Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT3G20770
Z-value: 1.64
Transcription factors associated with AT3G20770
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G20770
|
AT3G20770 | Ethylene insensitive 3 family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| EIN3 | arTal_v1_Chr3_-_7263384_7263384 | 0.01 | 9.8e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_-_18375784_18375784 Show fit | 3.68 |
AT3G49580.3
AT3G49580.2 |
response to low sulfur 1 |
|
| arTal_v1_Chr3_-_18375940_18375940 Show fit | 3.56 |
AT3G49580.1
|
response to low sulfur 1 |
|
| arTal_v1_Chr5_-_9164816_9164884 Show fit | 3.30 |
AT5G26220.2
AT5G26220.1 |
ChaC-like family protein |
|
| arTal_v1_Chr1_+_8544248_8544308 Show fit | 3.16 |
AT1G24148.1
AT1G24148.2 |
hypothetical protein |
|
| arTal_v1_Chr3_+_8703220_8703220 Show fit | 3.12 |
AT3G24100.1
|
Uncharacterized protein family SERF |
|
| arTal_v1_Chr3_-_18373147_18373147 Show fit | 2.74 |
AT3G49570.1
|
response to low sulfur 3 |
|
| arTal_v1_Chr2_-_14541617_14541617 Show fit | 2.59 |
AT2G34500.1
|
cytochrome P450, family 710, subfamily A, polypeptide 1 |
|
| arTal_v1_Chr5_+_26447642_26447648 Show fit | 2.49 |
AT5G66170.3
AT5G66170.2 AT5G66170.1 |
sulfurtransferase 18 |
|
| arTal_v1_Chr1_-_4066344_4066344 Show fit | 2.36 |
AT1G12030.1
|
phosphoenolpyruvate carboxylase, putative (DUF506) |
|
| arTal_v1_Chr3_+_17905725_17905725 Show fit | 2.20 |
AT3G48350.2
AT3G48350.1 |
Cysteine proteinases superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G20770
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.2 | 8.5 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.6 | 3.0 | GO:0019419 | sulfate reduction(GO:0019419) |
| 0.6 | 2.9 | GO:1902418 | (+)-abscisic acid D-glucopyranosyl ester transmembrane transport(GO:1902418) |
| 0.5 | 2.9 | GO:0070982 | cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982) |
| 0.1 | 2.9 | GO:0098869 | cellular oxidant detoxification(GO:0098869) |
| 0.6 | 2.8 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
| 0.1 | 2.8 | GO:0033238 | regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238) |
| 0.1 | 2.6 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.0 | 2.3 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.4 | 2.2 | GO:0035864 | response to potassium ion(GO:0035864) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.2 | GO:0005764 | lysosome(GO:0005764) |
| 0.0 | 2.5 | GO:0000325 | plant-type vacuole(GO:0000325) |
| 0.1 | 2.1 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.9 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 1.7 | GO:0000792 | heterochromatin(GO:0000792) |
| 0.4 | 1.3 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.0 | 1.3 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 1.1 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 0.7 | GO:0042644 | chloroplast nucleoid(GO:0042644) |
| 0.0 | 0.5 | GO:0032300 | mismatch repair complex(GO:0032300) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.0 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.7 | 3.3 | GO:0042085 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
| 0.7 | 3.0 | GO:0009973 | adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741) |
| 0.6 | 2.9 | GO:1902417 | (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417) |
| 0.4 | 2.9 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
| 0.0 | 2.8 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.9 | 2.6 | GO:0000249 | C-22 sterol desaturase activity(GO:0000249) |
| 0.4 | 2.5 | GO:0004792 | thiosulfate sulfurtransferase activity(GO:0004792) |
| 0.0 | 2.5 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.4 | 2.3 | GO:0004848 | ureidoglycolate hydrolase activity(GO:0004848) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.3 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.0 | 0.3 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.0 | 0.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |