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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G18990
Z-value: 1.11
Transcription factors associated with AT3G18990
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G18990
|
AT3G18990 | AP2/B3-like transcriptional factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| VRN1 | arTal_v1_Chr3_-_6552034_6552055 | -0.43 | 1.3e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.70 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.69 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 1.50 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr5_+_9200271_9200271 Show fit | 1.42 |
AT5G26260.1
|
TRAF-like family protein |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 1.41 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_15378416_15378416 Show fit | 1.35 |
AT5G38410.3
AT5G38410.2 |
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_15378642_15378642 Show fit | 1.34 |
AT5G38410.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr5_-_19036938_19036938 Show fit | 1.32 |
AT5G46890.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 1.30 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr4_+_17852441_17852441 Show fit | 1.11 |
AT4G37980.2
AT4G37980.1 |
cinnamyl alcohol dehydrogenase 7 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G18990
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 8.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 8.2 | GO:0010200 | response to chitin(GO:0010200) |
| 0.5 | 4.8 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.9 | 3.6 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.1 | 2.4 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.0 | 2.2 | GO:0006633 | fatty acid biosynthetic process(GO:0006633) |
| 0.1 | 1.9 | GO:0015865 | purine nucleotide transport(GO:0015865) |
| 0.5 | 1.8 | GO:0006097 | glyoxylate cycle(GO:0006097) |
| 0.3 | 1.8 | GO:0009759 | indole glucosinolate biosynthetic process(GO:0009759) |
| 0.0 | 1.7 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 0.9 | GO:0016324 | apical plasma membrane(GO:0016324) |
| 0.0 | 0.9 | GO:0090406 | pollen tube(GO:0090406) |
| 0.3 | 0.8 | GO:0009514 | glyoxysome(GO:0009514) |
| 0.3 | 0.8 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.0 | 0.8 | GO:0005811 | lipid particle(GO:0005811) |
| 0.2 | 0.7 | GO:0009317 | acetyl-CoA carboxylase complex(GO:0009317) |
| 0.0 | 0.7 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.1 | 0.6 | GO:0071818 | BAT3 complex(GO:0071818) |
| 0.1 | 0.6 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.7 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.0 | 2.4 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.2 | 2.0 | GO:0005471 | ATP:ADP antiporter activity(GO:0005471) |
| 0.1 | 1.9 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 1.8 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.1 | 1.6 | GO:0052747 | sinapyl alcohol dehydrogenase activity(GO:0052747) |
| 0.1 | 1.5 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
| 0.2 | 1.4 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 1.4 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 1.4 | GO:0004523 | RNA-DNA hybrid ribonuclease activity(GO:0004523) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.1 | 0.2 | PID ARF 3PATHWAY | Arf1 pathway |
| 0.0 | 0.2 | PID E2F PATHWAY | E2F transcription factor network |
| 0.0 | 0.1 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.0 | 0.1 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.1 | 0.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.2 | REACTOME COPI MEDIATED TRANSPORT | Genes involved in COPI Mediated Transport |
| 0.1 | 0.2 | REACTOME G1 PHASE | Genes involved in G1 Phase |
| 0.0 | 0.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |
| 0.0 | 0.2 | REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS | Genes involved in ABCA transporters in lipid homeostasis |
| 0.0 | 0.1 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |