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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G26620
Z-value: 1.58
Transcription factors associated with AT3G26620
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G26620
|
AT3G26620 | LOB domain-containing protein 23 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| LBD23 | arTal_v1_Chr3_+_9790628_9790628 | -0.52 | 5.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 2.85 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_+_2803833_2803957 Show fit | 2.59 |
AT5G08640.1
AT5G08640.2 |
flavonol synthase 1 |
|
| arTal_v1_Chr4_-_14830224_14830224 Show fit | 2.30 |
AT4G30290.1
|
xyloglucan endotransglucosylase/hydrolase 19 |
|
| arTal_v1_Chr1_-_27998821_27998821 Show fit | 2.30 |
AT1G74500.1
|
activation-tagged BRI1(brassinosteroid-insensitive 1)-suppressor 1 |
|
| arTal_v1_Chr4_-_14542565_14542565 Show fit | 2.10 |
AT4G29690.1
|
Alkaline-phosphatase-like family protein |
|
| arTal_v1_Chr2_-_12889931_12889931 Show fit | 1.99 |
AT2G30210.1
|
laccase 3 |
|
| arTal_v1_Chr1_-_10127098_10127098 Show fit | 1.87 |
AT1G29025.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr1_-_6241510_6241510 Show fit | 1.82 |
AT1G18140.1
|
laccase 1 |
|
| arTal_v1_Chr3_+_22129505_22129505 Show fit | 1.77 |
AT3G59900.1
|
auxin-regulated gene involved in organ size |
|
| arTal_v1_Chr4_+_14517393_14517393 Show fit | 1.58 |
AT4G29610.1
|
Cytidine/deoxycytidylate deaminase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G26620
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.9 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 2.8 | GO:0046341 | CDP-diacylglycerol biosynthetic process(GO:0016024) CDP-diacylglycerol metabolic process(GO:0046341) |
| 0.3 | 2.6 | GO:0016045 | detection of bacterium(GO:0016045) |
| 0.4 | 2.3 | GO:0010086 | embryonic root morphogenesis(GO:0010086) |
| 0.1 | 2.3 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.0 | 2.2 | GO:0006749 | glutathione metabolic process(GO:0006749) |
| 0.1 | 2.1 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.1 | 2.0 | GO:0034219 | carbohydrate transmembrane transport(GO:0034219) |
| 0.0 | 1.9 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.4 | 1.8 | GO:0046622 | positive regulation of organ growth(GO:0046622) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.9 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 2.3 | GO:0009986 | cell surface(GO:0009986) |
| 0.0 | 1.1 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 0.9 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 0.7 | GO:0031965 | nuclear membrane(GO:0031965) |
| 0.1 | 0.6 | GO:0001405 | presequence translocase-associated import motor(GO:0001405) |
| 0.0 | 0.6 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.1 | 0.5 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.0 | 0.5 | GO:0000795 | synaptonemal complex(GO:0000795) |
| 0.0 | 0.5 | GO:0000307 | cyclin-dependent protein kinase holoenzyme complex(GO:0000307) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 4.0 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.9 | 3.5 | GO:0036218 | dTTP diphosphatase activity(GO:0036218) |
| 0.4 | 2.6 | GO:0045431 | flavonol synthase activity(GO:0045431) |
| 0.0 | 2.5 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.3 | 2.4 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.5 | 2.3 | GO:0005544 | calcium-dependent phospholipid binding(GO:0005544) |
| 0.3 | 2.3 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.2 | 2.3 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 2.2 | GO:0004364 | glutathione transferase activity(GO:0004364) |
| 0.0 | 1.9 | GO:0008234 | cysteine-type peptidase activity(GO:0008234) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.3 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.3 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.0 | 0.3 | PID ATM PATHWAY | ATM pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.6 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.0 | 0.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.3 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.3 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.0 | 0.3 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |