Project

GSE130291:vernalization in Arabidopsis thaliana

Navigation
Downloads

Results for AT3G20770

Z-value: 1.64

Transcription factors associated with AT3G20770

Gene Symbol Gene ID Gene Info
AT3G20770
AT3G20770 Ethylene insensitive 3 family protein

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
EIN3arTal_v1_Chr3_-_7263384_72633840.019.8e-01Click!

Activity profile of AT3G20770 motif

Sorted Z-values of AT3G20770 motif

Top targets:  

Promoter Log-likelihood Transcript Gene Gene Info
Chr3_-_18375784 3.68 AT3G49580.3
AT3G49580.2
LSU1
response to low sulfur 1
Chr3_-_18375940 3.56 AT3G49580.1
LSU1
response to low sulfur 1
Chr5_-_9164816 3.30 AT5G26220.2
AT5G26220.1
AT5G26220
ChaC-like family protein
Chr1_+_8544248 3.16 AT1G24148.1
AT1G24148.2
AT1G24148
hypothetical protein
Chr3_+_8703220 3.12 AT3G24100.1
AT3G24100
Uncharacterized protein family SERF
Chr3_-_18373147 2.74 AT3G49570.1
LSU3
response to low sulfur 3
Chr2_-_14541617 2.59 AT2G34500.1
CYP710A1
cytochrome P450, family 710, subfamily A, polypeptide 1
Chr5_+_26447642 2.49 AT5G66170.3
AT5G66170.2
AT5G66170.1
STR18
sulfurtransferase 18
Chr1_-_4066344 2.36 AT1G12030.1
AT1G12030
phosphoenolpyruvate carboxylase, putative (DUF506)
Chr3_+_17905725 2.20 AT3G48350.2
AT3G48350.1
CEP3
Cysteine proteinases superfamily protein
Chr3_+_1549446 2.19 AT3G05400.1
AT3G05400
Major facilitator superfamily protein
Chr3_+_1549667 2.19 AT3G05400.2
AT3G05400
Major facilitator superfamily protein
Chr1_-_2287730 2.05 AT1G07440.2
AT1G07440.1
AT1G07440
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_+_2324878 1.95 AT4G04610.1
APR1
APS reductase 1
Chr5_-_22232949 1.79 AT5G54720.1
AT5G54720
Ankyrin repeat family protein
Chr5_+_22893151 1.65 AT5G56540.1
AGP14
arabinogalactan protein 14
Chr1_+_24472873 1.61 AT1G65800.1
AT1G65800.2
RK2
receptor kinase 2
Chr5_+_448092 1.60 AT5G02230.1
AT5G02230.3
AT5G02230.2
AT5G02230
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr5_-_19172956 1.57 AT5G47220.1
ERF2
ethylene responsive element binding factor 2
Chr4_-_12393982 1.53 AT4G23810.1
WRKY53
WRKY family transcription factor
Chr5_-_3993767 1.53 AT5G12340.2
AT5G12340
DUF4228 domain protein
Chr4_+_14517393 1.53 AT4G29610.1
AT4G29610
Cytidine/deoxycytidylate deaminase family protein
Chr2_-_14146471 1.51 AT2G33380.2
AT2G33380.1
RD20
Caleosin-related family protein
Chr1_+_28032562 1.50 AT1G74640.1
AT1G74640
alpha/beta-Hydrolases superfamily protein
Chr3_+_22216540 1.44 AT3G60140.2
AT3G60140.1
DIN2
Glycosyl hydrolase superfamily protein
Chr4_-_1559412 1.42 AT4G03510.3
AT4G03510.4
AT4G03510.1
AT4G03510.2
RMA1
RING membrane-anchor 1
Chr3_+_957112 1.42 AT3G03780.1
AT3G03780.3
MS2
methionine synthase 2
Chr2_+_8094614 1.41 AT2G18680.1
AT2G18680
transmembrane protein
Chr5_+_84474 1.40 AT5G01210.1
AT5G01210
HXXXD-type acyl-transferase family protein
Chr3_+_956862 1.37 AT3G03780.2
MS2
methionine synthase 2
Chr4_+_16277282 1.36 AT4G33960.1
AT4G33960
hypothetical protein
Chr3_-_16448844 1.33 AT3G44990.1
XTH31
xyloglucan endo-transglycosylase-related 8
Chr1_-_7534927 1.33 AT1G21520.1
AT1G21520
hypothetical protein
Chr5_-_753657 1.33 AT5G03170.1
FLA11
FASCICLIN-like arabinogalactan-protein 11
Chr2_+_15514923 1.32 AT2G36950.1
AT2G36950
Heavy metal transport/detoxification superfamily protein
Chr5_+_20415764 1.32 AT5G50160.1
AT5G50160.2
FRO8
ferric reduction oxidase 8
Chr4_+_2445775 1.32 AT4G04830.1
AT4G04830.2
MSRB5
methionine sulfoxide reductase B5
Chr1_-_8556555 1.31 AT1G24160.2
AT1G24160
triadin
Chr3_+_9406669 1.31 AT3G25770.1
AOC2
allene oxide cyclase 2
Chr3_+_604785 1.31 AT3G02790.1
AT3G02790
zinc finger (C2H2 type) family protein
Chr1_-_13698739 1.31 AT1G36370.1
SHM7
serine hydroxymethyltransferase 7
Chr1_+_25957823 1.30 AT1G69040.1
ACR4
ACT domain repeat 4
Chr3_-_15953346 1.30 AT3G44260.1
CAF1a
Polynucleotidyl transferase, ribonuclease H-like superfamily protein
Chr1_-_8556750 1.29 AT1G24160.1
AT1G24160
triadin
Chr5_+_25679425 1.29 AT5G64190.2
AT5G64190.1
AT5G64190
neuronal PAS domain protein
Chr5_-_3993610 1.27 AT5G12340.1
AT5G12340
DUF4228 domain protein
Chr1_+_1882907 1.26 AT1G06160.1
ORA59
octadecanoid-responsive AP2/ERF 59
Chr1_+_25957567 1.23 AT1G69040.2
ACR4
ACT domain repeat 4
Chr5_-_8444101 1.22 AT5G24660.1
LSU2
response to low sulfur 2
Chr3_-_1457150 1.20 AT3G05160.2
AT3G05160.1
AT3G05160.3
AT3G05160
Major facilitator superfamily protein
Chr2_+_2015624 1.20 AT2G05510.1
AT2G05510.3
AT2G05510.4
AT2G05510.2
AT2G05510.6
AT2G05510.5
AT2G05510
Glycine-rich protein family
Chr2_+_15050677 1.17 AT2G35820.1
AT2G35820
ureidoglycolate hydrolase
Chr3_-_18224885 1.16 AT3G49160.2
AT3G49160.3
AT3G49160.1
AT3G49160
pyruvate kinase family protein
Chr5_+_15131289 1.15 AT5G37980.1
AT5G37980
Zinc-binding dehydrogenase family protein
Chr3_+_8743113 1.15 AT3G24190.1
AT3G24190
Protein kinase superfamily protein
Chr2_+_14604712 1.14 AT2G34660.3
ABCC2
multidrug resistance-associated protein 2
Chr2_+_15050498 1.13 AT2G35820.2
AT2G35820
ureidoglycolate hydrolase
Chr2_-_6710856 1.13 AT2G15390.1
FUT4
fucosyltransferase 4
Chr5_-_25804980 1.10 AT5G64550.1
AT5G64550
loricrin-like protein
Chr1_-_23104756 1.08 AT1G62420.1
AT1G62420
DUF506 family protein (DUF506)
Chr5_-_19693845 1.08 AT5G48570.1
AT5G48570
FKBP-type peptidyl-prolyl cis-trans isomerase family protein
Chr1_+_5596633 1.08 AT1G16370.1
OCT6
organic cation/carnitine transporter 6
Chr5_+_9628990 1.07 AT5G27320.1
GID1C
alpha/beta-Hydrolases superfamily protein
Chr2_+_14602700 1.04 AT2G34660.1
ABCC2
multidrug resistance-associated protein 2
Chr2_-_11685342 1.04 AT2G27310.1
AT2G27310
F-box family protein
Chr1_+_29329329 1.04 AT1G78000.5
AT1G78000.1
SULTR1%3B2
sulfate transporter 1;2
Chr1_+_19520603 1.04 AT1G52410.2
AT1G52410.1
TSA1
TSK-associating protein 1
Chr2_+_14602470 1.04 AT2G34660.2
ABCC2
multidrug resistance-associated protein 2
Chr3_+_3694956 1.04 AT3G11690.1
AT3G11690
hypothetical protein
Chr1_+_29329591 1.03 AT1G78000.2
AT1G78000.6
SULTR1%3B2
sulfate transporter 1;2
Chr1_+_29330225 1.03 AT1G78000.7
SULTR1%3B2
sulfate transporter 1;2
Chr1_-_17285749 1.02 AT1G47128.1
RD21A
Granulin repeat cysteine protease family protein
Chr2_-_6711156 1.01 AT2G15390.2
FUT4
fucosyltransferase 4
Chr4_-_11659105 1.01 AT4G21990.1
AT4G21990.2
APR3
APS reductase 3
Chr5_+_24707445 1.01 AT5G61440.2
AT5G61440.1
ACHT5
atypical CYS HIS rich thioredoxin 5
Chr3_-_17441242 1.00 AT3G47340.3
AT3G47340.2
ASN1
glutamine-dependent asparagine synthase 1
Chr5_+_24915807 1.00 AT5G62020.1
HSFB2A
heat shock transcription factor B2A
Chr1_+_23200591 0.98 AT1G62660.4
AT1G62660
Glycosyl hydrolases family 32 protein
Chr5_-_7620278 0.98 AT5G22800.2
EMB1030
Alanyl-tRNA synthetase, class IIc
Chr5_-_7620079 0.98 AT5G22800.1
EMB1030
Alanyl-tRNA synthetase, class IIc
Chr1_+_23199612 0.97 AT1G62660.2
AT1G62660.1
AT1G62660.3
AT1G62660
Glycosyl hydrolases family 32 protein
Chr3_-_17441431 0.97 AT3G47340.1
ASN1
glutamine-dependent asparagine synthase 1
Chr1_+_29328103 0.95 AT1G78000.4
SULTR1%3B2
sulfate transporter 1;2
Chr3_-_17440176 0.94 AT3G47340.4
ASN1
glutamine-dependent asparagine synthase 1
Chr2_-_7972396 0.93 AT2G18350.1
HB24
homeobox protein 24
Chr5_-_22546801 0.93 AT5G55670.2
AT5G55670
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_+_575382 0.93 AT5G02560.2
HTA12
histone H2A 12
Chr1_+_29327515 0.93 AT1G78000.3
SULTR1%3B2
sulfate transporter 1;2
Chr3_-_7213401 0.92 AT3G20640.2
AT3G20640.4
AT3G20640.3
AT3G20640.1
AT3G20640
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr3_-_17902872 0.91 AT3G48344.1
AT3G48344
hypothetical protein
Chr4_-_8100260 0.91 AT4G14030.2
AT4G14030.1
SBP1
selenium-binding protein 1
Chr4_-_17139777 0.90 AT4G36220.1
FAH1
ferulic acid 5-hydroxylase 1
Chr3_+_1246669 0.89 AT3G04605.1
MUG1

Chr1_-_3592580 0.89 AT1G10770.1
AT1G10770
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_+_3745774 0.88 AT1G11180.3
AT1G11180.1
AT1G11180.2
SCAMP2
Secretory carrier membrane protein (SCAMP) family protein
Chr1_-_21474602 0.88 AT1G58037.1
AT1G58037.2
AT1G58037
Cysteine/Histidine-rich C1 domain family protein
Chr1_+_2873465 0.86 AT1G08930.2
ERD6
Major facilitator superfamily protein
Chr4_+_8022497 0.86 AT4G13860.1
AT4G13860
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr1_+_2873300 0.86 AT1G08930.1
ERD6
Major facilitator superfamily protein
Chr4_+_8022669 0.85 AT4G13860.2
AT4G13860
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr5_-_21092410 0.84 AT5G51890.1
AT5G51890
Peroxidase superfamily protein
Chr5_-_22547062 0.83 AT5G55670.1
AT5G55670
RNA-binding (RRM/RBD/RNP motifs) family protein
Chr4_+_15608905 0.82 AT4G32330.3
AT4G32330.1
AT4G32330.2
AT4G32330.4
AT4G32330
TPX2 (targeting protein for Xklp2) protein family
Chr5_-_8707885 0.82 AT5G25190.1
ESE3
Integrase-type DNA-binding superfamily protein
Chr1_-_18521781 0.82 AT1G50020.1
AT1G50020
tubulin alpha-6 chain
Chr4_+_11561123 0.81 AT4G21760.2
AT4G21760.1
BGLU47
beta-glucosidase 47
Chr4_-_3950602 0.80 AT4G06700.1
AT4G06700

Chr3_-_22676851 0.80 AT3G61260.1
AT3G61260
Remorin family protein
Chr5_+_575225 0.78 AT5G02560.1
HTA12
histone H2A 12
Chr1_+_4760957 0.78 AT1G13930.1
AT1G13930.2
AT1G13930.3
AT1G13930
oleosin-B3-like protein
Chr4_-_17492771 0.78 AT4G37140.2
AT4G37140.1
MEE69
alpha/beta-Hydrolases superfamily protein
Chr2_+_13791857 0.77 AT2G32487.2
AT2G32487.3
AT2G32487.4
AT2G32487.1
AT2G32487
hypothetical protein
Chr4_+_8875656 0.76 AT4G15545.1
AT4G15545
PH-response transcription factor
Chr4_+_17201922 0.76 AT4G36410.1
UBC17
ubiquitin-conjugating enzyme 17
Chr2_+_13824663 0.76 AT2G32560.1
AT2G32560.2
AT2G32560
F-box family protein
Chr1_+_3948714 0.76 AT1G11710.1
AT1G11710.2
AT1G11710
Pentatricopeptide repeat (PPR) superfamily protein
Chr1_+_4028595 0.74 AT1G11930.2
AT1G11930.1
AT1G11930
Putative pyridoxal phosphate-dependent enzyme, YBL036C type
Chr5_-_23312920 0.74 AT5G57567.2
AT5G57567
GCK domain protein
Chr2_-_15084559 0.74 AT2G35930.1
PUB23
plant U-box 23
Chr5_-_3971452 0.73 AT5G12270.1
AT5G12270
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_+_9605484 0.72 AT5G27270.2
AT5G27270.3
AT5G27270.1
AT5G27270.4
AT5G27270.5
EMB976
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr2_-_12632538 0.72 AT2G29490.1
GSTU1
glutathione S-transferase TAU 1
Chr1_-_29740179 0.71 AT1G79050.2
AT1G79050.1
RECA1
recA DNA recombination family protein
Chr2_+_13647699 0.71 AT2G32100.1
OFP16
ovate family protein 16
Chr1_-_19690589 0.71 AT1G52880.1
NAM
NAC (No Apical Meristem) domain transcriptional regulator superfamily protein
Chr3_-_18559326 0.70 AT3G50060.1
MYB77
myb domain protein 77
Chr5_-_17888530 0.70 AT5G44400.1
AT5G44400
FAD-binding Berberine family protein
Chr5_+_9303939 0.70 AT5G26720.1
AT5G26720
ubiquitin carboxyl-terminal hydrolase-like protein
Chr1_-_12187423 0.70 AT1G33607.1
AT1G33607
Defensin-like (DEFL) family protein
Chr2_+_19508929 0.70 AT2G47550.1
AT2G47550
Plant invertase/pectin methylesterase inhibitor superfamily
Chr1_+_7065494 0.69 AT1G20390.1
AT1G20390

Chr3_+_22129505 0.67 AT3G59900.1
ARGOS
auxin-regulated gene involved in organ size
Chr2_+_3514668 0.67 AT2G07680.2
AT2G07680.3
AT2G07680.4
AT2G07680.1
AT2G07680.5
ABCC13
multidrug resistance-associated protein 11
Chr4_-_9144583 0.67 AT4G16146.1
AT4G16146
cAMP-regulated phosphoprotein 19-related protein
Chr5_+_6424779 0.66 AT5G19140.3
AILP1
aluminum induced protein with YGL and LRDR motifs
Chr2_-_9906032 0.66 AT2G23290.1
MYB70
myb domain protein 70
Chr5_-_20773194 0.66 AT5G51090.1
AT5G51090
hypothetical protein
Chr1_-_25779161 0.65 AT1G68660.2
AT1G68660.1
AT1G68660
Ribosomal protein L12/ ATP-dependent Clp protease adaptor protein ClpS family protein
Chr1_+_29567106 0.65 AT1G78600.2
LZF1
light-regulated zinc finger protein 1
Chr1_-_29191079 0.65 AT1G77670.1
AT1G77670
Pyridoxal phosphate (PLP)-dependent transferases superfamily protein
Chr2_+_11860218 0.65 AT2G27830.1
AT2G27830
hypothetical protein
Chr5_-_21453980 0.64 AT5G52900.1
MAKR6
membrane-associated kinase regulator
Chr5_+_21981902 0.63 AT5G54160.1
OMT1
O-methyltransferase 1
Chr3_+_21238223 0.62 AT3G57400.1
AT3G57400
transmembrane protein
Chr1_+_29566863 0.62 AT1G78600.1
LZF1
light-regulated zinc finger protein 1
Chr5_+_6423153 0.62 AT5G19140.2
AT5G19140.1
AILP1
aluminum induced protein with YGL and LRDR motifs
Chr1_-_11668690 0.62 AT1G32350.1
AT1G32350.2
AOX1D
alternative oxidase 1D
Chr3_+_10694444 0.61 AT3G28540.2
AT3G28540
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_916509 0.61 AT4G02075.2
AT4G02075.3
AT4G02075.1
PIT1
RING/FYVE/PHD zinc finger superfamily protein
Chr5_-_7903899 0.60 AT5G23440.1
FTRA1
ferredoxin/thioredoxin reductase subunit A (variable subunit) 1
Chr3_-_9654730 0.59 AT3G26350.1
AT3G26350
proline-rich receptor-like kinase
Chr4_+_17517743 0.59 AT4G37235.1
AT4G37235
Uncharacterized protein family (UPF0497)
Chr3_+_11278375 0.59 AT3G29370.1
P1R3
hypothetical protein
Chr3_+_21011008 0.58 AT3G56720.6
AT3G56720.3
AT3G56720.7
AT3G56720.5
AT3G56720.2
AT3G56720
pre-mRNA-splicing factor
Chr1_-_9411368 0.57 AT1G27100.1
AT1G27100
Actin cross-linking protein
Chr1_+_9979478 0.56 AT1G28420.1
HB-1
homeobox-1
Chr4_+_14522569 0.55 AT4G29630.1
AT4G29630
Cytidine/deoxycytidylate deaminase family protein
Chr5_-_15514305 0.55 AT5G38740.1
AGL77
AGAMOUS-like 77
Chr1_+_13545965 0.55 AT1G36180.2
AT1G36180.3
AT1G36180.1
ACC2
acetyl-CoA carboxylase 2
Chr3_+_2671052 0.55 AT3G08800.2
AT3G08800.1
AT3G08800.3
SIEL
ARM repeat superfamily protein
Chr3_-_23328789 0.54 AT3G63140.1
CSP41A
chloroplast stem-loop binding protein of 41 kDa
Chr5_-_6974962 0.54 AT5G20620.1
AT5G20620.2
UBQ4
ubiquitin 4
Chr4_+_7945683 0.54 AT4G13660.1
PRR2
pinoresinol reductase 2
Chr5_-_7128359 0.54 AT5G20980.2
AT5G20980.1
MS3
methionine synthase 3
Chr3_+_21714911 0.54 AT3G58710.2
AT3G58710.1
WRKY69
WRKY DNA-binding protein 69
Chr5_-_7735566 0.53 AT5G23050.1
AT5G23050.2
AAE17
acyl-activating enzyme 17
Chr3_+_5950190 0.53 AT3G17380.1
AT3G17380
TRAF-like family protein
Chr5_-_8122784 0.53 AT5G24030.2
AT5G24030.1
SLAH3
SLAC1 homologue 3
Chr3_+_10694175 0.53 AT3G28540.1
AT3G28540
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr3_+_19083980 0.52 AT3G51420.1
SSL4
strictosidine synthase-like 4
Chr5_+_2396708 0.52 AT5G07572.1
AT5G07572
hypothetical protein
Chr2_+_17343360 0.52 AT2G41590.1
AT2G41590
Ta11-like non-LTR retrotransposon
Chr5_+_10129022 0.51 AT5G28145.1
AT5G28145

Chr4_+_7945906 0.51 AT4G13660.2
PRR2
pinoresinol reductase 2
Chr1_+_7963813 0.51 AT1G22540.1
AT1G22540
Major facilitator superfamily protein
Chr3_+_21010632 0.51 AT3G56720.1
AT3G56720.4
AT3G56720
pre-mRNA-splicing factor
Chr4_+_17540490 0.50 AT4G37260.1
MYB73
myb domain protein 73
Chr1_+_6824246 0.50 AT1G19740.1
AT1G19740
ATP-dependent protease La (LON) domain protein
Chr5_-_63929 0.50 AT5G01180.3
AT5G01180.1
AT5G01180.2
PTR5
peptide transporter 5
Chr4_-_13729002 0.50 AT4G27450.1
AT4G27450
aluminum induced protein with YGL and LRDR motifs
Chr1_-_12358966 0.50 AT1G34000.1
OHP2
one-helix protein 2
Chr5_+_21226721 0.50 AT5G52280.1
AT5G52280
Myosin heavy chain-related protein
Chr5_+_21048191 0.50 AT5G51800.1
AT5G51800
Protein kinase superfamily protein
Chr1_-_27407540 0.50 AT1G72830.2
NF-YA3
nuclear factor Y, subunit A3
Chr2_-_7575932 0.49 AT2G17442.3
AT2G17442.7
AT2G17442.8
AT2G17442.6
AT2G17442.4
AT2G17442.5
AT2G17442.2
AT2G17442.1
AT2G17442
hypothetical protein
Chr1_+_12917070 0.49 AT1G35230.1
AGP5
arabinogalactan protein 5
Chr1_-_3038408 0.49 AT1G09415.1
NIMIN-3
NIM1-interacting 3
Chr4_+_8538586 0.48 AT4G14930.2
AT4G14930.1
AT4G14930
Survival protein SurE-like phosphatase/nucleotidase
Chr1_-_5155563 0.48 AT1G14940.1
AT1G14940.2
AT1G14940
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr4_+_4732198 0.47 AT4G07932.1
AT4G07932
hypothetical protein
Chr3_-_18525792 0.47 AT3G49960.1
AT3G49960
Peroxidase superfamily protein
Chr4_+_16591179 0.47 AT4G34770.1
AT4G34770
SAUR-like auxin-responsive protein family
Chr5_+_6963338 0.46 AT5G20590.1
AT5G20590.2
TBL5
TRICHOME BIREFRINGENCE-LIKE 5
Chr3_+_4517496 0.46 AT3G13760.1
AT3G13760
Cysteine/Histidine-rich C1 domain family protein
Chr3_-_11785377 0.46 AT3G30160.1
AT3G30160
transmembrane protein
Chr3_+_18007098 0.46 AT3G48580.1
AT3G48580.2
AT3G48580.3
XTH11
xyloglucan endotransglucosylase/hydrolase 11
Chr5_+_15274326 0.46 AT5G38230.1
AT5G38230

Chr2_+_3515139 0.45 AT2G07680.6
ABCC13
multidrug resistance-associated protein 11
Chr3_-_6716178 0.45 AT3G19380.1
PUB25
plant U-box 25
Chr3_+_15509527 0.45 AT3G43590.1
AT3G43590
zinc knuckle (CCHC-type) family protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G20770

PNG image of the network

In order to view interactive SVG image please either update your browser to latest version or install SVG plugin.
View svg image
View png image

Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
1.2 8.5 GO:0010438 cellular response to sulfur starvation(GO:0010438)
0.6 3.0 GO:0019419 sulfate reduction(GO:0019419)
0.6 2.9 GO:1902418 (+)-abscisic acid D-glucopyranosyl ester transmembrane transport(GO:1902418)
0.6 2.8 GO:1903175 fatty alcohol biosynthetic process(GO:1903175)
0.5 2.0 GO:0006419 alanyl-tRNA aminoacylation(GO:0006419)
0.5 2.9 GO:0070982 cellular response to sucrose starvation(GO:0043617) L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982)
0.4 2.2 GO:0035864 response to potassium ion(GO:0035864)
0.4 1.5 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.3 0.9 GO:0010269 response to selenium ion(GO:0010269)
0.3 1.5 GO:0006216 cytidine catabolic process(GO:0006216) cytidine deamination(GO:0009972) cytidine metabolic process(GO:0046087)
0.2 0.7 GO:0033259 plastid DNA metabolic process(GO:0033258) plastid DNA replication(GO:0033259)
0.2 1.1 GO:0009807 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.2 1.3 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.2 0.9 GO:0002679 respiratory burst involved in defense response(GO:0002679) respiratory burst(GO:0045730)
0.2 1.2 GO:0010929 positive regulation of auxin mediated signaling pathway(GO:0010929)
0.2 1.9 GO:0032527 protein exit from endoplasmic reticulum(GO:0032527)
0.2 1.1 GO:0010325 raffinose family oligosaccharide biosynthetic process(GO:0010325)
0.1 2.8 GO:0033238 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.1 1.7 GO:0070828 heterochromatin organization(GO:0070828)
0.1 1.7 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.1 2.9 GO:0098869 cellular oxidant detoxification(GO:0098869)
0.1 1.6 GO:0009864 induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864)
0.1 0.5 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.1 0.5 GO:0046622 positive regulation of organ growth(GO:0046622)
0.1 2.0 GO:0009969 xyloglucan biosynthetic process(GO:0009969)
0.1 0.4 GO:0010353 response to trehalose(GO:0010353)
0.1 1.3 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.1 0.5 GO:0090057 root radial pattern formation(GO:0090057)
0.1 0.7 GO:0046294 formaldehyde catabolic process(GO:0046294)
0.1 0.6 GO:0010230 alternative respiration(GO:0010230)
0.1 1.3 GO:0009641 shade avoidance(GO:0009641)
0.1 0.5 GO:0032042 mitochondrial DNA metabolic process(GO:0032042)
0.1 2.6 GO:0016126 sterol biosynthetic process(GO:0016126)
0.1 0.7 GO:0048317 seed morphogenesis(GO:0048317)
0.1 0.8 GO:0010115 regulation of abscisic acid biosynthetic process(GO:0010115)
0.1 0.2 GO:0031440 regulation of mRNA 3'-end processing(GO:0031440) regulation of mRNA polyadenylation(GO:1900363)
0.1 0.3 GO:0071492 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.1 0.4 GO:0010344 seed oilbody biogenesis(GO:0010344)
0.1 1.3 GO:0030091 protein repair(GO:0030091)
0.0 1.5 GO:0010193 response to ozone(GO:0010193)
0.0 1.0 GO:0000162 tryptophan biosynthetic process(GO:0000162) indolalkylamine biosynthetic process(GO:0046219)
0.0 1.3 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.0 0.4 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.0 0.4 GO:0015804 neutral amino acid transport(GO:0015804)
0.0 0.4 GO:0033169 histone H3-K9 demethylation(GO:0033169)
0.0 0.4 GO:0072659 protein localization to plasma membrane(GO:0072659)
0.0 0.3 GO:0048830 adventitious root development(GO:0048830)
0.0 0.3 GO:0044848 cell cycle phase(GO:0022403) biological phase(GO:0044848) mitotic cell cycle phase(GO:0098763)
0.0 0.2 GO:0070898 RNA polymerase III transcriptional preinitiation complex assembly(GO:0070898)
0.0 0.8 GO:0002213 defense response to insect(GO:0002213)
0.0 0.4 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0 0.5 GO:0032544 plastid translation(GO:0032544)
0.0 0.3 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.0 1.1 GO:0071472 cellular response to salt stress(GO:0071472)
0.0 0.9 GO:0043069 negative regulation of programmed cell death(GO:0043069)
0.0 0.6 GO:0015770 sucrose transport(GO:0015770)
0.0 0.1 GO:0002215 defense response to nematode(GO:0002215)
0.0 0.6 GO:0060688 regulation of morphogenesis of a branching structure(GO:0060688) regulation of secondary shoot formation(GO:2000032)
0.0 0.2 GO:0006116 NADH oxidation(GO:0006116)
0.0 0.4 GO:0042793 transcription from plastid promoter(GO:0042793)
0.0 0.3 GO:0006821 chloride transport(GO:0006821)
0.0 2.3 GO:0009873 ethylene-activated signaling pathway(GO:0009873)
0.0 1.4 GO:0019762 S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762)
0.0 0.4 GO:0010440 stomatal lineage progression(GO:0010440)
0.0 0.5 GO:0009086 methionine biosynthetic process(GO:0009086)
0.0 0.5 GO:0010112 regulation of systemic acquired resistance(GO:0010112)
0.0 0.3 GO:0048280 vesicle fusion with Golgi apparatus(GO:0048280)
0.0 0.1 GO:0006015 5-phosphoribose 1-diphosphate biosynthetic process(GO:0006015) 5-phosphoribose 1-diphosphate metabolic process(GO:0046391)
0.0 0.5 GO:0042435 indole-containing compound biosynthetic process(GO:0042435)
0.0 0.1 GO:0033385 geranylgeranyl diphosphate metabolic process(GO:0033385) geranylgeranyl diphosphate biosynthetic process(GO:0033386)
0.0 0.4 GO:0006896 Golgi to vacuole transport(GO:0006896)
0.0 0.1 GO:0051457 maintenance of protein location in nucleus(GO:0051457)
0.0 0.6 GO:0010252 auxin homeostasis(GO:0010252)
0.0 0.1 GO:0001672 regulation of chromatin assembly or disassembly(GO:0001672)
0.0 0.3 GO:0009089 lysine biosynthetic process via diaminopimelate(GO:0009089) diaminopimelate metabolic process(GO:0046451)
0.0 1.4 GO:0009834 plant-type secondary cell wall biogenesis(GO:0009834)
0.0 0.4 GO:1900150 regulation of defense response to fungus(GO:1900150)
0.0 1.7 GO:0010200 response to chitin(GO:0010200)
0.0 0.5 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 0.0 GO:0071569 protein ufmylation(GO:0071569)
0.0 0.4 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.1 GO:0031022 nuclear migration along microfilament(GO:0031022)
0.0 0.3 GO:0008361 regulation of cell size(GO:0008361)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.3 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.1 1.7 GO:0000792 heterochromatin(GO:0000792)
0.1 2.1 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.1 3.2 GO:0005764 lysosome(GO:0005764)
0.1 0.2 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130)
0.1 1.1 GO:0016602 CCAAT-binding factor complex(GO:0016602)
0.0 1.9 GO:0010319 stromule(GO:0010319)
0.0 0.2 GO:0000126 transcription factor TFIIIB complex(GO:0000126)
0.0 0.4 GO:0017119 Golgi transport complex(GO:0017119)
0.0 0.5 GO:0032300 mismatch repair complex(GO:0032300)
0.0 0.2 GO:0009331 glycerol-3-phosphate dehydrogenase complex(GO:0009331)
0.0 0.2 GO:0005847 mRNA cleavage and polyadenylation specificity factor complex(GO:0005847)
0.0 0.1 GO:0002189 ribose phosphate diphosphokinase complex(GO:0002189)
0.0 0.3 GO:0005788 endoplasmic reticulum lumen(GO:0005788)
0.0 0.3 GO:0031902 late endosome membrane(GO:0031902)
0.0 1.3 GO:0016607 nuclear speck(GO:0016607)
0.0 0.2 GO:0000795 synaptonemal complex(GO:0000795)
0.0 2.5 GO:0000325 plant-type vacuole(GO:0000325)
0.0 0.7 GO:0042644 chloroplast nucleoid(GO:0042644)
0.0 0.3 GO:0000118 histone deacetylase complex(GO:0000118)
0.0 0.1 GO:0012507 ER to Golgi transport vesicle membrane(GO:0012507)
0.0 0.3 GO:0000307 cyclin-dependent protein kinase holoenzyme complex(GO:0000307)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 2.6 GO:0000249 C-22 sterol desaturase activity(GO:0000249)
0.7 3.0 GO:0009973 adenylyl-sulfate reductase activity(GO:0009973) adenylyl-sulfate reductase (glutathione) activity(GO:0033741)
0.7 3.3 GO:0042085 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.6 2.9 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.5 2.0 GO:0004813 alanine-tRNA ligase activity(GO:0004813)
0.4 2.9 GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066)
0.4 2.5 GO:0004792 thiosulfate sulfurtransferase activity(GO:0004792)
0.4 2.3 GO:0004848 ureidoglycolate hydrolase activity(GO:0004848)
0.4 1.1 GO:0010331 gibberellin binding(GO:0010331)
0.4 1.1 GO:0010283 pinoresinol reductase activity(GO:0010283)
0.3 1.0 GO:0033984 indole-3-glycerol-phosphate lyase activity(GO:0033984)
0.3 1.3 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.3 0.9 GO:0080132 fatty acid alpha-hydroxylase activity(GO:0080132)
0.3 1.3 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.3 1.5 GO:0004126 cytidine deaminase activity(GO:0004126)
0.2 2.3 GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.2 0.9 GO:0008430 selenium binding(GO:0008430)
0.2 1.5 GO:1990137 plant seed peroxidase activity(GO:1990137)
0.2 1.3 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.1 0.5 GO:0004075 biotin carboxylase activity(GO:0004075)
0.1 1.3 GO:0000293 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.1 1.3 GO:0033743 peptide-methionine (R)-S-oxide reductase activity(GO:0033743)
0.1 1.2 GO:0032440 2-alkenal reductase [NAD(P)] activity(GO:0032440)
0.1 0.3 GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase(GO:0008839)
0.1 0.4 GO:0045544 gibberellin 20-oxidase activity(GO:0045544)
0.1 0.7 GO:0004024 alcohol dehydrogenase activity, zinc-dependent(GO:0004024)
0.1 8.0 GO:0015144 carbohydrate transmembrane transporter activity(GO:0015144)
0.1 0.6 GO:0009916 alternative oxidase activity(GO:0009916)
0.1 1.2 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.1 0.3 GO:0016856 racemase and epimerase activity, acting on hydroxy acids and derivatives(GO:0016856)
0.1 0.2 GO:1990247 N6-methyladenosine-containing RNA binding(GO:1990247)
0.1 0.4 GO:0032454 histone demethylase activity (H3-K9 specific)(GO:0032454)
0.1 0.2 GO:0019166 trans-2-enoyl-CoA reductase (NADPH) activity(GO:0019166)
0.1 0.6 GO:0004806 triglyceride lipase activity(GO:0004806)
0.1 1.7 GO:0005179 hormone activity(GO:0005179)
0.1 0.3 GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) lysophosphatidic acid acyltransferase activity(GO:0042171)
0.0 0.3 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.0 2.5 GO:0102483 scopolin beta-glucosidase activity(GO:0102483)
0.0 0.4 GO:0015172 acidic amino acid transmembrane transporter activity(GO:0015172)
0.0 0.5 GO:0008252 nucleotidase activity(GO:0008252)
0.0 0.7 GO:0003887 DNA-directed DNA polymerase activity(GO:0003887)
0.0 0.4 GO:0004029 aldehyde dehydrogenase (NAD) activity(GO:0004029)
0.0 0.3 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.5 GO:0030983 mismatched DNA binding(GO:0030983)
0.0 0.1 GO:0004749 ribose phosphate diphosphokinase activity(GO:0004749)
0.0 1.0 GO:0044390 ubiquitin-like protein conjugating enzyme binding(GO:0044390)
0.0 0.2 GO:0032036 myosin tail binding(GO:0032029) myosin heavy chain binding(GO:0032036) myosin XI tail binding(GO:0080115)
0.0 1.4 GO:0031625 ubiquitin protein ligase binding(GO:0031625)
0.0 0.3 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.0 0.2 GO:0052623 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 1.6 GO:0046910 pectinesterase inhibitor activity(GO:0046910)
0.0 0.1 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)
0.0 2.8 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.4 GO:0005089 Rho guanyl-nucleotide exchange factor activity(GO:0005089)
0.0 0.2 GO:0009979 16:0 monogalactosyldiacylglycerol desaturase activity(GO:0009979)
0.0 1.3 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.5 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.5 GO:0008266 poly(U) RNA binding(GO:0008266)
0.0 0.2 GO:0044620 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process(GO:0000036) ACP phosphopantetheine attachment site binding(GO:0044620) prosthetic group binding(GO:0051192)
0.0 0.6 GO:0008171 O-methyltransferase activity(GO:0008171)
0.0 0.3 GO:0042973 glucan endo-1,3-beta-D-glucosidase activity(GO:0042973)
0.0 0.7 GO:0008094 DNA-dependent ATPase activity(GO:0008094)
0.0 0.3 GO:0016168 chlorophyll binding(GO:0016168)
0.0 0.3 GO:0043424 protein histidine kinase binding(GO:0043424)
0.0 0.2 GO:0015114 phosphate ion transmembrane transporter activity(GO:0015114)
0.0 0.3 GO:0016538 cyclin-dependent protein serine/threonine kinase regulator activity(GO:0016538)
0.0 0.6 GO:0000987 core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159)
0.0 0.1 GO:0004337 geranyltranstransferase activity(GO:0004337)
0.0 1.3 GO:0046982 protein heterodimerization activity(GO:0046982)
0.0 0.2 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 0.4 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 0.1 PID HIF1A PATHWAY Hypoxic and oxygen homeostasis regulation of HIF-1-alpha

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 1.3 REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT Genes involved in ABC-family proteins mediated transport
0.0 0.3 REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism
0.0 0.2 REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES Genes involved in Chemokine receptors bind chemokines
0.0 0.2 REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION Genes involved in Transcriptional Regulation of White Adipocyte Differentiation