Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT3G20310
Z-value: 1.48
Transcription factors associated with AT3G20310
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G20310
|
AT3G20310 | ethylene response factor 7 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF7 | arTal_v1_Chr3_-_7086894_7086894 | -0.11 | 7.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_+_9698940_9698940 Show fit | 2.33 |
AT4G17340.1
|
tonoplast intrinsic protein 2;2 |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.30 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 2.27 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 2.08 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 1.99 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.78 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_+_7664871_7664871 Show fit | 1.76 |
AT5G22920.2
AT5G22920.1 |
CHY-type/CTCHY-type/RING-type Zinc finger protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.70 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 1.59 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 1.55 |
AT1G77520.1
|
O-methyltransferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G20310
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 17.1 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 9.8 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.2 | 9.3 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.1 | 5.1 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.3 | 5.0 | GO:0006030 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
| 0.2 | 3.6 | GO:0080163 | regulation of protein serine/threonine phosphatase activity(GO:0080163) |
| 0.1 | 3.6 | GO:0009718 | anthocyanin-containing compound biosynthetic process(GO:0009718) |
| 0.4 | 3.5 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.2 | 3.2 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.2 | 3.2 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 48.6 | GO:0005576 | extracellular region(GO:0005576) |
| 0.1 | 16.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 8.4 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 2.7 | GO:0048226 | Casparian strip(GO:0048226) |
| 0.1 | 2.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.2 | 2.4 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 1.6 | GO:0005764 | lysosome(GO:0005764) |
| 0.2 | 1.5 | GO:0031588 | nucleotide-activated protein kinase complex(GO:0031588) |
| 0.0 | 1.3 | GO:0000145 | exocyst(GO:0000145) |
| 0.2 | 1.2 | GO:0005960 | glycine cleavage complex(GO:0005960) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.5 | GO:0020037 | heme binding(GO:0020037) |
| 0.1 | 6.0 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.6 | 4.7 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.2 | 4.3 | GO:0019840 | abscisic acid binding(GO:0010427) isoprenoid binding(GO:0019840) |
| 0.2 | 4.3 | GO:0004568 | chitinase activity(GO:0004568) |
| 0.1 | 3.8 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.3 | 3.5 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.2 | 3.3 | GO:0015250 | water transmembrane transporter activity(GO:0005372) water channel activity(GO:0015250) |
| 0.6 | 2.9 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.1 | 2.8 | GO:0070001 | aspartic-type peptidase activity(GO:0070001) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.5 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.3 | 1.2 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
| 0.2 | 1.0 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 0.8 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.2 | 0.7 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |
| 0.1 | 0.7 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.6 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.2 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.2 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.7 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.5 | 1.5 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.1 | 1.1 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 0.8 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.2 | 0.8 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.7 | REACTOME HOMOLOGOUS RECOMBINATION REPAIR OF REPLICATION INDEPENDENT DOUBLE STRAND BREAKS | Genes involved in Homologous recombination repair of replication-independent double-strand breaks |
| 0.2 | 0.6 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.5 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.5 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.4 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |