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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G24050
Z-value: 1.53
Transcription factors associated with AT3G24050
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G24050
|
AT3G24050 | GATA transcription factor 1 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| GATA1 | arTal_v1_Chr3_+_8685739_8685739 | -0.25 | 3.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_+_20458952_20459006 Show fit | 2.86 |
AT1G54870.2
AT1G54870.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr1_-_2747936_2747967 Show fit | 2.53 |
AT1G08630.6
AT1G08630.7 AT1G08630.5 AT1G08630.2 |
threonine aldolase 1 |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 2.18 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr3_-_8064649_8064649 Show fit | 1.85 |
AT3G22800.1
|
Leucine-rich repeat (LRR) family protein |
|
| arTal_v1_Chr1_-_28549586_28549586 Show fit | 1.85 |
AT1G76080.1
|
chloroplastic drought-induced stress protein of 32 kD |
|
| arTal_v1_Chr1_-_27265806_27265806 Show fit | 1.72 |
AT1G72430.1
|
SAUR-like auxin-responsive protein family |
|
| arTal_v1_Chr1_-_2746526_2746526 Show fit | 1.65 |
AT1G08630.4
|
threonine aldolase 1 |
|
| arTal_v1_Chr1_-_2746740_2746740 Show fit | 1.63 |
AT1G08630.3
|
threonine aldolase 1 |
|
| arTal_v1_Chr1_-_2747243_2747243 Show fit | 1.61 |
AT1G08630.1
|
threonine aldolase 1 |
|
| arTal_v1_Chr2_-_108803_108829 Show fit | 1.52 |
AT2G01180.7
AT2G01180.2 AT2G01180.5 AT2G01180.1 AT2G01180.8 AT2G01180.4 AT2G01180.3 |
phosphatidic acid phosphatase 1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G24050
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 7.4 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.0 | 2.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.4 | 2.7 | GO:0009745 | sucrose mediated signaling(GO:0009745) |
| 0.0 | 2.7 | GO:0007267 | cell-cell signaling(GO:0007267) |
| 0.1 | 2.2 | GO:0000122 | negative regulation of transcription from RNA polymerase II promoter(GO:0000122) |
| 0.5 | 2.1 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.1 | 2.1 | GO:0042761 | very long-chain fatty acid biosynthetic process(GO:0042761) |
| 0.1 | 2.0 | GO:0006826 | iron ion transport(GO:0006826) |
| 0.0 | 1.9 | GO:0009834 | plant-type secondary cell wall biogenesis(GO:0009834) |
| 0.0 | 1.9 | GO:0045454 | cell redox homeostasis(GO:0045454) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.7 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 2.3 | GO:0010008 | endosome membrane(GO:0010008) |
| 0.0 | 1.6 | GO:0005811 | lipid particle(GO:0005811) |
| 0.1 | 1.3 | GO:0005801 | cis-Golgi network(GO:0005801) |
| 0.0 | 1.3 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 1.3 | GO:0042025 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.2 | 1.1 | GO:0034991 | nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991) |
| 0.1 | 0.9 | GO:0009531 | secondary cell wall(GO:0009531) |
| 0.0 | 0.6 | GO:0019773 | proteasome core complex, alpha-subunit complex(GO:0019773) |
| 0.0 | 0.6 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.5 | 7.4 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.0 | 5.2 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.2 | 3.2 | GO:0008106 | alcohol dehydrogenase (NADP+) activity(GO:0008106) |
| 0.2 | 2.7 | GO:0008195 | phosphatidate phosphatase activity(GO:0008195) |
| 0.0 | 2.2 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
| 0.0 | 2.1 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.1 | 2.0 | GO:0005381 | iron ion transmembrane transporter activity(GO:0005381) |
| 0.0 | 1.8 | GO:0016597 | amino acid binding(GO:0016597) |
| 0.1 | 1.4 | GO:0009044 | xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556) |
| 0.1 | 1.3 | GO:0009979 | 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.2 | PID EPHA2 FWD PATHWAY | EPHA2 forward signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.1 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |