Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT3G24120
Z-value: 4.84
Transcription factors associated with AT3G24120
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G24120
|
AT3G24120 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G24120 | arTal_v1_Chr3_-_8708315_8708336 | 0.87 | 6.2e-05 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_-_17712290_17712330 Show fit | 12.11 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
| arTal_v1_Chr2_-_17710433_17710433 Show fit | 9.40 |
AT2G42530.1
|
cold regulated 15b |
|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 8.88 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr2_+_538250_538250 Show fit | 8.15 |
AT2G02120.1
|
Scorpion toxin-like knottin superfamily protein |
|
| arTal_v1_Chr5_+_21240717_21240717 Show fit | 7.79 |
AT5G52310.1
|
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A) |
|
| arTal_v1_Chr5_-_22712441_22712441 Show fit | 7.21 |
AT5G56080.1
|
nicotianamine synthase 2 |
|
| arTal_v1_Chr1_-_10289666_10289666 Show fit | 7.20 |
AT1G29395.1
|
COLD REGULATED 314 INNER MEMBRANE 1 |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 7.07 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr5_-_17199793_17199910 Show fit | 6.88 |
AT5G42900.1
AT5G42900.3 AT5G42900.2 |
cold regulated protein 27 |
|
| arTal_v1_Chr3_+_20612693_20612693 Show fit | 6.73 |
AT3G55580.1
|
Regulator of chromosome condensation (RCC1) family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G24120
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 54.5 | GO:0006412 | translation(GO:0006412) |
| 0.4 | 39.0 | GO:0009658 | chloroplast organization(GO:0009658) |
| 0.8 | 36.6 | GO:0072596 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.4 | 34.3 | GO:0018209 | peptidyl-serine phosphorylation(GO:0018105) peptidyl-serine modification(GO:0018209) |
| 0.5 | 30.0 | GO:0009631 | cold acclimation(GO:0009631) |
| 1.0 | 29.4 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.4 | 29.4 | GO:0016579 | protein deubiquitination(GO:0016579) |
| 0.4 | 28.6 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
| 0.3 | 28.1 | GO:0042254 | ribosome biogenesis(GO:0042254) |
| 0.0 | 28.1 | GO:0006468 | protein phosphorylation(GO:0006468) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 599.1 | GO:0005829 | cytosol(GO:0005829) |
| 0.1 | 256.7 | GO:0009536 | plastid(GO:0009536) |
| 0.4 | 220.6 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.1 | 127.6 | GO:0005886 | plasma membrane(GO:0005886) |
| 0.3 | 76.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.3 | 74.3 | GO:0005768 | endosome(GO:0005768) |
| 0.5 | 64.6 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.3 | 63.5 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.1 | 58.9 | GO:0005911 | cell-cell junction(GO:0005911) plasmodesma(GO:0009506) cell junction(GO:0030054) symplast(GO:0055044) |
| 0.6 | 37.3 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 160.2 | GO:0044822 | mRNA binding(GO:0003729) poly(A) RNA binding(GO:0044822) |
| 0.0 | 90.0 | GO:0005515 | protein binding(GO:0005515) |
| 0.4 | 79.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.1 | 74.5 | GO:0004672 | protein kinase activity(GO:0004672) |
| 0.1 | 57.4 | GO:0008270 | zinc ion binding(GO:0008270) |
| 0.6 | 47.9 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.3 | 42.3 | GO:0043531 | ADP binding(GO:0043531) |
| 1.2 | 41.0 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.3 | 34.9 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.5 | 31.6 | GO:0003727 | single-stranded RNA binding(GO:0003727) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.4 | 7.1 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.8 | 5.6 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 1.8 | 5.5 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.6 | 5.2 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 1.5 | 4.6 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 1.5 | 4.6 | PID LYMPH ANGIOGENESIS PATHWAY | VEGFR3 signaling in lymphatic endothelium |
| 0.4 | 3.8 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.8 | 3.3 | PID DELTA NP63 PATHWAY | Validated transcriptional targets of deltaNp63 isoforms |
| 0.6 | 3.0 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.7 | 2.6 | PID IL2 PI3K PATHWAY | IL2 signaling events mediated by PI3K |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 3.6 | 10.8 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
| 0.5 | 8.8 | REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX | Genes involved in Formation of the ternary complex, and subsequently, the 43S complex |
| 1.0 | 6.7 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 1.6 | 6.3 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 1.3 | 6.3 | REACTOME GLUCOSE TRANSPORT | Genes involved in Glucose transport |
| 0.9 | 5.5 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 1.4 | 5.4 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.6 | 5.2 | REACTOME PPARA ACTIVATES GENE EXPRESSION | Genes involved in PPARA Activates Gene Expression |
| 1.5 | 4.6 | REACTOME ARMS MEDIATED ACTIVATION | Genes involved in ARMS-mediated activation |
| 0.1 | 4.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |