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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G27010
Z-value: 0.84
Transcription factors associated with AT3G27010
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G27010
|
AT3G27010 | TEOSINTE BRANCHED 1, cycloidea, PCF (TCP)-domain family protein 20 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCP20 | arTal_v1_Chr3_-_9958921_9958945 | -0.15 | 6.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_18821889_18821889 Show fit | 1.23 |
AT2G45680.1
|
TCP family transcription factor |
|
| arTal_v1_Chr3_+_2441565_2441657 Show fit | 1.08 |
AT3G07650.4
AT3G07650.1 AT3G07650.3 AT3G07650.2 |
CONSTANS-like 9 |
|
| arTal_v1_Chr5_+_5205869_5205869 Show fit | 1.00 |
AT5G15950.1
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr5_+_5206156_5206156 Show fit | 0.97 |
AT5G15950.2
|
Adenosylmethionine decarboxylase family protein |
|
| arTal_v1_Chr1_+_209208_209208 Show fit | 0.96 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_+_208995_208995 Show fit | 0.96 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
| arTal_v1_Chr1_-_3167924_3167924 Show fit | 0.80 |
AT1G09780.1
|
Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 0.73 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr1_-_4882003_4882003 Show fit | 0.73 |
AT1G14290.2
|
sphingoid base hydroxylase 2 |
|
| arTal_v1_Chr1_-_4882265_4882265 Show fit | 0.72 |
AT1G14290.1
|
sphingoid base hydroxylase 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G27010
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | GO:0046218 | tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218) |
| 0.0 | 1.7 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.1 | 1.5 | GO:0046520 | sphingoid biosynthetic process(GO:0046520) |
| 0.1 | 1.2 | GO:1900056 | negative regulation of leaf senescence(GO:1900056) |
| 0.1 | 1.1 | GO:0048579 | negative regulation of long-day photoperiodism, flowering(GO:0048579) |
| 0.1 | 0.9 | GO:0031222 | arabinan catabolic process(GO:0031222) |
| 0.1 | 0.9 | GO:0010105 | negative regulation of ethylene-activated signaling pathway(GO:0010105) negative regulation of phosphorelay signal transduction system(GO:0070298) |
| 0.0 | 0.9 | GO:0030832 | regulation of actin polymerization or depolymerization(GO:0008064) regulation of actin filament length(GO:0030832) |
| 0.1 | 0.8 | GO:1904961 | quiescent center organization(GO:1904961) |
| 0.1 | 0.8 | GO:0019320 | hexose catabolic process(GO:0019320) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.7 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 1.6 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.2 | 0.7 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.0 | 0.7 | GO:0010494 | cytoplasmic stress granule(GO:0010494) |
| 0.1 | 0.6 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
| 0.0 | 0.5 | GO:0005885 | Arp2/3 protein complex(GO:0005885) |
| 0.0 | 0.5 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 0.4 | GO:0000312 | plastid small ribosomal subunit(GO:0000312) |
| 0.0 | 0.3 | GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
| 0.0 | 0.3 | GO:0045177 | apical part of cell(GO:0045177) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 2.1 | GO:0000293 | ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723) |
| 0.0 | 1.8 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.5 | 1.5 | GO:0000170 | sphingosine hydroxylase activity(GO:0000170) |
| 0.2 | 1.1 | GO:0003680 | AT DNA binding(GO:0003680) |
| 0.1 | 0.9 | GO:0009044 | xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556) |
| 0.2 | 0.8 | GO:0046537 | 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity(GO:0046537) |
| 0.1 | 0.7 | GO:0045549 | 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549) |
| 0.1 | 0.7 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
| 0.1 | 0.7 | GO:0016833 | oxo-acid-lyase activity(GO:0016833) |
| 0.0 | 0.7 | GO:0008143 | poly(A) binding(GO:0008143) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | PID ENDOTHELIN PATHWAY | Endothelins |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.4 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 0.1 | 0.3 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
| 0.0 | 0.2 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.1 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |