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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G23220
Z-value: 1.04
Transcription factors associated with AT3G23220
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G23220
|
AT3G23220 | Integrase-type DNA-binding superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ESE1 | arTal_v1_Chr3_+_8287942_8287942 | 0.14 | 6.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_7906521_7906521 Show fit | 1.97 |
AT3G22370.1
|
alternative oxidase 1A |
|
| arTal_v1_Chr3_-_18373147_18373147 Show fit | 1.95 |
AT3G49570.1
|
response to low sulfur 3 |
|
| arTal_v1_Chr1_+_23953099_23953099 Show fit | 1.92 |
AT1G64500.1
|
Glutaredoxin family protein |
|
| arTal_v1_Chr1_-_26796529_26796532 Show fit | 1.66 |
AT1G71030.1
AT1G71030.2 |
MYB-like 2 |
|
| arTal_v1_Chr5_-_8444101_8444101 Show fit | 1.60 |
AT5G24660.1
|
response to low sulfur 2 |
|
| arTal_v1_Chr3_+_9758797_9758797 Show fit | 1.56 |
AT3G26580.1
|
Tetratricopeptide repeat (TPR)-like superfamily protein |
|
| arTal_v1_Chr1_-_4066344_4066344 Show fit | 1.51 |
AT1G12030.1
|
phosphoenolpyruvate carboxylase, putative (DUF506) |
|
| arTal_v1_Chr5_-_14123362_14123362 Show fit | 1.47 |
AT5G35970.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr5_+_20891163_20891163 Show fit | 1.42 |
AT5G51440.1
|
HSP20-like chaperones superfamily protein |
|
| arTal_v1_Chr1_-_25445357_25445357 Show fit | 1.30 |
AT1G67860.1
|
transmembrane protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G23220
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.8 | GO:0048363 | mucilage pectin metabolic process(GO:0048363) |
| 0.2 | 2.8 | GO:0010100 | negative regulation of photomorphogenesis(GO:0010100) |
| 0.4 | 2.2 | GO:0010362 | negative regulation of anion channel activity(GO:0010360) regulation of anion channel activity by blue light(GO:0010361) negative regulation of anion channel activity by blue light(GO:0010362) negative regulation of transporter activity(GO:0032410) negative regulation of ion transmembrane transporter activity(GO:0032413) negative regulation of transmembrane transport(GO:0034763) negative regulation of ion transmembrane transport(GO:0034766) negative regulation of anion transport(GO:1903792) negative regulation of anion transmembrane transport(GO:1903960) |
| 0.2 | 2.2 | GO:0016123 | xanthophyll biosynthetic process(GO:0016123) |
| 0.1 | 1.9 | GO:0009704 | de-etiolation(GO:0009704) |
| 0.1 | 1.9 | GO:0051017 | actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572) |
| 0.1 | 1.9 | GO:0010207 | photosystem II assembly(GO:0010207) |
| 0.1 | 1.9 | GO:0098869 | cellular oxidant detoxification(GO:0098869) |
| 0.2 | 1.8 | GO:0031930 | mitochondria-nucleus signaling pathway(GO:0031930) |
| 0.2 | 1.7 | GO:0010023 | proanthocyanidin biosynthetic process(GO:0010023) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.1 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 5.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 3.7 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 2.3 | GO:0009898 | cytoplasmic side of plasma membrane(GO:0009898) |
| 0.2 | 1.9 | GO:0005884 | actin filament(GO:0005884) |
| 0.0 | 1.8 | GO:0009535 | chloroplast thylakoid membrane(GO:0009535) |
| 0.5 | 1.6 | GO:0005652 | nuclear lamina(GO:0005652) |
| 0.1 | 1.1 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.1 | 1.1 | GO:0032300 | mismatch repair complex(GO:0032300) |
| 0.0 | 1.0 | GO:0016607 | nuclear speck(GO:0016607) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 7.2 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.2 | 2.2 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
| 0.2 | 2.0 | GO:0009916 | alternative oxidase activity(GO:0009916) |
| 0.0 | 1.9 | GO:0015035 | protein disulfide oxidoreductase activity(GO:0015035) |
| 0.0 | 1.9 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 1.8 | GO:0051082 | unfolded protein binding(GO:0051082) |
| 0.0 | 1.5 | GO:0004222 | metalloendopeptidase activity(GO:0004222) |
| 0.0 | 1.4 | GO:0071949 | FAD binding(GO:0071949) |
| 0.2 | 1.3 | GO:0016621 | cinnamoyl-CoA reductase activity(GO:0016621) |
| 0.1 | 1.3 | GO:0032453 | histone demethylase activity (H3-K4 specific)(GO:0032453) histone demethylase activity (H3-trimethyl-K4 specific)(GO:0034647) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.8 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.0 | 0.2 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.0 | PID NFAT TFPATHWAY | Calcineurin-regulated NFAT-dependent transcription in lymphocytes |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 2.0 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 1.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.3 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.0 | 0.2 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.0 | REACTOME APOPTOSIS INDUCED DNA FRAGMENTATION | Genes involved in Apoptosis induced DNA fragmentation |