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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G26620

Z-value: 1.58

Transcription factors associated with AT3G26620

Gene Symbol Gene ID Gene Info
AT3G26620 LOB domain-containing protein 23

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
LBD23arTal_v1_Chr3_+_9790628_9790628-0.525.7e-02Click!

Activity profile of AT3G26620 motif

Sorted Z-values of AT3G26620 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr4_-_12337599 2.85 AT4G23680.1
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr5_+_2803833 2.59 AT5G08640.1
AT5G08640.2
flavonol synthase 1
Chr4_-_14830224 2.30 AT4G30290.1
xyloglucan endotransglucosylase/hydrolase 19
Chr1_-_27998821 2.30 AT1G74500.1
activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1
Chr4_-_14542565 2.10 AT4G29690.1
Alkaline-phosphatase-like family protein
Chr2_-_12889931 1.99 AT2G30210.1
laccase 3
Chr1_-_10127098 1.87 AT1G29025.1
Calcium-binding EF-hand family protein
Chr1_-_6241510 1.82 AT1G18140.1
laccase 1
Chr3_+_22129505 1.77 AT3G59900.1
auxin-regulated gene involved in organ size
Chr4_+_14517393 1.58 AT4G29610.1
Cytidine/deoxycytidylate deaminase family protein
Chr4_-_7493080 1.53 AT4G12730.1
FASCICLIN-like arabinogalactan 2
Chr5_+_3423381 1.48 AT5G10830.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_+_9592956 1.46 AT2G22590.1
UDP-Glycosyltransferase superfamily protein
Chr4_-_14545310 1.38 AT4G29700.1
Alkaline-phosphatase-like family protein
Chr1_+_9427804 1.38 AT1G27140.1
glutathione S-transferase tau 14
Chr4_-_17041131 1.37 AT4G36010.2
Pathogenesis-related thaumatin superfamily protein
Chr2_-_14295353 1.36 AT2G33790.1
arabinogalactan protein 30
Chr5_-_21092410 1.35 AT5G51890.1
Peroxidase superfamily protein
Chr4_-_17041326 1.35 AT4G36010.1
Pathogenesis-related thaumatin superfamily protein
Chr5_+_1835047 1.34 AT5G06090.1
glycerol-3-phosphate acyltransferase 7
Chr5_+_23187840 1.29 AT5G57220.1
cytochrome P450, family 81, subfamily F, polypeptide 2
Chr2_-_14541617 1.28 AT2G34500.1
cytochrome P450, family 710, subfamily A, polypeptide 1
Chr3_-_12451556 1.27 AT3G30775.2
AT3G30775.1
Methylenetetrahydrofolate reductase family protein
Chr4_+_17590772 1.25 AT4G37410.1
cytochrome P450, family 81, subfamily F, polypeptide 4
Chr2_+_15859204 1.21 AT2G37870.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_-_21798303 1.19 AT3G58990.1
isopropylmalate isomerase 1
Chr5_+_3580396 1.17 AT5G11230.1
Nucleotide-sugar transporter family protein
Chr2_-_16198577 1.17 AT2G38750.1
annexin 4
Chr4_+_13391293 1.16 AT4G26530.2
AT4G26530.1
Aldolase superfamily protein
Chr5_+_1153740 1.14 AT5G04200.1
metacaspase 9
Chr2_-_17441416 1.14 AT2G41810.1
imidazolonepropionase (Protein of unknown function, DUF642)
Chr4_-_10731808 1.14 AT4G19720.1
Glycosyl hydrolase family protein with chitinase insertion domain-containing protein
Chr2_-_16198832 1.13 AT2G38750.2
annexin 4
Chr4_+_13390754 1.12 AT4G26530.3
Aldolase superfamily protein
Chr3_+_6227341 1.11 AT3G18170.2
Glycosyltransferase family 61 protein
Chr3_-_16487349 1.11 AT3G45070.1
AT3G45070.3
AT3G45070.2
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_+_17583992 1.10 AT4G37400.1
cytochrome P450, family 81, subfamily F, polypeptide 3
Chr1_-_624567 1.10 AT1G02820.1
Late embryogenesis abundant 3 (LEA3) family protein
Chr3_+_3595694 1.06 AT3G11430.1
glycerol-3-phosphate acyltransferase 5
Chr3_+_9195334 1.06 AT3G25250.1
AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
Chr1_+_23112933 1.06 AT1G62440.1
leucine-rich repeat/extensin 2
Chr3_+_6228342 1.05 AT3G18170.1
Glycosyltransferase family 61 protein
Chr2_-_13386392 0.99 AT2G31390.1
pfkB-like carbohydrate kinase family protein
Chr5_-_15461459 0.98 AT5G38610.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr3_-_18193729 0.97 AT3G49070.1
AT3G49070.2
transmembrane protein, putative (DUF677)
Chr1_+_2873465 0.96 AT1G08930.2
Major facilitator superfamily protein
Chr1_+_8401808 0.96 AT1G23760.1
BURP domain-containing protein
Chr1_+_2873300 0.96 AT1G08930.1
Major facilitator superfamily protein
Chr4_-_13016235 0.95 AT4G25470.1
C-repeat/DRE binding factor 2
Chr5_+_18875382 0.95 AT5G46530.1
AWPM-19-like family protein
Chr4_+_13811612 0.94 AT4G27654.1
transmembrane protein
Chr4_-_17376279 0.94 AT4G36880.1
cysteine proteinase1
Chr3_+_22514027 0.93 AT3G60930.2

Chr4_-_17711031 0.90 AT4G37700.1
hypothetical protein
Chr2_-_15186852 0.90 AT2G36210.1
SAUR-like auxin-responsive protein family
Chr5_+_24667873 0.89 AT5G61350.1
Protein kinase superfamily protein
Chr1_+_1510404 0.88 AT1G05210.1
Transmembrane protein 97, Putative
Chr4_-_9368852 0.88 AT4G16640.1
Matrixin family protein
Chr4_-_17672353 0.87 AT4G37610.1
BTB and TAZ domain protein 5
Chr3_-_202754 0.87 AT3G01513.1
hypothetical protein
Chr1_-_1161982 0.86 AT1G04330.1
hypothetical protein
Chr3_+_22514415 0.85 AT3G60930.1

Chr2_-_11599322 0.83 AT2G27140.1
HSP20-like chaperones superfamily protein
Chr4_+_334573 0.83 AT4G00780.1
TRAF-like family protein
Chr4_-_6425678 0.82 AT4G10370.1
Cysteine/Histidine-rich C1 domain family protein
Chr1_-_22249721 0.82 AT1G60390.1
polygalacturonase 1
Chr4_-_8854706 0.82 AT4G15490.1
UDP-Glycosyltransferase superfamily protein
Chr5_-_671687 0.81 AT5G02890.1
HXXXD-type acyl-transferase family protein
Chr1_-_29474003 0.81 AT1G78340.1
glutathione S-transferase TAU 22
Chr2_+_13704068 0.81 AT2G32270.1
zinc transporter 3 precursor
Chr4_-_10391298 0.80 AT4G18970.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_-_10390991 0.79 AT4G18970.2
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr4_+_12686459 0.78 AT4G24570.1
dicarboxylate carrier 2
Chr2_-_7434172 0.74 AT2G17080.1
hypothetical protein (DUF241)
Chr2_+_19253670 0.74 AT2G46860.1
pyrophosphorylase 3
Chr4_-_8369312 0.74 AT4G14580.1
CBL-interacting protein kinase 4
Chr3_-_23299126 0.73 AT3G63052.1
hypothetical protein
Chr3_+_15598179 0.72 AT3G43690.1

Chr3_+_22142856 0.72 AT3G59940.1
Galactose oxidase/kelch repeat superfamily protein
Chr1_+_21316730 0.71 AT1G57560.2
AT1G57560.1
myb domain protein 50
Chr2_+_16658468 0.71 AT2G39900.1
GATA type zinc finger transcription factor family protein
Chr2_-_16690182 0.71 AT2G39980.1
HXXXD-type acyl-transferase family protein
Chr1_-_1702749 0.70 AT1G05675.1
UDP-Glycosyltransferase superfamily protein
Chr1_+_24795214 0.70 AT1G66470.1
ROOT HAIR DEFECTIVE6
Chr5_+_23728588 0.70 AT5G58750.1
AT5G58750.2
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_-_29239484 0.69 AT1G77760.1
nitrate reductase 1
Chr3_+_634465 0.68 AT3G02880.1
Leucine-rich repeat protein kinase family protein
Chr1_-_3931701 0.68 AT1G11670.1
MATE efflux family protein
Chr5_+_7524086 0.68 AT5G22630.1
arogenate dehydratase 5
Chr1_+_310169 0.67 AT1G01900.1
subtilase family protein
Chr1_-_8983314 0.67 AT1G25560.1
AP2/B3 transcription factor family protein
Chr3_-_18469962 0.66 AT3G49790.1
Carbohydrate-binding protein
Chr1_-_3592580 0.66 AT1G10770.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr2_+_1594588 0.65 AT2G04570.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_-_10439469 0.64 AT2G24570.1
WRKY DNA-binding protein 17
Chr1_+_20137537 0.64 AT1G53920.1
GDSL-motif lipase 5
Chr1_+_22893101 0.64 AT1G61930.1
senescence regulator (Protein of unknown function, DUF584)
Chr1_+_6945695 0.63 AT1G20030.1
Pathogenesis-related thaumatin superfamily protein
Chr4_+_700566 0.63 AT4G01630.1
expansin A17
Chr4_-_13486858 0.63 AT4G26780.1
Co-chaperone GrpE family protein
Chr1_+_6945425 0.62 AT1G20030.2
Pathogenesis-related thaumatin superfamily protein
Chr1_-_867705 0.62 AT1G03470.2
AT1G03470.1
AT1G03470.3
AT1G03470.4
Kinase interacting (KIP1-like) family protein
Chr2_+_7674319 0.62 AT2G17670.1
AT2G17670.2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_9564850 0.61 AT2G22500.1
uncoupling protein 5
Chr5_+_21307016 0.61 AT5G52510.1
SCARECROW-like 8
Chr1_+_23727794 0.61 AT1G63930.1
from the Czech 'roh' meaning 'corner'
Chr1_+_18098081 0.60 AT1G48920.1
nucleolin like 1
Chr3_-_8119490 0.60 AT3G22910.1
ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Chr5_-_9000345 0.59 AT5G25820.1
Exostosin family protein
Chr3_+_5344989 0.59 AT3G15800.1
Glycosyl hydrolase superfamily protein
Chr2_-_19638678 0.59 AT2G47990.1
transducin family protein / WD-40 repeat family protein
Chr2_+_13678910 0.59 AT2G32220.1
Ribosomal L27e protein family
Chr2_-_6453797 0.59 AT2G14960.1
Auxin-responsive GH3 family protein
Chr5_-_5038754 0.58 AT5G15520.1
Ribosomal protein S19e family protein
Chr2_-_14432482 0.57 AT2G34180.1
CBL-interacting protein kinase 13
Chr2_-_7768040 0.57 AT2G17880.1
Chaperone DnaJ-domain superfamily protein
Chr5_-_19172956 0.57 AT5G47220.1
ethylene responsive element binding factor 2
Chr1_-_9890875 0.57 AT1G28290.2
AT1G28290.1
arabinogalactan protein 31
Chr3_+_1591115 0.56 AT3G05490.1
ralf-like 22
Chr5_+_4338231 0.56 AT5G13500.3
AT5G13500.2
Hyp O-arabinosyltransferase-like protein
Chr5_-_924728 0.55 AT5G03630.1
Pyridine nucleotide-disulfide oxidoreductase family protein
Chr4_+_12977192 0.55 AT4G25390.1
AT4G25390.2
Protein kinase superfamily protein
Chr4_-_5162774 0.54 AT4G08160.2
AT4G08160.1
glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein
Chr3_+_7304127 0.53 AT3G20850.1
proline-rich family protein
Chr3_-_7634223 0.53 AT3G21680.1
hypothetical protein
Chr2_+_3618058 0.53 AT2G08986.1
hypothetical protein
Chr5_+_1378954 0.53 AT5G04770.3
cationic amino acid transporter 6
Chr2_-_15846051 0.52 AT2G37810.1
Cysteine/Histidine-rich C1 domain family protein
Chr5_-_16434458 0.52 AT5G41050.1
Pollen Ole e 1 allergen and extensin family protein
Chr5_-_9944942 0.52 AT5G27920.1
F-box family protein
Chr2_+_15158561 0.52 AT2G36090.1
F-box family protein
Chr5_+_1378788 0.52 AT5G04770.2
cationic amino acid transporter 6
Chr5_-_5726912 0.52 AT5G17380.1
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
Chr3_-_18666691 0.51 AT3G50340.1
hypothetical protein
Chr5_+_4337894 0.51 AT5G13500.1
Hyp O-arabinosyltransferase-like protein
Chr5_+_1378621 0.51 AT5G04770.1
cationic amino acid transporter 6
Chr2_-_19544910 0.51 AT2G47670.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr5_+_8082650 0.51 AT5G23950.2
AT5G23950.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr3_-_19544310 0.51 AT3G52730.2
AT3G52730.1
ubiquinol-cytochrome C reductase UQCRX/QCR9-like family protein
Chr3_-_22280691 0.51 AT3G60280.1
uclacyanin 3
Chr1_+_3252098 0.50 AT1G09970.1
Leucine-rich receptor-like protein kinase family protein
Chr5_+_25322975 0.50 AT5G63130.2
AT5G63130.1
Octicosapeptide/Phox/Bem1p family protein
Chr1_+_3252317 0.50 AT1G09970.2
Leucine-rich receptor-like protein kinase family protein
Chr3_+_3186266 0.50 AT3G10300.3
AT3G10300.2
AT3G10300.1
AT3G10300.5
AT3G10300.4
Calcium-binding EF-hand family protein
Chr5_-_25661007 0.50 AT5G64120.1
Peroxidase superfamily protein
Chr1_-_1547798 0.50 AT1G05300.2
AT1G05300.1
zinc transporter 5 precursor
Chr4_+_2567183 0.49 AT4G05010.1
F-box family protein
Chr3_-_5216261 0.49 AT3G15460.1
Ribosomal RNA processing Brix domain protein
Chr5_+_7185897 0.49 AT5G21130.1
Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family
Chr1_+_1469541 0.49 AT1G05100.1
mitogen-activated protein kinase kinase kinase 18
Chr5_+_3825420 0.49 AT5G11870.2
AT5G11870.1
Alkaline phytoceramidase (aPHC)
Chr2_-_16244531 0.49 AT2G38905.1
Low temperature and salt responsive protein family
Chr5_-_1760666 0.48 AT5G05840.1
replication factor C subunit, putative (DUF620)
Chr5_+_25518404 0.48 AT5G63770.1
AT5G63770.2
diacylglycerol kinase 2
Chr5_+_26749826 0.48 AT5G67020.1
hypothetical protein
Chr1_-_25208972 0.48 AT1G67320.1
AT1G67320.3
AT1G67320.2
DNA primase, large subunit family
Chr5_+_6652306 0.48 AT5G19690.1
AT5G19690.2
staurosporin and temperature sensitive 3-like A
Chr3_+_10848241 0.48 AT3G28850.1
Glutaredoxin family protein
Chr3_-_22256177 0.47 AT3G60220.1
TOXICOS EN LEVADURA 4
Chr5_+_2580422 0.47 AT5G08060.1
furry
Chr3_-_42159 0.47 AT3G01120.1
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr1_+_11349697 0.47 AT1G31710.1
Copper amine oxidase family protein
Chr5_+_7147890 0.47 AT5G21050.1
hyccin
Chr4_+_18406627 0.47 AT4G39660.1
AT4G39660.2
alanine:glyoxylate aminotransferase 2
Chr2_-_13747810 0.46 AT2G32380.1
Transmembrane protein 97, Putative
Chr1_+_2888427 0.46 AT1G08990.1
plant glycogenin-like starch initiation protein 5
Chr3_-_16253535 0.46 AT3G44710.1
transmembrane protein, putative (DUF247)
Chr4_+_160643 0.46 AT4G00360.1
cytochrome P450, family 86, subfamily A, polypeptide 2
Chr5_-_20823299 0.46 AT5G51220.3
AT5G51220.2
AT5G51220.1
ubiquinol-cytochrome C chaperone family protein
Chr3_-_4229752 0.46 AT3G13150.1
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr1_+_4147962 0.46 AT1G12230.2
AT1G12230.1
Aldolase superfamily protein
Chr5_-_4574541 0.46 AT5G14180.3
AT5G14180.5
AT5G14180.1
Myzus persicae-induced lipase 1
Chr2_+_18253610 0.45 AT2G44130.1
Galactose oxidase/kelch repeat superfamily protein
Chr4_+_14307195 0.45 AT4G29030.1
Putative membrane lipoprotein
Chr2_-_13549571 0.45 AT2G31865.3
AT2G31865.1
AT2G31865.2
poly(ADP-ribose) glycohydrolase 2
Chr3_+_241739 0.45 AT3G01650.1
AT3G01650.2
RING domain ligase1
Chr3_-_2327651 0.45 AT3G07300.2
AT3G07300.1
AT3G07300.3
NagB/RpiA/CoA transferase-like superfamily protein
Chr2_-_3379885 0.44 AT2G07704.1

Chr3_+_5121303 0.44 AT3G15210.1
ethylene responsive element binding factor 4
Chr5_-_3044546 0.44 AT5G09800.1
ARM repeat superfamily protein
Chr3_+_3186038 0.44 AT3G10300.6
Calcium-binding EF-hand family protein
Chr4_+_14566183 0.44 AT4G29740.3
AT4G29740.2
AT4G29740.1
cytokinin oxidase 4
Chr5_+_3150586 0.44 AT5G10080.1
Eukaryotic aspartyl protease family protein
Chr1_+_116784 0.44 AT1G01300.1
Eukaryotic aspartyl protease family protein
Chr2_-_15214340 0.44 AT2G36300.1
Integral membrane Yip1 family protein
Chr3_-_19199498 0.43 AT3G51760.2
AT3G51760.1
AT3G51760.3
AT3G51760.4
hypothetical protein (DUF688)
Chr3_+_7644265 0.43 AT3G21700.3
AT3G21700.1
AT3G21700.2
Ras-related small GTP-binding family protein
Chr1_+_23730106 0.43 AT1G63940.4
AT1G63940.3
monodehydroascorbate reductase 6
Chr4_+_9759203 0.43 AT4G17500.1
ethylene responsive element binding factor 1
Chr3_+_1246669 0.42 AT3G04605.1

Chr1_+_28163344 0.42 AT1G75000.1
GNS1/SUR4 membrane protein family
Chr1_+_23729875 0.42 AT1G63940.2
AT1G63940.1
monodehydroascorbate reductase 6
Chr1_-_20838778 0.42 AT1G55740.1
seed imbibition 1
Chr5_+_24608605 0.42 AT5G61160.1
anthocyanin 5-aromatic acyltransferase 1
Chr2_+_15192480 0.42 AT2G36220.1
hypothetical protein
Chr4_+_1306313 0.42 AT4G02940.1
oxidoreductase, 2OG-Fe(II) oxygenase family protein
Chr1_-_22067076 0.41 AT1G59940.1
response regulator 3
Chr1_+_204935 0.41 AT1G01570.2
transferring glycosyl group transferase (DUF604)
Chr5_-_4573137 0.41 AT5G14180.4
AT5G14180.2
Myzus persicae-induced lipase 1
Chr4_+_9871761 0.41 AT4G17760.2
AT4G17760.1
PCNA domain-containing protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G26620

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.5 1.4 GO:0071422 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.4 2.3 GO:0010086 embryonic root morphogenesis(GO:0010086)
0.4 1.8 GO:0046622 positive regulation of organ growth(GO:0046622)
0.3 2.6 GO:0016045 detection of bacterium(GO:0016045)
0.3 1.6 GO:0046087 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.2 1.3 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.2 0.8 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.2 0.6 GO:0009264 deoxyribonucleotide catabolic process(GO:0009264)
0.2 0.5 GO:0017062 respiratory chain complex III assembly(GO:0017062) mitochondrial respiratory chain complex III assembly(GO:0034551) mitochondrial respiratory chain complex III biogenesis(GO:0097033)
0.1 2.8 GO:0046341 CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341)
0.1 2.0 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.1 0.4 GO:0019593 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.1 2.1 GO:0042343 indole glucosinolate metabolic process(GO:0042343)
0.1 0.4 GO:0002188 translation reinitiation(GO:0002188)
0.1 2.3 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.1 0.4 GO:0010246 rhamnogalacturonan I biosynthetic process(GO:0010246)
0.1 0.5 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.1 0.4 GO:0042353 fucose biosynthetic process(GO:0042353)
0.1 0.5 GO:0001887 selenium compound metabolic process(GO:0001887)
0.1 0.1 GO:0015744 succinate transport(GO:0015744)
0.1 0.3 GO:0045981 regulation of oxidative phosphorylation(GO:0002082) positive regulation of nucleoside metabolic process(GO:0045979) positive regulation of nucleotide metabolic process(GO:0045981) positive regulation of purine nucleotide metabolic process(GO:1900544) positive regulation of ATP metabolic process(GO:1903580) positive regulation of oxidative phosphorylation(GO:1903862)
0.1 0.4 GO:0035964 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.1 0.3 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.1 1.3 GO:0006560 proline metabolic process(GO:0006560)
0.1 1.2 GO:0009098 leucine biosynthetic process(GO:0009098)
0.1 0.4 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.1 1.0 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.1 0.2 GO:0006369 termination of RNA polymerase II transcription(GO:0006369)
0.1 0.2 GO:0030811 regulation of glycolytic process(GO:0006110) regulation of nucleotide catabolic process(GO:0030811) regulation of carbohydrate catabolic process(GO:0043470) regulation of cellular carbohydrate catabolic process(GO:0043471)
0.1 0.6 GO:2000114 regulation of establishment of cell polarity(GO:2000114)
0.1 0.9 GO:0009094 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.1 0.8 GO:0006360 transcription from RNA polymerase I promoter(GO:0006360)
0.1 0.1 GO:0010269 response to selenium ion(GO:0010269)
0.1 1.1 GO:0006026 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.1 0.6 GO:0000478 endonucleolytic cleavage involved in rRNA processing(GO:0000478)
0.1 1.6 GO:0003333 amino acid transmembrane transport(GO:0003333)
0.1 0.5 GO:0080148 negative regulation of response to water deprivation(GO:0080148)
0.1 0.5 GO:0006122 mitochondrial electron transport, ubiquinol to cytochrome c(GO:0006122)
0.1 0.6 GO:0031542 positive regulation of anthocyanin biosynthetic process(GO:0031542)
0.1 0.5 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.1 0.5 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.1 0.3 GO:0009647 skotomorphogenesis(GO:0009647)
0.1 0.6 GO:0048354 mucilage biosynthetic process involved in seed coat development(GO:0048354)
0.1 0.8 GO:0010161 red light signaling pathway(GO:0010161)
0.1 0.5 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.1 0.5 GO:0072659 protein localization to plasma membrane(GO:0072659)
0.1 0.4 GO:0009061 anaerobic respiration(GO:0009061)
0.0 0.4 GO:0006446 regulation of translational initiation(GO:0006446)
0.0 0.4 GO:0009435 NAD biosynthetic process(GO:0009435)
0.0 2.2 GO:0006749 glutathione metabolic process(GO:0006749)
0.0 0.2 GO:0006106 fumarate metabolic process(GO:0006106)
0.0 0.2 GO:0019586 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.0 0.1 GO:0019368 fatty acid elongation, saturated fatty acid(GO:0019367) fatty acid elongation, unsaturated fatty acid(GO:0019368) fatty acid elongation, monounsaturated fatty acid(GO:0034625) fatty acid elongation, polyunsaturated fatty acid(GO:0034626)
0.0 0.3 GO:0000187 activation of MAPK activity(GO:0000187) positive regulation of MAP kinase activity(GO:0043406)
0.0 0.1 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.0 0.4 GO:0010117 photoprotection(GO:0010117)
0.0 0.1 GO:0009945 radial axis specification(GO:0009945)
0.0 0.2 GO:0007142 male meiosis II(GO:0007142)
0.0 0.3 GO:1901002 positive regulation of response to salt stress(GO:1901002)
0.0 0.1 GO:0010351 lithium ion transport(GO:0010351)
0.0 0.1 GO:0009831 plant-type cell wall modification involved in multidimensional cell growth(GO:0009831)
0.0 0.2 GO:0032957 inositol trisphosphate metabolic process(GO:0032957)
0.0 0.3 GO:1902290 positive regulation of defense response to oomycetes(GO:1902290)
0.0 0.2 GO:0051754 meiotic sister chromatid cohesion, centromeric(GO:0051754)
0.0 0.7 GO:0061572 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.0 0.1 GO:0090615 mitochondrial mRNA processing(GO:0090615)
0.0 0.4 GO:0010120 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.0 1.3 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.8 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.1 GO:0002100 tRNA wobble adenosine to inosine editing(GO:0002100)
0.0 0.2 GO:0019632 shikimate metabolic process(GO:0019632)
0.0 0.4 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 1.9 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 0.3 GO:0071249 cellular response to nitrate(GO:0071249)
0.0 0.2 GO:0032951 regulation of beta-glucan metabolic process(GO:0032950) regulation of beta-glucan biosynthetic process(GO:0032951) CTP salvage(GO:0044211) regulation of cellulose biosynthetic process(GO:2001006)
0.0 0.3 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0 0.2 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.0 0.4 GO:2000122 negative regulation of stomatal complex development(GO:2000122)
0.0 0.6 GO:0009269 response to desiccation(GO:0009269)
0.0 0.3 GO:0006893 Golgi to plasma membrane transport(GO:0006893)
0.0 0.4 GO:0032981 mitochondrial respiratory chain complex I assembly(GO:0032981) mitochondrial respiratory chain complex I biogenesis(GO:0097031)
0.0 0.2 GO:0048766 root hair initiation(GO:0048766)
0.0 0.2 GO:0080190 lateral growth(GO:0080190)
0.0 0.6 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 0.5 GO:0070816 phosphorylation of RNA polymerase II C-terminal domain(GO:0070816)
0.0 0.1 GO:0045332 phospholipid translocation(GO:0045332)
0.0 0.3 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.5 GO:0047484 regulation of response to osmotic stress(GO:0047484)
0.0 0.3 GO:0000077 DNA damage checkpoint(GO:0000077)
0.0 2.9 GO:0010200 response to chitin(GO:0010200)
0.0 0.8 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.2 GO:0042128 nitrate metabolic process(GO:0042126) nitrate assimilation(GO:0042128)
0.0 0.5 GO:0006282 regulation of DNA repair(GO:0006282)
0.0 0.5 GO:0045492 xylan biosynthetic process(GO:0045492)
0.0 0.2 GO:0006488 dolichol-linked oligosaccharide biosynthetic process(GO:0006488)
0.0 0.1 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.0 0.6 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.2 GO:0032456 endocytic recycling(GO:0032456)
0.0 0.3 GO:0000712 resolution of meiotic recombination intermediates(GO:0000712)
0.0 0.1 GO:0046683 cell junction assembly(GO:0034329) response to organophosphorus(GO:0046683)
0.0 0.1 GO:0033385 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.0 0.2 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 1.0 GO:0009631 cold acclimation(GO:0009631)
0.0 0.1 GO:0019742 pentacyclic triterpenoid metabolic process(GO:0019742) pentacyclic triterpenoid biosynthetic process(GO:0019745)
0.0 0.8 GO:0006874 cellular calcium ion homeostasis(GO:0006874)
0.0 0.2 GO:0010600 regulation of auxin biosynthetic process(GO:0010600)
0.0 1.4 GO:2000280 regulation of root development(GO:2000280)
0.0 0.1 GO:1900034 regulation of cellular response to heat(GO:1900034)
0.0 1.5 GO:0006869 lipid transport(GO:0006869)
0.0 0.9 GO:0009566 fertilization(GO:0009566) double fertilization forming a zygote and endosperm(GO:0009567)
0.0 0.0 GO:0000730 DNA recombinase assembly(GO:0000730)
0.0 0.1 GO:0019048 modulation by virus of host morphology or physiology(GO:0019048)
0.0 0.4 GO:0007129 synapsis(GO:0007129)
0.0 0.3 GO:0010227 floral organ abscission(GO:0010227)
0.0 0.7 GO:0010114 response to red light(GO:0010114)
0.0 0.3 GO:0008360 regulation of cell shape(GO:0008360)
0.0 0.2 GO:2000104 negative regulation of DNA-dependent DNA replication(GO:2000104)
0.0 0.2 GO:0015937 coenzyme A biosynthetic process(GO:0015937)
0.0 0.1 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.0 GO:0032196 transposition(GO:0032196)
0.0 0.6 GO:0019722 calcium-mediated signaling(GO:0019722)
0.0 0.4 GO:0000122 negative regulation of transcription from RNA polymerase II promoter(GO:0000122)
0.0 0.3 GO:0051781 positive regulation of cell division(GO:0051781)
0.0 0.1 GO:0006513 protein monoubiquitination(GO:0006513)
0.0 0.2 GO:0001678 cellular glucose homeostasis(GO:0001678)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.4 GO:0030896 checkpoint clamp complex(GO:0030896)
0.1 2.3 GO:0009986 cell surface(GO:0009986)
0.1 0.5 GO:0001673 male germ cell nucleus(GO:0001673)
0.1 0.6 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.1 0.4 GO:0005851 eukaryotic translation initiation factor 2B complex(GO:0005851)
0.0 0.3 GO:0044545 NSL complex(GO:0044545)
0.0 0.3 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.0 0.5 GO:0000795 synaptonemal complex(GO:0000795)
0.0 0.7 GO:0031965 nuclear membrane(GO:0031965)
0.0 0.1 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.0 0.6 GO:0016324 apical plasma membrane(GO:0016324)
0.0 0.2 GO:0009360 DNA polymerase III complex(GO:0009360)
0.0 0.2 GO:0031261 DNA replication preinitiation complex(GO:0031261)
0.0 0.4 GO:0090404 growing cell tip(GO:0035838) cell tip(GO:0051286) pollen tube tip(GO:0090404)
0.0 0.2 GO:0005687 U4 snRNP(GO:0005687)
0.0 0.2 GO:0000778 condensed nuclear chromosome kinetochore(GO:0000778)
0.0 0.3 GO:0070062 extracellular organelle(GO:0043230) extracellular exosome(GO:0070062) extracellular vesicle(GO:1903561)
0.0 7.9 GO:0031225 anchored component of membrane(GO:0031225)
0.0 1.1 GO:0005764 lysosome(GO:0005764)
0.0 0.2 GO:0035619 root hair tip(GO:0035619)
0.0 0.9 GO:0010319 stromule(GO:0010319)
0.0 0.5 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)
0.0 0.2 GO:0005849 mRNA cleavage factor complex(GO:0005849)
0.0 0.2 GO:0045275 mitochondrial respiratory chain complex III(GO:0005750) respiratory chain complex III(GO:0045275)
0.0 0.2 GO:0005769 early endosome(GO:0005769)
0.0 0.2 GO:0005686 U2 snRNP(GO:0005686)
0.0 0.3 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 0.4 GO:0030173 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 3.5 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.5 1.4 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.5 2.3 GO:0005544 calcium-dependent phospholipid binding(GO:0005544)
0.4 1.3 GO:0000249 C-22 sterol desaturase activity(GO:0000249)
0.4 1.2 GO:0003861 3-isopropylmalate dehydratase activity(GO:0003861)
0.4 2.6 GO:0045431 flavonol synthase activity(GO:0045431)
0.3 2.4 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.3 2.3 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.3 0.8 GO:0050412 cinnamate beta-D-glucosyltransferase activity(GO:0050412)
0.3 1.6 GO:0004126 cytidine deaminase activity(GO:0004126)
0.2 0.8 GO:0016656 monodehydroascorbate reductase (NADH) activity(GO:0016656)
0.2 4.0 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.2 2.3 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.2 0.5 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.2 0.9 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.2 0.6 GO:0097617 annealing activity(GO:0097617)
0.1 0.4 GO:0000309 nicotinamide-nucleotide adenylyltransferase activity(GO:0000309)
0.1 1.0 GO:0001653 peptide receptor activity(GO:0001653)
0.1 0.5 GO:0070330 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.1 0.1 GO:0015141 succinate transmembrane transporter activity(GO:0015141)
0.1 0.3 GO:0004618 phosphoglycerate kinase activity(GO:0004618)
0.1 0.4 GO:0004839 ubiquitin activating enzyme activity(GO:0004839)
0.1 0.9 GO:0004806 triglyceride lipase activity(GO:0004806)
0.1 0.5 GO:0030976 thiamine pyrophosphate binding(GO:0030976)
0.1 1.1 GO:0008061 chitin binding(GO:0008061)
0.1 0.2 GO:0016418 dihydrolipoyllysine-residue acetyltransferase activity(GO:0004742) S-acetyltransferase activity(GO:0016418)
0.1 0.5 GO:0030332 cyclin binding(GO:0030332)
0.1 0.7 GO:0016744 transferase activity, transferring aldehyde or ketonic groups(GO:0016744)
0.1 0.3 GO:0002151 G-quadruplex RNA binding(GO:0002151)
0.1 0.3 GO:0008253 5'-nucleotidase activity(GO:0008253)
0.1 0.2 GO:0004140 dephospho-CoA kinase activity(GO:0004140)
0.1 1.6 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.1 0.4 GO:0016453 acetyl-CoA C-acetyltransferase activity(GO:0003985) C-acetyltransferase activity(GO:0016453)
0.1 0.4 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) lysophosphatidic acid acyltransferase activity(GO:0042171)
0.1 1.2 GO:0005504 fatty acid binding(GO:0005504)
0.1 0.4 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.1 0.2 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.1 0.2 GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity(GO:0008963)
0.1 0.5 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.1 0.4 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.1 1.3 GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645)
0.1 0.3 GO:0003680 AT DNA binding(GO:0003680)
0.1 0.6 GO:0000774 adenyl-nucleotide exchange factor activity(GO:0000774)
0.1 0.4 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 1.0 GO:0005199 structural constituent of cell wall(GO:0005199)
0.0 0.7 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.0 0.6 GO:0004708 MAP kinase kinase activity(GO:0004708)
0.0 0.2 GO:0004333 fumarate hydratase activity(GO:0004333)
0.0 0.5 GO:0031176 endo-1,4-beta-xylanase activity(GO:0031176)
0.0 0.5 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.0 0.4 GO:0048038 quinone binding(GO:0048038)
0.0 0.3 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.0 0.3 GO:0003917 DNA topoisomerase type I activity(GO:0003917)
0.0 1.8 GO:0051119 sugar transmembrane transporter activity(GO:0051119)
0.0 0.5 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 0.5 GO:0016308 1-phosphatidylinositol-4-phosphate 5-kinase activity(GO:0016308)
0.0 0.2 GO:0008430 selenium binding(GO:0008430)
0.0 0.2 GO:0016985 mannan endo-1,4-beta-mannosidase activity(GO:0016985)
0.0 2.2 GO:0004364 glutathione transferase activity(GO:0004364)
0.0 0.2 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.0 0.2 GO:0001046 core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047)
0.0 0.4 GO:0033926 glycopeptide alpha-N-acetylgalactosaminidase activity(GO:0033926)
0.0 0.2 GO:0004849 uridine kinase activity(GO:0004849)
0.0 0.5 GO:0015248 sterol transporter activity(GO:0015248)
0.0 0.2 GO:0005536 glucose binding(GO:0005536) mannokinase activity(GO:0019158)
0.0 0.4 GO:0003978 UDP-glucose 4-epimerase activity(GO:0003978)
0.0 0.2 GO:1904680 oligopeptide transmembrane transporter activity(GO:0035673) peptide transmembrane transporter activity(GO:1904680)
0.0 1.1 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.5 GO:0008353 RNA polymerase II carboxy-terminal domain kinase activity(GO:0008353)
0.0 0.5 GO:0004499 N,N-dimethylaniline monooxygenase activity(GO:0004499)
0.0 0.1 GO:0016882 cyclo-ligase activity(GO:0016882)
0.0 2.5 GO:0016709 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709)
0.0 0.1 GO:0008251 adenosine deaminase activity(GO:0004000) tRNA-specific adenosine deaminase activity(GO:0008251)
0.0 0.8 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.2 GO:0004045 aminoacyl-tRNA hydrolase activity(GO:0004045)
0.0 0.5 GO:0008810 cellulase activity(GO:0008810)
0.0 0.6 GO:0005179 hormone activity(GO:0005179)
0.0 1.2 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.1 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.5 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.6 GO:0016881 acid-amino acid ligase activity(GO:0016881)
0.0 0.1 GO:0009922 fatty acid elongase activity(GO:0009922)
0.0 0.0 GO:0008821 crossover junction endodeoxyribonuclease activity(GO:0008821)
0.0 0.2 GO:0000993 RNA polymerase II core binding(GO:0000993)
0.0 1.9 GO:0008234 cysteine-type peptidase activity(GO:0008234)
0.0 0.2 GO:0004032 alditol:NADP+ 1-oxidoreductase activity(GO:0004032)
0.0 0.2 GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity(GO:0034485)
0.0 0.3 GO:0034061 DNA polymerase activity(GO:0034061)
0.0 0.1 GO:0016721 superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721)
0.0 0.6 GO:0003993 acid phosphatase activity(GO:0003993)
0.0 0.4 GO:0008553 hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553)
0.0 0.1 GO:0042299 lupeol synthase activity(GO:0042299)
0.0 0.3 GO:0031593 polyubiquitin binding(GO:0031593)
0.0 0.1 GO:0010429 methyl-CpNpG binding(GO:0010428) methyl-CpNpN binding(GO:0010429)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.8 PID CXCR4 PATHWAY CXCR4-mediated signaling events
0.1 0.3 PID HIF2PATHWAY HIF-2-alpha transcription factor network
0.1 0.3 PID IL8 CXCR2 PATHWAY IL8- and CXCR2-mediated signaling events
0.0 0.3 PID ATM PATHWAY ATM pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.3 REACTOME SEMAPHORIN INTERACTIONS Genes involved in Semaphorin interactions
0.1 0.3 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.1 0.6 REACTOME INNATE IMMUNE SYSTEM Genes involved in Innate Immune System
0.1 0.5 REACTOME ASPARAGINE N LINKED GLYCOSYLATION Genes involved in Asparagine N-linked glycosylation
0.0 0.4 REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION Genes involved in Antigen processing: Ubiquitination & Proteasome degradation
0.0 0.3 REACTOME MEIOTIC RECOMBINATION Genes involved in Meiotic Recombination