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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G24520
Z-value: 1.63
Transcription factors associated with AT3G24520
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G24520
|
AT3G24520 | heat shock transcription factor C1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| HSFC1 | arTal_v1_Chr3_+_8941066_8941066 | -0.30 | 2.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_8918679_8918679 Show fit | 2.19 |
AT3G24500.2
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 2.18 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_+_11135624_11135634 Show fit | 2.18 |
AT2G26150.2
AT2G26150.1 AT2G26150.4 AT2G26150.3 |
heat shock transcription factor A2 |
|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 2.17 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr3_+_8918267_8918267 Show fit | 2.08 |
AT3G24500.1
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr1_-_27940309_27940369 Show fit | 2.07 |
AT1G74310.1
AT1G74310.2 |
heat shock protein 101 |
|
| arTal_v1_Chr2_-_8850111_8850111 Show fit | 2.04 |
AT2G20560.1
|
DNAJ heat shock family protein |
|
| arTal_v1_Chr3_-_3993886_3993886 Show fit | 1.98 |
AT3G12580.1
|
heat shock protein 70 |
|
| arTal_v1_Chr5_-_19693845_19693845 Show fit | 1.87 |
AT5G48570.1
|
FKBP-type peptidyl-prolyl cis-trans isomerase family protein |
|
| arTal_v1_Chr5_-_8444101_8444101 Show fit | 1.75 |
AT5G24660.1
|
response to low sulfur 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G24520
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 11.7 | GO:0006986 | response to unfolded protein(GO:0006986) |
| 0.1 | 5.2 | GO:0016145 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 4.8 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.1 | 3.7 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.3 | 2.9 | GO:0051131 | chaperone-mediated protein complex assembly(GO:0051131) |
| 0.2 | 2.9 | GO:0009704 | de-etiolation(GO:0009704) |
| 0.0 | 2.8 | GO:0010200 | response to chitin(GO:0010200) |
| 0.0 | 2.4 | GO:0034605 | cellular response to heat(GO:0034605) |
| 0.0 | 2.3 | GO:0051607 | defense response to virus(GO:0051607) |
| 0.4 | 2.1 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.9 | GO:0044217 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 3.1 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.0 | 2.7 | GO:0000785 | chromatin(GO:0000785) |
| 0.0 | 2.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 2.4 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.0 | 2.3 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 2.3 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.5 | 2.0 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
| 0.0 | 1.8 | GO:0005681 | spliceosomal complex(GO:0005681) |
| 0.1 | 1.5 | GO:0097346 | INO80-type complex(GO:0097346) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 5.4 | GO:0051787 | misfolded protein binding(GO:0051787) |
| 0.1 | 4.4 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 4.3 | GO:0000981 | RNA polymerase II transcription factor activity, sequence-specific DNA binding(GO:0000981) |
| 0.1 | 3.7 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.1 | 3.5 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.0 | 2.5 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 2.2 | GO:0051087 | chaperone binding(GO:0051087) |
| 0.7 | 2.0 | GO:0070678 | preprotein binding(GO:0070678) |
| 0.5 | 2.0 | GO:0004349 | glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.3 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.9 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.1 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.1 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.0 | 0.0 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.0 | PID AP1 PATHWAY | AP-1 transcription factor network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.1 | 0.6 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.0 | 0.2 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.0 | 0.0 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.0 | 0.0 | REACTOME PI METABOLISM | Genes involved in PI Metabolism |
| 0.0 | 0.0 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |