Gene Info
AT3G27010
AT3G27010 TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TCP20arTal_v1_Chr3_-_9958921_9958945-0.156.0e-01Click!

Activity profile of AT3G27010 motif

Sorted Z-values of AT3G27010 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_18821889 1.23 AT2G45680.1
TCP9
TCP family transcription factor
Chr3_+_2441565 1.08 AT3G07650.4
AT3G07650.1
AT3G07650.3
AT3G07650.2
COL9
CONSTANS-like 9
Chr5_+_5205869 1.00 AT5G15950.1
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr5_+_5206156 0.97 AT5G15950.2
AT5G15950
Adenosylmethionine decarboxylase family protein
Chr1_+_209208 0.96 AT1G01580.1
FRO2
ferric reduction oxidase 2
Chr1_+_208995 0.96 AT1G01580.2
FRO2
ferric reduction oxidase 2
Chr1_-_3167924 0.80 AT1G09780.1
iPGAM1
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent
Chr3_-_7656053 0.73 AT3G21720.1
ICL
isocitrate lyase
Chr1_-_4882003 0.73 AT1G14290.2
SBH2
sphingoid base hydroxylase 2
Chr1_-_4882265 0.72 AT1G14290.1
SBH2
sphingoid base hydroxylase 2
Chr3_-_17910736 0.71 AT3G48360.3
AT3G48360.1
AT3G48360.2
BT2
BTB and TAZ domain protein 2
Chr3_-_4834015 0.71 AT3G14440.1
NCED3
nine-cis-epoxycarotenoid dioxygenase 3
Chr2_+_9488413 0.70 AT2G22330.2
AT2G22330.1
CYP79B3
cytochrome P450, family 79, subfamily B, polypeptide 3
Chr3_+_2378219 0.69 AT3G07425.1
AT3G07425
transmembrane protein
Chr5_+_25703649 0.67 AT5G64260.1
EXL2
EXORDIUM like 2
Chr5_-_9944942 0.62 AT5G27920.1
AT5G27920
F-box family protein
Chr1_+_10991478 0.62 AT1G30870.1
AT1G30870
Peroxidase superfamily protein
Chr1_+_4433605 0.61 AT1G12990.1
AT1G12990
beta-1,4-N-acetylglucosaminyltransferase family protein
Chr1_+_564018 0.60 AT1G02640.1
BXL2
beta-xylosidase 2
Chr2_+_18727504 0.60 AT2G45430.1
AHL22
AT-hook motif nuclear-localized protein 22
Chr4_-_18472048 0.60 AT4G39800.1
MIPS1
myo-inositol-1-phosphate synthase 1
Chr1_-_25870227 0.59 AT1G68825.1
RTFL15
ROTUNDIFOLIA like 15
Chr5_-_20940895 0.56 AT5G51550.1
EXL3
EXORDIUM like 3
Chr4_+_18525246 0.55 AT4G39950.1
CYP79B2
cytochrome P450, family 79, subfamily B, polypeptide 2
Chr1_-_6904155 0.55 AT1G19880.1
AT1G19880
Regulator of chromosome condensation (RCC1) family protein
Chr4_-_14439723 0.55 AT4G29310.1
AT4G29310.2
AT4G29310
DUF1005 family protein (DUF1005)
Chr2_+_9917443 0.55 AT2G23310.1
AT2G23310.2
ATRER1C1
Rer1 family protein
Chr4_+_18525042 0.55 AT4G39950.2
CYP79B2
cytochrome P450, family 79, subfamily B, polypeptide 2
Chr4_-_11965684 0.52 AT4G22770.2
AT4G22770.1
AT4G22770
AT hook motif DNA-binding family protein
Chr1_-_18360426 0.52 AT1G49600.2
AT1G49600.1
AT1G49600.3
RBP47A
RNA-binding protein 47A
Chr4_+_16091535 0.50 AT4G33440.1
AT4G33440
Pectin lyase-like superfamily protein
Chr5_+_4591690 0.50 AT5G14230.1
AT5G14230
ankyrin
Chr5_+_25268950 0.50 AT5G62960.1
AT5G62960.2
AT5G62960
UDP-N-acetylglucosamine-N-acetylmuramyl-pyrophosphoryl-undecaprenol N-acetylglucosamine protein
Chr3_+_5121303 0.49 AT3G15210.1
ERF4
ethylene responsive element binding factor 4
Chr5_-_22712441 0.49 AT5G56080.1
NAS2
nicotianamine synthase 2
Chr2_-_17202848 0.49 AT2G41250.1
AT2G41250
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr4_+_15599475 0.49 AT4G32300.1
SD2-5
S-domain-2 5
Chr3_-_4123582 0.48 AT3G12920.1
BRG3
SBP (S-ribonuclease binding protein) family protein
Chr5_-_7250770 0.48 AT5G21940.1
AT5G21940
hybrid signal transduction histidine kinase M-like protein
Chr1_-_20733997 0.48 AT1G55535.2
AT1G55535.1
AT1G55535.3
AT1G55535
transmembrane protein
Chr3_-_4042075 0.45 AT3G12710.1
AT3G12710
DNA glycosylase superfamily protein
Chr1_-_19250823 0.45 AT1G51840.1
AT1G51840.3
AT1G51840.4
AT1G51840.5
AT1G51840.2
AT1G51840
kinase-like protein
Chr5_+_4593198 0.44 AT5G14230.2
AT5G14230
ankyrin
Chr1_+_6688463 0.43 AT1G19350.4
AT1G19350.3
AT1G19350.5
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_+_2167468 0.43 AT5G06980.4
AT5G06980.3
AT5G06980.5
AT5G06980.2
AT5G06980
hypothetical protein
Chr5_+_7676662 0.42 AT5G22940.1
F8H
glucuronoxylan glucuronosyltransferase, putative
Chr3_+_5362888 0.42 AT3G15870.1
AT3G15870
Fatty acid desaturase family protein
Chr5_+_2167120 0.41 AT5G06980.1
AT5G06980
hypothetical protein
Chr4_-_14776247 0.41 AT4G30190.1
HA2
H[+]-ATPase 2
Chr5_+_7676938 0.41 AT5G22940.2
F8H
glucuronoxylan glucuronosyltransferase, putative
Chr1_-_25727701 0.41 AT1G68550.1
CRF10
Integrase-type DNA-binding superfamily protein
Chr5_+_22388782 0.41 AT5G55180.2
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr4_-_14776058 0.41 AT4G30190.2
HA2
H[+]-ATPase 2
Chr3_-_2137280 0.40 AT3G06770.4
AT3G06770.3
AT3G06770
Pectin lyase-like superfamily protein
Chr2_-_16846194 0.40 AT2G40330.1
PYL6
PYR1-like 6
Chr1_-_25727386 0.40 AT1G68550.2
CRF10
Integrase-type DNA-binding superfamily protein
Chr1_-_7267354 0.39 AT1G20890.2
AT1G20890.1
AT1G20890
caveolin-1 protein
Chr3_-_2137012 0.39 AT3G06770.1
AT3G06770.5
AT3G06770
Pectin lyase-like superfamily protein
Chr5_+_22388521 0.38 AT5G55180.1
AT5G55180
O-Glycosyl hydrolases family 17 protein
Chr1_+_8262925 0.38 AT1G23290.1
RPL27AB
Ribosomal protein L18e/L15 superfamily protein
Chr1_-_1143051 0.38 AT1G04270.2
AT1G04270.1
RPS15
cytosolic ribosomal protein S15
Chr4_+_15487914 0.38 AT4G32020.1
AT4G32020
serine/arginine repetitive matrix-like protein
Chr1_-_1157786 0.38 AT1G04310.2
AT1G04310.1
ERS2
ethylene response sensor 2
Chr4_-_13460105 0.38 AT4G26690.1
SHV3
PLC-like phosphodiesterase family protein
Chr1_+_8962087 0.37 AT1G25520.1
AT1G25520
Uncharacterized protein family (UPF0016)
Chr4_-_16806830 0.37 AT4G35320.1
AT4G35320
hypothetical protein
Chr3_-_21434648 0.37 AT3G57880.1
AT3G57880.3
AT3G57880.4
AT3G57880
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Chr2_+_19686333 0.36 AT2G48140.1
AT2G48140.2
EDA4
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_15801200 0.36 AT3G44010.2
AT3G44010.1
AT3G44010
Ribosomal protein S14p/S29e family protein
Chr4_+_17305758 0.36 AT4G36710.1
HAM4
GRAS family transcription factor
Chr3_-_21523375 0.36 AT3G58120.2
AT3G58120.1
BZIP61
Basic-leucine zipper (bZIP) transcription factor family protein
Chr1_+_16739192 0.36 AT1G44050.1
AT1G44050
Cysteine/Histidine-rich C1 domain family protein
Chr5_+_6192327 0.35 AT5G18610.2
AT5G18610.3
AT5G18610.1
AT5G18610
Protein kinase superfamily protein
Chr1_+_6688698 0.35 AT1G19350.1
AT1G19350.6
BES1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr2_+_14493571 0.35 AT2G34350.2
AT2G34350
Nodulin-like / Major Facilitator Superfamily protein
Chr5_+_3253122 0.35 AT5G10340.1
AT5G10340
F-box family protein
Chr5_+_3476820 0.34 AT5G10990.1
AT5G10990
SAUR-like auxin-responsive protein family
Chr3_-_538126 0.34 AT3G02550.1
LBD41
LOB domain-containing protein 41
Chr1_-_30142697 0.34 AT1G80130.1
AT1G80130
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr3_-_1268350 0.34 AT3G04670.2
AT3G04670.1
WRKY39
WRKY DNA-binding protein 39
Chr4_-_13019400 0.34 AT4G25480.1
DREB1A
dehydration response element B1A
Chr3_+_1591115 0.34 AT3G05490.1
RALFL22
ralf-like 22
Chr1_-_8429241 0.34 AT1G23860.2
AT1G23860.3
AT1G23860.1
AT1G23860.4
RSZ21
RS-containing zinc finger protein 21
Chr3_+_4510965 0.34 AT3G13750.1
BGAL1
beta galactosidase 1
Chr2_+_14493308 0.34 AT2G34350.1
AT2G34350
Nodulin-like / Major Facilitator Superfamily protein
Chr4_-_15017365 0.34 AT4G30830.1
AT4G30830
myosin-like protein (Protein of unknown function, DUF593)
Chr3_-_21433954 0.34 AT3G57880.2
AT3G57880
Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein
Chr1_+_6594883 0.33 AT1G19100.1
DMS11
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase family protein
Chr4_-_12254275 0.32 AT4G23490.1
AT4G23490
fringe-like protein (DUF604)
Chr5_+_7138762 0.32 AT5G21020.2
AT5G21020
transmembrane protein
Chr5_-_20016857 0.32 AT5G49360.1
BXL1
beta-xylosidase 1
Chr5_+_16370368 0.32 AT5G40860.2
AT5G40860.1
AT5G40860
transmembrane protein
Chr4_+_13675537 0.32 AT4G27310.1
BBX28
B-box type zinc finger family protein
Chr1_+_518091 0.32 AT1G02500.1
SAM1
S-adenosylmethionine synthetase 1
Chr1_+_518254 0.31 AT1G02500.2
SAM1
S-adenosylmethionine synthetase 1
Chr4_+_18324457 0.31 AT4G39400.1
BRI1
Leucine-rich receptor-like protein kinase family protein
Chr4_+_1579929 0.31 AT4G03560.1
TPC1
two-pore channel 1
Chr5_+_24396981 0.31 AT5G60690.1
REV
Homeobox-leucine zipper family protein / lipid-binding START domain-containing protein
Chr5_-_5310951 0.31 AT5G16250.1
AT5G16250
transmembrane protein
Chr1_+_1215925 0.31 AT1G04480.1
AT1G04480
Ribosomal protein L14p/L23e family protein
Chr3_+_2622849 0.31 AT3G08640.1
AT3G08640
alphavirus core family protein (DUF3411)
Chr5_+_6144855 0.31 AT5G18520.1
Cand7
Lung seven transmembrane receptor family protein
Chr4_+_15490740 0.30 AT4G32030.2
AT4G32030
hypothetical protein
Chr5_+_4782909 0.30 AT5G14790.1
AT5G14790
ARM repeat superfamily protein
Chr4_+_15490566 0.30 AT4G32030.1
AT4G32030
hypothetical protein
Chr3_-_2137641 0.30 AT3G06770.2
AT3G06770
Pectin lyase-like superfamily protein
Chr2_-_2843338 0.30 AT2G06925.2
AT2G06925.1
PLA2-ALPHA
Phospholipase A2 family protein
Chr1_-_22749199 0.30 AT1G61640.2
AT1G61640.3
AT1G61640.1
AT1G61640
Protein kinase superfamily protein
Chr4_+_14368877 0.29 AT4G29140.1
ADS1
MATE efflux family protein
Chr3_+_16914525 0.29 AT3G46040.1
RPS15AD
ribosomal protein S15A D
Chr4_+_12872379 0.28 AT4G25070.2
AT4G25070.1
AT4G25070
caldesmon-like protein
Chr3_-_4799612 0.28 AT3G14370.1
WAG2
Protein kinase superfamily protein
Chr1_-_22417244 0.28 AT1G60890.2
AT1G60890.1
AT1G60890
Phosphatidylinositol-4-phosphate 5-kinase family protein
Chr5_+_18825100 0.28 AT5G46410.1
AT5G46410.2
AT5G46410.3
SSP4
SCP1-like small phosphatase 4
Chr3_+_1230746 0.28 AT3G04570.1
AHL19
AT-hook motif nuclear-localized protein 19
Chr2_-_19440355 0.28 AT2G47370.2
AT2G47370.1
AT2G47370
Calcium-dependent phosphotriesterase superfamily protein
Chr1_+_7493213 0.28 AT1G21400.3
AT1G21400.2
AT1G21400.5
AT1G21400.4
AT1G21400.6
AT1G21400.1
AT1G21400
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Chr3_+_16006508 0.28 AT3G44330.1
AT3G44330
M28 Zn-peptidase nicastrin
Chr1_+_4147962 0.28 AT1G12230.2
AT1G12230.1
AT1G12230
Aldolase superfamily protein
Chr4_-_15016977 0.28 AT4G30830.2
AT4G30830
myosin-like protein (Protein of unknown function, DUF593)
Chr5_-_6591305 0.28 AT5G19530.1
AT5G19530.2
ACL5
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_10861382 0.28 AT4G20070.1
AT4G20070.2
AAH
allantoate amidohydrolase
Chr3_+_19042858 0.27 AT3G51300.1
ROP1
RHO-related protein from plants 1
Chr1_-_983544 0.27 AT1G03870.1
FLA9
FASCICLIN-like arabinoogalactan 9
Chr5_+_4292704 0.27 AT5G13390.1
AT5G13390.2
NEF1
no exine formation 1
Chr3_+_22492811 0.27 AT3G60870.1
AHL18
AT-hook motif nuclear-localized protein 18
Chr3_+_5183641 0.27 AT3G15355.1
UBC25
ubiquitin-conjugating enzyme 25
Chr4_-_15896345 0.27 AT4G32920.1
AT4G32920
glycine-rich protein
Chr4_-_4637450 0.26 AT4G07820.1
AT4G07820
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr3_+_19975339 0.26 AT3G53950.1
AT3G53950
glyoxal oxidase-related protein
Chr5_+_4876515 0.26 AT5G15070.4
AT5G15070.3
AT5G15070.1
AT5G15070.5
AT5G15070.2
AT5G15070
Phosphoglycerate mutase-like family protein
Chr3_+_22979848 0.26 AT3G62060.1
AT3G62060.2
AT3G62060
Pectinacetylesterase family protein
Chr3_-_2250796 0.25 AT3G07100.1
ERMO2
Sec23/Sec24 protein transport family protein
Chr1_-_29436659 0.25 AT1G78240.2
AT1G78240.1
TSD2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr3_-_18666691 0.25 AT3G50340.1
AT3G50340
hypothetical protein
Chr5_+_1608988 0.25 AT5G05440.1
PYL5
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr5_+_25243405 0.25 AT5G62890.3
AT5G62890.1
AT5G62890
Xanthine/uracil permease family protein
Chr4_+_12870006 0.25 AT4G25050.2
AT4G25050.1
ACP4
acyl carrier protein 4
Chr3_+_5243432 0.25 AT3G15510.1
NAC2
NAC domain containing protein 2
Chr2_+_9995465 0.25 AT2G23460.1
XLG1
extra-large G-protein 1
Chr5_+_25243148 0.24 AT5G62890.2
AT5G62890.4
AT5G62890
Xanthine/uracil permease family protein
Chr2_+_18007629 0.24 AT2G43340.1
AT2G43340
hypothetical protein (DUF1685)
Chr1_+_7272526 0.24 AT1G20900.1
ESC
Putative AT-hook DNA-binding family protein
Chr5_+_25881033 0.24 AT5G64740.1
CESA6
cellulose synthase 6
Chr1_+_5543119 0.24 AT1G16190.1
AT1G16190.2
RAD23A
Rad23 UV excision repair protein family
Chr5_+_2016566 0.24 AT5G06590.2
AT5G06590.1
AT5G06590
hypothetical protein
Chr4_-_15896006 0.24 AT4G32920.2
AT4G32920.3
AT4G32920
glycine-rich protein
Chr1_-_16689563 0.24 AT1G43980.1
AT1G43980
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_-_5104774 0.24 AT1G14810.2
AT1G14810.1
AT1G14810
semialdehyde dehydrogenase family protein
Chr1_-_25870420 0.23 AT1G68825.2
RTFL15
ROTUNDIFOLIA like 15
Chr2_-_18013252 0.23 AT2G43360.1
BIO2
Radical SAM superfamily protein
Chr2_-_15600154 0.23 AT2G37130.1
AT2G37130
Peroxidase superfamily protein
Chr1_+_10960908 0.23 AT1G30825.1
DIS2
Arp2/3 complex, 34 kD subunit p34-Arc
Chr5_-_19909452 0.23 AT5G49120.1
AT5G49120
DUF581 family protein, putative (DUF581)
Chr5_-_20272548 0.23 AT5G49870.2
AT5G49870
Mannose-binding lectin superfamily protein
Chr2_-_257568 0.22 AT2G01570.1
RGA1
GRAS family transcription factor family protein
Chr2_+_2180755 0.22 AT2G05760.1
AT2G05760
Xanthine/uracil permease family protein
Chr5_+_8571956 0.22 AT5G24915.1
AT5G24915

Chr2_-_15599951 0.22 AT2G37130.2
AT2G37130
Peroxidase superfamily protein
Chr4_-_10714745 0.22 AT4G19700.1
RING
SBP (S-ribonuclease binding protein) family protein
Chr4_-_18049252 0.22 AT4G38600.2
KAK
HECT ubiquitin protein ligase family protein KAK
Chr1_-_29084285 0.21 AT1G77390.1
CYCA1%3B2
CYCLIN A1;2
Chr1_+_12294394 0.21 AT1G33860.2
AT1G33860.1
AT1G33860
hypothetical protein
Chr5_-_20272895 0.21 AT5G49870.1
AT5G49870
Mannose-binding lectin superfamily protein
Chr3_+_23289243 0.21 AT3G63010.1
GID1B
alpha/beta-Hydrolases superfamily protein
Chr3_+_21147558 0.21 AT3G57130.2
AT3G57130.1
BOP1
Ankyrin repeat family protein / BTB/POZ domain-containing protein
Chr4_-_18049700 0.20 AT4G38600.1
AT4G38600.3
KAK
HECT ubiquitin protein ligase family protein KAK
Chr4_+_16708361 0.20 AT4G35100.1
PIP3
plasma membrane intrinsic protein 3
Chr4_-_16576753 0.20 AT4G34740.1
ASE2
GLN phosphoribosyl pyrophosphate amidotransferase 2
Chr4_+_16708552 0.20 AT4G35100.2
PIP3
plasma membrane intrinsic protein 3
Chr1_+_4260783 0.20 AT1G12490.1
AT1G12490
F-box associated ubiquitination effector family protein
Chr1_+_28185504 0.20 AT1G75080.1
AT1G75080.2
BZR1
Brassinosteroid signaling positive regulator (BZR1) family protein
Chr5_-_2403877 0.20 AT5G07590.1
AT5G07590.2
AT5G07590.4
AT5G07590.3
AT5G07590
Transducin/WD40 repeat-like superfamily protein
Chr2_-_18422839 0.20 AT2G44660.1
AT2G44660
ALG6, ALG8 glycosyltransferase family
Chr4_+_9290403 0.20 AT4G16480.2
INT4
inositol transporter 4
Chr3_+_1983731 0.19 AT3G06470.1
AT3G06470
GNS1/SUR4 membrane protein family
Chr5_-_23792382 0.19 AT5G58910.2
LAC16
laccase 16
Chr1_-_11406017 0.19 AT1G31810.2
AFH14
Formin Homology 14
Chr2_-_2743438 0.19 AT2G06830.1
AT2G06830

Chr2_+_749881 0.19 AT2G02690.2
AT2G02690.1
AT2G02690
Cysteine/Histidine-rich C1 domain family protein
Chr5_+_8428078 0.19 AT5G24610.1
AT5G24610
cyclic AMP-responsive element-binding protein
Chr5_-_23830520 0.19 AT5G59020.1
AT5G59020
hepatocyte growth factor activator, putative (DUF3527)
Chr3_-_4817981 0.19 AT3G14410.1
AT3G14410
Nucleotide/sugar transporter family protein
Chr5_+_4879115 0.19 AT5G15070.6
AT5G15070.7
AT5G15070
Phosphoglycerate mutase-like family protein
Chr5_+_7192239 0.19 AT5G21150.1
AGO9
Argonaute family protein
Chr1_+_325316 0.19 AT1G01950.1
AT1G01950.4
AT1G01950.3
AT1G01950.2
ARK2
armadillo repeat kinesin 2
Chr2_-_17669836 0.19 AT2G42440.1
ASL15
Lateral organ boundaries (LOB) domain family protein
Chr5_-_7265851 0.19 AT5G21280.2
AT5G21280.1
AT5G21280
hydroxyproline-rich glycoprotein family protein
Chr5_-_25843555 0.18 AT5G64660.1
CMPG2
CYS, MET, PRO, and GLY protein 2
Chr4_-_9241629 0.18 AT4G16340.1
SPK1
guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein
Chr5_-_5647807 0.18 AT5G17165.1
AT5G17165
hypothetical protein
Chr2_+_100484 0.18 AT2G01150.2
AT2G01150.3
AT2G01150.1
RHA2B
RING-H2 finger protein 2B
Chr1_+_5608682 0.18 AT1G16410.1
AT1G16410.2
CYP79F1
cytochrome p450 79f1
Chr4_-_9241384 0.18 AT4G16340.2
SPK1
guanyl-nucleotide exchange factors;GTPase binding;GTP binding protein
Chr1_+_3310930 0.18 AT1G10130.1
ECA3
endoplasmic reticulum-type calcium-transporting ATPase 3
Chr5_+_2680401 0.18 AT5G08330.1
TCP11
TCP family transcription factor
Chr5_-_26479577 0.18 AT5G66290.2
AT5G66290.1
AT5G66290.3
AT5G66290
hypothetical protein
Chr1_-_26042741 0.18 AT1G69270.1
RPK1
receptor-like protein kinase 1
Chr1_-_8153530 0.18 AT1G23020.2
AT1G23020.7
AT1G23020.6
AT1G23020.5
AT1G23020.4
AT1G23020.3
AT1G23020.1
FRO3
ferric reduction oxidase 3
Chr2_+_10860668 0.18 AT2G25520.1
AT2G25520
Drug/metabolite transporter superfamily protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G27010

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.8 GO:0046218 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.2 0.7 GO:0051973 positive regulation of telomerase activity(GO:0051973)
0.2 0.6 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.2 0.7 GO:0006097 glyoxylate cycle(GO:0006097)
0.1 0.8 GO:1904961 quiescent center organization(GO:1904961)
0.1 0.6 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.1 0.5 GO:0072351 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.1 1.5 GO:0046520 sphingoid biosynthetic process(GO:0046520)
0.1 1.1 GO:0048579 negative regulation of long-day photoperiodism, flowering(GO:0048579)
0.1 0.9 GO:0031222 arabinan catabolic process(GO:0031222)
0.1 0.8 GO:0019320 hexose catabolic process(GO:0019320)
0.1 0.5 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 1.2 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.1 0.3 GO:0010289 homogalacturonan biosynthetic process(GO:0010289)
0.1 0.7 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.1 0.3 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.1 0.3 GO:0080140 regulation of jasmonic acid metabolic process(GO:0080140) regulation of jasmonic acid biosynthetic process(GO:0080141)
0.1 0.2 GO:0010433 nectary development(GO:0010254) bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.1 0.8 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.1 0.2 GO:0032196 transposition(GO:0032196)
0.1 0.2 GO:0009945 radial axis specification(GO:0009945)
0.1 0.3 GO:0032309 icosanoid secretion(GO:0032309) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.1 0.2 GO:0006768 biotin metabolic process(GO:0006768) biotin biosynthetic process(GO:0009102)
0.1 0.3 GO:0010136 ureide metabolic process(GO:0010135) ureide catabolic process(GO:0010136)
0.1 0.3 GO:0080119 ER body organization(GO:0080119)
0.1 0.9 GO:0010105 negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298)
0.0 0.2 GO:0072698 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.0 0.3 GO:0009855 determination of bilateral symmetry(GO:0009855)
0.0 0.1 GO:0055089 fatty acid homeostasis(GO:0055089)
0.0 0.3 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.0 1.7 GO:0055072 iron ion homeostasis(GO:0055072)
0.0 0.3 GO:0090356 negative regulation of auxin metabolic process(GO:0090356)
0.0 0.5 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.6 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.2 GO:0007188 G-protein coupled receptor signaling pathway, coupled to cyclic nucleotide second messenger(GO:0007187) adenylate cyclase-modulating G-protein coupled receptor signaling pathway(GO:0007188)
0.0 0.3 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.0 0.3 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.0 0.2 GO:0055071 manganese ion homeostasis(GO:0055071)
0.0 0.5 GO:0048759 xylem vessel member cell differentiation(GO:0048759)
0.0 0.2 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.0 0.7 GO:0006636 unsaturated fatty acid biosynthetic process(GO:0006636)
0.0 0.3 GO:0033206 meiotic cytokinesis(GO:0033206)
0.0 0.1 GO:0097036 regulation of plasma membrane sterol distribution(GO:0097036)
0.0 0.3 GO:0030834 regulation of actin filament depolymerization(GO:0030834)
0.0 0.3 GO:0070534 protein K63-linked ubiquitination(GO:0070534)
0.0 0.2 GO:0006549 isoleucine metabolic process(GO:0006549) isoleucine biosynthetic process(GO:0009097)
0.0 0.3 GO:0009113 purine nucleobase biosynthetic process(GO:0009113)
0.0 0.9 GO:0030832 regulation of actin polymerization or depolymerization(GO:0008064) regulation of actin filament length(GO:0030832)
0.0 0.3 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.0 0.4 GO:0010052 guard cell differentiation(GO:0010052)
0.0 0.2 GO:0010951 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.2 GO:0048317 seed morphogenesis(GO:0048317)
0.0 0.1 GO:0015959 diadenosine polyphosphate metabolic process(GO:0015959) diadenosine tetraphosphate metabolic process(GO:0015965)
0.0 0.1 GO:0042447 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.0 0.2 GO:1901141 regulation of lignin biosynthetic process(GO:1901141)
0.0 0.3 GO:0045824 negative regulation of innate immune response(GO:0045824)
0.0 0.1 GO:0010422 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.1 GO:0010358 leaf shaping(GO:0010358)
0.0 0.4 GO:0006833 water transport(GO:0006833) fluid transport(GO:0042044)
0.0 0.1 GO:0046085 adenosine metabolic process(GO:0046085)
0.0 0.3 GO:0009556 microsporogenesis(GO:0009556)
0.0 0.2 GO:0010047 fruit dehiscence(GO:0010047)
0.0 0.4 GO:0010229 inflorescence development(GO:0010229)
0.0 0.5 GO:0006284 base-excision repair(GO:0006284)
0.0 0.6 GO:0006487 protein N-linked glycosylation(GO:0006487)
0.0 0.2 GO:0034063 stress granule assembly(GO:0034063)
0.0 0.3 GO:0007186 G-protein coupled receptor signaling pathway(GO:0007186)
0.0 0.4 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.4 GO:0010091 trichome branching(GO:0010091)
0.0 0.3 GO:0009825 multidimensional cell growth(GO:0009825)
0.0 0.2 GO:0006826 iron ion transport(GO:0006826)
0.0 0.1 GO:0090057 root radial pattern formation(GO:0090057)
0.0 0.1 GO:0080187 floral organ senescence(GO:0080187)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0009514 glyoxysome(GO:0009514)
0.1 0.6 GO:0070971 endoplasmic reticulum exit site(GO:0070971)
0.1 0.2 GO:0010330 cellulose synthase complex(GO:0010330)
0.0 0.4 GO:0000312 plastid small ribosomal subunit(GO:0000312)
0.0 0.3 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.0 0.5 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.2 GO:0048476 Holliday junction resolvase complex(GO:0048476)
0.0 0.2 GO:0005834 heterotrimeric G-protein complex(GO:0005834)
0.0 0.7 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 0.1 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.0 0.5 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.1 GO:0005787 signal peptidase complex(GO:0005787)
0.0 2.7 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.3 GO:0045177 apical part of cell(GO:0045177)
0.0 1.6 GO:0046658 anchored component of plasma membrane(GO:0046658)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.5 GO:0000170 sphingosine hydroxylase activity(GO:0000170)
0.2 1.1 GO:0003680 AT DNA binding(GO:0003680)
0.2 0.8 GO:0046537 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537)
0.2 2.1 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.1 0.6 GO:0004512 inositol-3-phosphate synthase activity(GO:0004512)
0.1 0.6 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.1 0.5 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.1 0.7 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.6 GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity(GO:0003830)
0.1 0.7 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.1 0.4 GO:0072328 ethylene receptor activity(GO:0038199) ethylene binding(GO:0051740) alkene binding(GO:0072328)
0.1 0.3 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.1 0.4 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.1 0.9 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 0.2 GO:0010331 gibberellin binding(GO:0010331)
0.1 0.2 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.1 0.2 GO:0070283 radical SAM enzyme activity(GO:0070283)
0.1 0.7 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.1 0.3 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.1 0.3 GO:0016768 spermine synthase activity(GO:0016768)
0.0 0.2 GO:0031683 G-protein coupled receptor binding(GO:0001664) G-protein beta/gamma-subunit complex binding(GO:0031683)
0.0 0.2 GO:1990841 promoter-specific chromatin binding(GO:1990841)
0.0 0.5 GO:0003905 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.0 0.1 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.0 0.2 GO:0035197 siRNA binding(GO:0035197)
0.0 0.3 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.0 0.6 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.7 GO:0008143 poly(A) binding(GO:0008143)
0.0 0.1 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 0.4 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.0 0.1 GO:0004839 ubiquitin activating enzyme activity(GO:0004839)
0.0 1.8 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.3 GO:0070180 large ribosomal subunit rRNA binding(GO:0070180)
0.0 0.1 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.3 GO:0004714 transmembrane receptor protein tyrosine kinase activity(GO:0004714)
0.0 0.3 GO:0016813 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amidines(GO:0016813)
0.0 0.5 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.1 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.0 0.3 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.4 GO:0005372 water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250)
0.0 0.7 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 0.4 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.2 GO:0051192 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process(GO:0000036) ACP phosphopantetheine attachment site binding(GO:0044620) prosthetic group binding(GO:0051192)
0.0 0.1 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.6 GO:0022843 voltage-gated cation channel activity(GO:0022843)
0.0 0.1 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.0 0.3 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.0 0.3 GO:0008420 CTD phosphatase activity(GO:0008420)
0.0 0.1 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.0 0.2 GO:0070628 proteasome binding(GO:0070628)
0.0 0.0 GO:0047912 galacturonokinase activity(GO:0047912)
0.0 0.4 GO:0005179 hormone activity(GO:0005179)
0.0 0.1 GO:0005546 phosphatidylinositol-4,5-bisphosphate binding(GO:0005546)
0.0 0.2 GO:0004675 transmembrane receptor protein serine/threonine kinase activity(GO:0004675)
0.0 0.3 GO:0016760 cellulose synthase (UDP-forming) activity(GO:0016760)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 PID ENDOTHELIN PATHWAY Endothelins

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS Genes involved in p130Cas linkage to MAPK signaling for integrins
0.0 0.2 REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT Genes involved in Lipid digestion, mobilization, and transport
0.0 0.4 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.1 REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION Genes involved in Antigen processing: Ubiquitination & Proteasome degradation