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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G26790
Z-value: 3.78
Transcription factors associated with AT3G26790
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G26790
|
AT3G26790 | AP2/B3-like transcriptional factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| FUS3 | arTal_v1_Chr3_-_9856212_9856212 | 0.47 | 8.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_6130025_6130025 Show fit | 6.56 |
AT1G17810.1
|
beta-tonoplast intrinsic protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 6.46 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr3_+_20354351_20354351 Show fit | 5.66 |
AT3G54940.3
AT3G54940.2 |
Papain family cysteine protease |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 5.58 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 5.47 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr5_+_1119937_1119937 Show fit | 5.15 |
AT5G04120.1
|
Phosphoglycerate mutase family protein |
|
| arTal_v1_Chr3_-_7656053_7656053 Show fit | 4.84 |
AT3G21720.1
|
isocitrate lyase |
|
| arTal_v1_Chr1_+_12851983_12851983 Show fit | 4.77 |
AT1G35140.1
|
Phosphate-responsive 1 family protein |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 4.77 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 4.63 |
AT1G73330.1
|
drought-repressed 4 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G26790
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 12.6 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.1 | 11.8 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 6.9 | GO:0019915 | lipid storage(GO:0019915) |
| 0.6 | 6.8 | GO:0000304 | response to singlet oxygen(GO:0000304) |
| 0.3 | 6.8 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 6.5 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.1 | 6.4 | GO:0043086 | negative regulation of catalytic activity(GO:0043086) |
| 0.8 | 5.3 | GO:0009099 | valine biosynthetic process(GO:0009099) |
| 1.3 | 5.2 | GO:0046416 | D-amino acid metabolic process(GO:0046416) |
| 0.2 | 5.0 | GO:0010112 | regulation of systemic acquired resistance(GO:0010112) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 51.8 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 21.0 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.6 | 14.9 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 12.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 7.9 | GO:0005764 | lysosome(GO:0005764) |
| 0.1 | 7.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 6.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 1.7 | 5.0 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.1 | 4.3 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 3.7 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.6 | 12.5 | GO:0005372 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 1.1 | 12.3 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 11.9 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 6.7 | GO:0045735 | nutrient reservoir activity(GO:0045735) |
| 1.3 | 5.2 | GO:0004647 | phosphoserine phosphatase activity(GO:0004647) |
| 0.2 | 5.2 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.1 | 5.2 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.0 | 5.0 | GO:0005506 | iron ion binding(GO:0005506) |
| 0.1 | 4.7 | GO:0004857 | enzyme inhibitor activity(GO:0004857) |
| 0.2 | 4.6 | GO:0016837 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 3.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.4 | 1.9 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 1.6 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.7 | 1.3 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.9 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.1 | 0.7 | PID E2F PATHWAY | E2F transcription factor network |
| 0.2 | 0.6 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.2 | 0.6 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.0 | 0.1 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.0 | 0.1 | PID CMYB PATHWAY | C-MYB transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.0 | 4.1 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 1.0 | 3.1 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.2 | 1.3 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
| 0.1 | 1.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 1.1 | REACTOME BIOLOGICAL OXIDATIONS | Genes involved in Biological oxidations |
| 0.1 | 0.7 | REACTOME G1 PHASE | Genes involved in G1 Phase |
| 0.1 | 0.7 | REACTOME METABOLISM OF AMINO ACIDS AND DERIVATIVES | Genes involved in Metabolism of amino acids and derivatives |
| 0.2 | 0.6 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |