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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G18400

Z-value: 0.86

Transcription factors associated with AT3G18400

Gene Symbol Gene ID Gene Info
AT3G18400 NAC domain containing protein 58

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
NAC058arTal_v1_Chr3_-_6320712_63207120.421.3e-01Click!

Activity profile of AT3G18400 motif

Sorted Z-values of AT3G18400 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr2_-_17712290 1.55 AT2G42540.2
AT2G42540.4
AT2G42540.1
AT2G42540.3
cold-regulated 15a
Chr2_+_538250 1.24 AT2G02120.1
Scorpion toxin-like knottin superfamily protein
Chr5_+_21240717 1.10 AT5G52310.1
low-temperature-responsive protein 78 (LTI78) / desiccation-responsive protein 29A (RD29A)
Chr3_+_4104463 1.01 AT3G12900.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_9275193 0.95 AT1G26790.1
Dof-type zinc finger DNA-binding family protein
Chr4_+_15451988 0.93 AT4G31940.1
cytochrome P450, family 82, subfamily C, polypeptide 4
Chr4_+_14954204 0.88 AT4G30650.1
Low temperature and salt responsive protein family
Chr4_-_7401951 0.87 AT4G12470.1
azelaic acid induced 1
Chr1_-_10164452 0.82 AT1G29090.1
Cysteine proteinases superfamily protein
Chr4_+_8827600 0.81 AT4G15430.2
AT4G15430.1
ERD (early-responsive to dehydration stress) family protein
Chr4_-_15954803 0.80 AT4G33070.1
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein
Chr5_+_19481897 0.79 AT5G48070.1
xyloglucan endotransglucosylase/hydrolase 20
Chr5_+_20151163 0.74 AT5G49640.1
hypothetical protein
Chr1_+_5872024 0.74 AT1G17180.1
glutathione S-transferase TAU 25
Chr3_+_5562400 0.73 AT3G16390.2
nitrile specifier protein 3
Chr2_+_13381767 0.73 AT2G31380.1
salt tolerance homologue
Chr3_+_5562558 0.72 AT3G16390.1
nitrile specifier protein 3
Chr2_+_6893949 0.72 AT2G15830.1
hypothetical protein
Chr2_-_18082776 0.70 AT2G43590.1
Chitinase family protein
Chr2_+_12004658 0.70 AT2G28160.1
AT2G28160.2
FER-like regulator of iron uptake
Chr2_+_13987669 0.69 AT2G32960.1
Phosphotyrosine protein phosphatases superfamily protein
Chr1_-_26163715 0.68 AT1G69570.1
Dof-type zinc finger DNA-binding family protein
Chr5_-_7054281 0.67 AT5G20830.3
sucrose synthase 1
Chr4_+_10707344 0.66 AT4G19690.2
AT4G19690.1
iron-regulated transporter 1
Chr4_-_16285229 0.66 AT4G33980.1
hypothetical protein
Chr5_-_7054713 0.66 AT5G20830.1
sucrose synthase 1
Chr4_-_16285059 0.65 AT4G33980.2
hypothetical protein
Chr5_-_7055398 0.65 AT5G20830.2
sucrose synthase 1
Chr4_+_8646150 0.64 AT4G15160.2
AT4G15160.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr3_+_3923515 0.63 AT3G12320.1
hypothetical protein
Chr5_+_1629610 0.63 AT5G05500.1
Pollen Ole e 1 allergen and extensin family protein
Chr3_+_3923735 0.62 AT3G12320.2
hypothetical protein
Chr3_+_3595694 0.62 AT3G11430.1
glycerol-3-phosphate acyltransferase 5
Chr3_-_8085669 0.61 AT3G22840.1
Chlorophyll A-B binding family protein
Chr3_+_3923969 0.61 AT3G12320.3
hypothetical protein
Chr1_+_209208 0.61 AT1G01580.1
ferric reduction oxidase 2
Chr1_+_208995 0.61 AT1G01580.2
ferric reduction oxidase 2
Chr2_-_968048 0.60 AT2G03200.1
Eukaryotic aspartyl protease family protein
Chr3_+_22935510 0.60 AT3G61930.1
hypothetical protein
Chr1_+_18546086 0.60 AT1G50050.2
AT1G50050.1
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Chr5_-_22712441 0.59 AT5G56080.1
nicotianamine synthase 2
Chr5_-_16252434 0.58 AT5G40590.1
Cysteine/Histidine-rich C1 domain family protein
Chr4_-_18472048 0.58 AT4G39800.1
myo-inositol-1-phosphate synthase 1
Chr3_-_17475274 0.57 AT3G47420.3
AT3G47420.1
AT3G47420.2
putative glycerol-3-phosphate transporter 1
Chr3_-_4359007 0.57 AT3G13404.1
hypothetical protein
Chr5_-_18189523 0.56 AT5G45070.1
phloem protein 2-A8
Chr3_-_2569700 0.56 AT3G08040.2
AT3G08040.1
MATE efflux family protein
Chr5_-_8406132 0.56 AT5G24570.1
AT5G24575.1
hypothetical protein
hypothetical protein
Chr3_-_7101637 0.55 AT3G20360.1
TRAF-like family protein
Chr3_+_19845097 0.55 AT3G53530.2
AT3G53530.1
Chloroplast-targeted copper chaperone protein
Chr1_+_3093644 0.54 AT1G09560.1
germin-like protein 5
Chr1_+_23168767 0.54 AT1G62570.1
flavin-monooxygenase glucosinolate S-oxygenase 4
Chr5_-_2951701 0.53 AT5G09480.1
hydroxyproline-rich glycoprotein family protein
Chr1_-_22871298 0.52 AT1G61890.3
AT1G61890.1
AT1G61890.2
MATE efflux family protein
Chr3_-_19078955 0.52 AT3G51400.1
hypothetical protein (DUF241)
Chr1_-_16917053 0.52 AT1G44800.1
nodulin MtN21 /EamA-like transporter family protein
Chr5_+_22388782 0.52 AT5G55180.2
O-Glycosyl hydrolases family 17 protein
Chr1_-_29459493 0.52 AT1G78290.2
AT1G78290.3
Protein kinase superfamily protein
Chr3_+_5720941 0.52 AT3G16800.5
AT3G16800.4
AT3G16800.2
AT3G16800.6
AT3G16800.1
Protein phosphatase 2C family protein
Chr4_-_993039 0.51 AT4G02270.1
root hair specific 13
Chr5_+_15588623 0.51 AT5G38940.2
AT5G38940.1
RmlC-like cupins superfamily protein
Chr1_-_22363854 0.51 AT1G60750.1
NAD(P)-linked oxidoreductase superfamily protein
Chr5_+_22388521 0.50 AT5G55180.1
O-Glycosyl hydrolases family 17 protein
Chr1_+_29836644 0.50 AT1G79320.1
metacaspase 6
Chr5_+_21069495 0.49 AT5G51830.2
pfkB-like carbohydrate kinase family protein
Chr5_+_21069110 0.49 AT5G51830.1
pfkB-like carbohydrate kinase family protein
Chr3_-_1756924 0.49 AT3G05880.1
Low temperature and salt responsive protein family
Chr4_-_9779939 0.49 AT4G17550.1
Major facilitator superfamily protein
Chr5_+_25040540 0.48 AT5G62360.1
Plant invertase/pectin methylesterase inhibitor superfamily protein
Chr1_+_28174187 0.48 AT1G75030.1
thaumatin-like protein 3
Chr5_-_6547127 0.48 AT5G19410.1
AT5G19410.2
ABC-2 type transporter family protein
Chr2_-_19370478 0.48 AT2G47180.1
galactinol synthase 1
Chr2_+_12706627 0.48 AT2G29740.1
UDP-glucosyl transferase 71C2
Chr1_+_22198266 0.48 AT1G60190.1
ARM repeat superfamily protein
Chr1_-_7086873 0.48 AT1G20440.1
cold-regulated 47
Chr5_-_23117403 0.47 AT5G57110.3
AT5G57110.1
AT5G57110.2
autoinhibited Ca2+ -ATPase, isoform 8
Chr5_+_23701392 0.47 AT5G58660.1
AT5G58660.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_-_1652149 0.47 AT3G05660.1
receptor like protein 33
Chr5_-_23768111 0.47 AT5G58860.1
cytochrome P450, family 86, subfamily A, polypeptide 1
Chr4_+_13675537 0.47 AT4G27310.1
B-box type zinc finger family protein
Chr4_-_13022996 0.47 AT4G25490.1
C-repeat/DRE binding factor 1
Chr1_+_25508639 0.46 AT1G68050.1
flavin-binding, kelch repeat, f box 1
Chr2_+_9248525 0.46 AT2G21620.1
AT2G21620.2
Adenine nucleotide alpha hydrolases-like superfamily protein
Chr2_+_14892495 0.46 AT2G35380.2
AT2G35380.1
Peroxidase superfamily protein
Chr1_+_25701770 0.46 AT1G68500.1
hypothetical protein
Chr5_+_1835047 0.45 AT5G06090.1
glycerol-3-phosphate acyltransferase 7
Chr1_-_20578308 0.45 AT1G55152.1
hypothetical protein
Chr3_+_5585872 0.45 AT3G16440.2
AT3G16440.1
myrosinase-binding protein-like protein-300B
Chr3_+_3203988 0.45 AT3G10340.1
phenylalanine ammonia-lyase 4
Chr3_+_4449259 0.45 AT3G13610.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_-_17755742 0.45 AT5G44110.2
AT5G44110.4
AT5G44110.3
AT5G44110.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_-_2365605 0.45 AT5G07475.1
Cupredoxin superfamily protein
Chr4_-_12345652 0.44 AT4G23700.2
cation/H+ exchanger 17
Chr3_+_5721225 0.44 AT3G16800.3
Protein phosphatase 2C family protein
Chr2_-_19287590 0.44 AT2G46940.1
fold protein
Chr4_-_12346051 0.44 AT4G23700.1
cation/H+ exchanger 17
Chr5_-_4026849 0.44 AT5G12420.1
AT5G12420.2
O-acyltransferase (WSD1-like) family protein
Chr1_-_507268 0.44 AT1G02460.1
Pectin lyase-like superfamily protein
Chr1_-_18238497 0.44 AT1G49310.1
transmembrane protein
Chr2_-_17202848 0.44 AT2G41250.1
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr5_-_4526068 0.43 AT5G14020.7
AT5G14020.6
AT5G14020.4
AT5G14020.1
AT5G14020.2
AT5G14020.5
AT5G14020.3
Endosomal targeting BRO1-like domain-containing protein
Chr4_+_17639 0.43 AT4G00050.1
AT4G00050.3
AT4G00050.2
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr5_-_5862462 0.43 AT5G17760.2
AT5G17760.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr5_+_21771811 0.43 AT5G53590.1
SAUR-like auxin-responsive protein family
Chr3_+_8941066 0.42 AT3G24520.1
heat shock transcription factor C1
Chr5_-_2958971 0.42 AT5G09520.1
hydroxyproline-rich glycoprotein family protein
Chr4_-_12533924 0.42 AT4G24140.1
alpha/beta-Hydrolases superfamily protein
Chr2_-_12343443 0.42 AT2G28780.1
P-hydroxybenzoic acid efflux pump subunit
Chr1_-_25885261 0.41 AT1G68850.1
Peroxidase superfamily protein
Chr5_-_8358546 0.41 AT5G24470.1
two-component response regulator-like protein
Chr1_-_7550741 0.41 AT1G21540.1
AMP-dependent synthetase and ligase family protein
Chr4_+_12649985 0.41 AT4G24480.2
AT4G24480.1
AT4G24480.3
Protein kinase superfamily protein
Chr1_-_2165261 0.41 AT1G07050.2
AT1G07050.1
CCT motif family protein
Chr1_+_6763765 0.41 AT1G19530.1
AT1G19530.2
DNA polymerase epsilon catalytic subunit A
Chr2_+_8647721 0.40 AT2G20030.1
RING/U-box superfamily protein
Chr5_-_6976036 0.40 AT5G20630.1
germin 3
Chr5_+_3347381 0.40 AT5G10580.3
AT5G10580.4
AT5G10580.1
AT5G10580.2
plant/protein (Protein of unknown function, DUF599)
Chr1_+_27628678 0.40 AT1G73480.1
alpha/beta-Hydrolases superfamily protein
Chr1_-_19683565 0.40 AT1G52855.1
hypothetical protein
Chr1_+_4342209 0.40 AT1G12740.1
AT1G12740.2
AT1G12740.3
AT1G12740.4
cytochrome P450, family 87, subfamily A, polypeptide 2
Chr1_-_10184512 0.40 AT1G29160.1
Dof-type zinc finger DNA-binding family protein
Chr3_+_2907479 0.40 AT3G09450.1
fusaric acid resistance family protein
Chr3_+_7275645 0.40 AT3G20810.1
AT3G20810.4
AT3G20810.2
AT3G20810.5
AT3G20810.3
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr3_+_9475350 0.40 AT3G25890.2
AT3G25890.1
Integrase-type DNA-binding superfamily protein
Chr5_-_7255944 0.39 AT5G21950.7
AT5G21950.2
AT5G21950.3
AT5G21950.1
AT5G21950.4
AT5G21950.6
AT5G21950.5
alpha/beta-Hydrolases superfamily protein
Chr3_-_19139423 0.39 AT3G51600.1
lipid transfer protein 5
Chr4_-_18581696 0.39 AT4G40090.1
arabinogalactan protein 3
Chr1_-_5194214 0.39 AT1G15100.1
RING-H2 finger A2A
Chr5_-_17943283 0.39 AT5G44550.1
Uncharacterized protein family (UPF0497)
Chr2_-_15955752 0.39 AT2G38110.1
glycerol-3-phosphate acyltransferase 6
Chr4_+_8418242 0.39 AT4G14690.1
Chlorophyll A-B binding family protein
Chr5_+_7426310 0.39 AT5G22410.1
root hair specific 18
Chr4_-_11313709 0.39 AT4G21215.1
AT4G21215.2
transmembrane protein
Chr5_-_2359311 0.38 AT5G07450.1
cyclin p4;3
Chr1_+_1529767 0.38 AT1G05260.1
Peroxidase superfamily protein
Chr1_-_27755297 0.38 AT1G73810.1
Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein
Chr4_+_5244865 0.38 AT4G08300.1
nodulin MtN21 /EamA-like transporter family protein
Chr3_+_16138375 0.38 AT3G44550.2
fatty acid reductase 5
Chr4_-_6718550 0.38 AT4G10960.1
UDP-D-glucose/UDP-D-galactose 4-epimerase 5
Chr4_+_15455083 0.38 AT4G31950.1
cytochrome P450, family 82, subfamily C, polypeptide 3
Chr1_+_29354944 0.38 AT1G78070.1
Transducin/WD40 repeat-like superfamily protein
Chr5_-_23304095 0.38 AT5G57540.1
xyloglucan endotransglucosylase/hydrolase 13
Chr3_-_2890520 0.38 AT3G09390.2
AT3G09390.1
metallothionein 2A
Chr1_+_7404328 0.38 AT1G21140.1
Vacuolar iron transporter (VIT) family protein
Chr5_-_19977620 0.38 AT5G49280.1
hydroxyproline-rich glycoprotein family protein
Chr4_-_14542565 0.37 AT4G29690.1
Alkaline-phosphatase-like family protein
Chr1_+_21652988 0.37 AT1G58340.1
MATE efflux family protein
Chr2_-_9866562 0.37 AT2G23170.1
Auxin-responsive GH3 family protein
Chr5_-_900298 0.37 AT5G03555.1
permease, cytosine/purines, uracil, thiamine, allantoin family protein
Chr1_+_28829243 0.37 AT1G76800.1
Vacuolar iron transporter (VIT) family protein
Chr1_+_18305445 0.37 AT1G49450.1
Transducin/WD40 repeat-like superfamily protein
Chr4_-_14733628 0.37 AT4G30120.1
heavy metal atpase 3
Chr1_-_40945 0.37 AT1G01070.2
AT1G01070.1
nodulin MtN21 /EamA-like transporter family protein
Chr2_-_14310608 0.37 AT2G33830.2
Dormancy/auxin associated family protein
Chr1_+_7366775 0.37 AT1G21050.1
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr3_-_4794417 0.37 AT3G14362.1
ROTUNDIFOLIA like 10
Chr3_+_16137576 0.36 AT3G44550.1
fatty acid reductase 5
Chr5_-_25866972 0.36 AT5G64700.2
AT5G64700.1
nodulin MtN21 /EamA-like transporter family protein
Chr4_+_16746525 0.36 AT4G35190.2
Putative lysine decarboxylase family protein
Chr1_+_1520278 0.36 AT1G05240.1
Peroxidase superfamily protein
Chr1_+_18876810 0.36 AT1G50930.2
AT1G50930.1
Serine/Threonine-kinase
Chr4_-_13317640 0.36 AT4G26320.1
arabinogalactan protein 13
Chr2_+_15005064 0.36 AT2G35700.1
ERF family protein 38
Chr5_+_880148 0.36 AT5G03510.1
C2H2-type zinc finger family protein
Chr3_-_20048190 0.36 AT3G54140.2
peptide transporter 1
Chr1_+_27538190 0.36 AT1G73220.1
organic cation/carnitine transporter1
Chr3_+_3556554 0.35 AT3G11340.1
UDP-Glycosyltransferase superfamily protein
Chr1_+_29356346 0.35 AT1G78070.2
AT1G78070.3
Transducin/WD40 repeat-like superfamily protein
Chr5_+_3536189 0.35 AT5G11110.1
sucrose phosphate synthase 2F
Chr1_+_7366590 0.35 AT1G21050.2
MIZU-KUSSEI-like protein (Protein of unknown function, DUF617)
Chr4_-_14740742 0.35 AT4G30140.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr2_-_14310339 0.35 AT2G33830.1
Dormancy/auxin associated family protein
Chr5_-_8136150 0.35 AT5G24070.1
Peroxidase superfamily protein
Chr3_-_68665 0.35 AT3G01190.1
Peroxidase superfamily protein
Chr2_-_856725 0.35 AT2G02950.1
phytochrome kinase substrate 1
Chr5_+_20427749 0.35 AT5G50175.1
transmembrane protein
Chr4_+_12920742 0.35 AT4G25220.1
root hair specific 15
Chr2_-_19412328 0.35 AT2G47270.1
transcription factor UPBEAT protein
Chr3_-_20816035 0.35 AT3G56090.1
ferritin 3
Chr5_+_20070489 0.35 AT5G49480.1
Ca2+-binding protein 1
Chr1_-_28094915 0.35 AT1G74770.2
AT1G74770.1
zinc ion binding protein
Chr3_+_18487130 0.35 AT3G49845.1
cysteine-rich TM module stress tolerance protein
Chr5_+_18681326 0.35 AT5G46060.1
spastin, putative (Protein of unknown function, DUF599)
Chr1_-_22280593 0.35 AT1G60470.1
galactinol synthase 4
Chr2_+_18537177 0.35 AT2G44940.1
Integrase-type DNA-binding superfamily protein
Chr3_-_4834015 0.34 AT3G14440.1
nine-cis-epoxycarotenoid dioxygenase 3
Chr3_-_20048745 0.34 AT3G54140.1
peptide transporter 1
Chr1_-_10356482 0.34 AT1G29640.1
senescence regulator (Protein of unknown function, DUF584)
Chr3_+_5047589 0.34 AT3G14990.2
Class I glutamine amidotransferase-like superfamily protein
Chr3_+_5047376 0.34 AT3G14990.1
AT3G14990.3
Class I glutamine amidotransferase-like superfamily protein
Chr4_+_700566 0.34 AT4G01630.1
expansin A17
Chr4_+_131422 0.34 AT4G00305.1
RING/U-box superfamily protein
Chr1_+_18498639 0.34 AT1G49960.1
Xanthine/uracil permease family protein
Chr4_-_1046993 0.34 AT4G02380.2
AT4G02380.1
AT4G02380.3
senescence-associated gene 21
Chr3_-_8456708 0.34 AT3G23560.1
AT3G23560.2
MATE efflux family protein
Chr1_+_26122080 0.34 AT1G69490.1
NAC-like, activated by AP3/PI
Chr1_-_6754073 0.34 AT1G19490.1
Basic-leucine zipper (bZIP) transcription factor family protein
Chr2_-_394184 0.34 AT2G01880.1
purple acid phosphatase 7
Chr3_-_10790553 0.34 AT3G28740.1
Cytochrome P450 superfamily protein
Chr1_-_27291099 0.34 AT1G72490.2
AT1G72490.1
hypothetical protein

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G18400

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.9 0.9 GO:0071281 cellular response to iron ion(GO:0071281)
0.4 1.9 GO:0072708 response to sorbitol(GO:0072708)
0.3 1.0 GO:0072351 nicotianamine metabolic process(GO:0030417) nicotianamine biosynthetic process(GO:0030418) tricarboxylic acid biosynthetic process(GO:0072351)
0.2 2.1 GO:0009819 drought recovery(GO:0009819)
0.2 0.2 GO:0006498 N-terminal protein lipidation(GO:0006498) N-terminal protein myristoylation(GO:0006499) protein myristoylation(GO:0018377)
0.2 0.6 GO:0006658 phosphatidylserine metabolic process(GO:0006658) phosphatidylserine biosynthetic process(GO:0006659)
0.2 0.6 GO:0015696 ammonium transport(GO:0015696)
0.2 0.5 GO:0042353 fucose biosynthetic process(GO:0042353)
0.2 0.7 GO:1900409 positive regulation of cellular response to oxidative stress(GO:1900409)
0.2 0.5 GO:0090547 response to low humidity(GO:0090547)
0.2 1.0 GO:0070141 response to UV-A(GO:0070141) cellular response to UV-A(GO:0071492)
0.2 0.7 GO:0015675 nickel cation transport(GO:0015675)
0.2 1.1 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.2 0.3 GO:0019919 peptidyl-arginine methylation, to asymmetrical-dimethyl arginine(GO:0019919) peptidyl-arginine N-methylation(GO:0035246) peptidyl-arginine omega-N-methylation(GO:0035247)
0.1 0.8 GO:0055129 L-proline biosynthetic process(GO:0055129)
0.1 0.1 GO:0031115 negative regulation of microtubule polymerization(GO:0031115)
0.1 0.3 GO:1902884 positive regulation of response to oxidative stress(GO:1902884)
0.1 0.3 GO:0071485 cellular response to absence of light(GO:0071485)
0.1 0.5 GO:0010480 microsporocyte differentiation(GO:0010480)
0.1 1.8 GO:0072506 phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506)
0.1 0.8 GO:0071588 hydrogen peroxide mediated signaling pathway(GO:0071588)
0.1 0.3 GO:0044277 cell wall modification involved in abscission(GO:0009830) cell wall disassembly(GO:0044277)
0.1 1.8 GO:1902074 response to salt(GO:1902074)
0.1 0.2 GO:0015802 basic amino acid transport(GO:0015802)
0.1 0.7 GO:0043328 protein targeting to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043328)
0.1 0.8 GO:0032951 regulation of beta-glucan metabolic process(GO:0032950) regulation of beta-glucan biosynthetic process(GO:0032951) regulation of cellulose biosynthetic process(GO:2001006)
0.1 0.4 GO:0033353 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.1 0.1 GO:1901881 positive regulation of protein depolymerization(GO:1901881)
0.1 0.4 GO:0045948 positive regulation of translational initiation(GO:0045948)
0.1 0.7 GO:0043090 amino acid import(GO:0043090)
0.1 0.4 GO:0009660 amyloplast organization(GO:0009660)
0.1 0.4 GO:0046741 transport of virus in host, tissue to tissue(GO:0046741)
0.1 0.3 GO:0016110 tetraterpenoid catabolic process(GO:0016110) carotenoid catabolic process(GO:0016118) xanthophyll catabolic process(GO:0016124)
0.1 0.3 GO:0033321 homomethionine metabolic process(GO:0033321) glucosinolate biosynthetic process from homomethionine(GO:0033506)
0.1 0.4 GO:0071836 nectar secretion(GO:0071836)
0.1 0.3 GO:0010266 response to vitamin B1(GO:0010266)
0.1 0.2 GO:1901529 positive regulation of transporter activity(GO:0032411) positive regulation of ion transmembrane transporter activity(GO:0032414) positive regulation of anion channel activity(GO:1901529) positive regulation of anion transport(GO:1903793) positive regulation of anion transmembrane transport(GO:1903961)
0.1 0.3 GO:0071042 U1 snRNA 3'-end processing(GO:0034473) U5 snRNA 3'-end processing(GO:0034476) nuclear polyadenylation-dependent mRNA catabolic process(GO:0071042) polyadenylation-dependent mRNA catabolic process(GO:0071047)
0.1 1.2 GO:0010100 negative regulation of photomorphogenesis(GO:0010100)
0.1 0.3 GO:1905157 positive regulation of photosynthesis(GO:1905157)
0.1 2.7 GO:0010143 cutin biosynthetic process(GO:0010143)
0.1 0.4 GO:0080148 negative regulation of response to water deprivation(GO:0080148)
0.1 0.2 GO:0043132 NAD transport(GO:0043132)
0.1 0.8 GO:0080028 nitrile metabolic process(GO:0050898) nitrile biosynthetic process(GO:0080028)
0.1 1.0 GO:0010274 hydrotropism(GO:0010274)
0.1 0.2 GO:1902534 lysosomal microautophagy(GO:0016237) piecemeal microautophagy of nucleus(GO:0034727) single-organism membrane invagination(GO:1902534)
0.1 0.3 GO:0015697 quaternary ammonium group transport(GO:0015697)
0.1 0.2 GO:1900033 regulation of trichome patterning(GO:1900032) negative regulation of trichome patterning(GO:1900033)
0.1 0.4 GO:1901332 negative regulation of lateral root development(GO:1901332)
0.1 0.2 GO:1903428 positive regulation of reactive oxygen species biosynthetic process(GO:1903428)
0.1 0.2 GO:1901379 regulation of potassium ion transmembrane transport(GO:1901379) regulation of cation transmembrane transport(GO:1904062)
0.1 0.2 GO:1904812 rRNA acetylation involved in maturation of SSU-rRNA(GO:1904812) rRNA acetylation(GO:1990882) RNA acetylation(GO:1990884)
0.1 0.3 GO:0001173 DNA-templated transcriptional start site selection(GO:0001173)
0.1 0.4 GO:0072344 rescue of stalled ribosome(GO:0072344)
0.1 0.2 GO:0006493 protein O-linked glycosylation(GO:0006493)
0.1 0.2 GO:0010433 nectary development(GO:0010254) bract development(GO:0010432) bract morphogenesis(GO:0010433) bract formation(GO:0010434)
0.1 0.3 GO:0015854 adenine transport(GO:0015853) guanine transport(GO:0015854)
0.1 2.0 GO:0055072 iron ion homeostasis(GO:0055072)
0.1 0.2 GO:0009915 phloem sucrose loading(GO:0009915)
0.1 0.2 GO:0006501 C-terminal protein lipidation(GO:0006501)
0.1 0.4 GO:0043100 pyrimidine nucleobase salvage(GO:0043100)
0.1 0.4 GO:0010338 leaf formation(GO:0010338)
0.1 0.2 GO:0019594 hexitol metabolic process(GO:0006059) hexitol biosynthetic process(GO:0019406) mannitol biosynthetic process(GO:0019593) mannitol metabolic process(GO:0019594)
0.1 1.4 GO:0009269 response to desiccation(GO:0009269)
0.1 0.2 GO:0010541 acropetal auxin transport(GO:0010541)
0.1 0.2 GO:1990118 sodium ion transmembrane transport(GO:0035725) sodium ion import(GO:0097369) sodium ion import across plasma membrane(GO:0098719) sodium ion import into cell(GO:1990118)
0.1 0.4 GO:0030007 cellular potassium ion homeostasis(GO:0030007)
0.1 1.6 GO:0010345 suberin biosynthetic process(GO:0010345)
0.1 0.2 GO:1990532 stress response to nickel ion(GO:1990532)
0.1 0.2 GO:1902446 regulation of shade avoidance(GO:1902446) positive regulation of shade avoidance(GO:1902448)
0.1 0.3 GO:0000379 tRNA-type intron splice site recognition and cleavage(GO:0000379)
0.1 0.5 GO:0033319 UDP-D-xylose metabolic process(GO:0033319) UDP-D-xylose biosynthetic process(GO:0033320)
0.1 0.8 GO:0010497 plasmodesmata-mediated intercellular transport(GO:0010497)
0.1 0.8 GO:0055075 potassium ion homeostasis(GO:0055075)
0.1 0.2 GO:0016046 detection of fungus(GO:0016046)
0.1 0.2 GO:0010394 homogalacturonan biosynthetic process(GO:0010289) homogalacturonan metabolic process(GO:0010394)
0.1 0.2 GO:0032963 collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259)
0.1 0.2 GO:0042144 regulation of vacuole fusion, non-autophagic(GO:0032889) vacuole fusion, non-autophagic(GO:0042144)
0.1 0.8 GO:0018230 peptidyl-L-cysteine S-palmitoylation(GO:0018230) peptidyl-S-diacylglycerol-L-cysteine biosynthetic process from peptidyl-cysteine(GO:0018231)
0.1 0.1 GO:0080051 cutin transport(GO:0080051)
0.1 0.2 GO:1904356 regulation of telomere maintenance via telomerase(GO:0032210) regulation of telomere maintenance via telomere lengthening(GO:1904356) negative regulation of DNA biosynthetic process(GO:2000279)
0.1 0.2 GO:0015812 gamma-aminobutyric acid transport(GO:0015812)
0.1 0.5 GO:0009088 threonine biosynthetic process(GO:0009088)
0.1 0.2 GO:0034414 tRNA 3'-trailer cleavage, endonucleolytic(GO:0034414)
0.1 0.2 GO:2000039 regulation of trichome morphogenesis(GO:2000039)
0.0 0.2 GO:0030203 aminoglycan biosynthetic process(GO:0006023) glycosaminoglycan biosynthetic process(GO:0006024) UDP-glucuronate biosynthetic process(GO:0006065) glycosaminoglycan metabolic process(GO:0030203)
0.0 0.4 GO:0015804 neutral amino acid transport(GO:0015804)
0.0 0.0 GO:0070982 L-asparagine biosynthetic process(GO:0070981) L-asparagine metabolic process(GO:0070982)
0.0 0.2 GO:0046208 spermine catabolic process(GO:0046208)
0.0 0.8 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.0 0.1 GO:0010683 tricyclic triterpenoid metabolic process(GO:0010683)
0.0 0.1 GO:0042770 signal transduction in response to DNA damage(GO:0042770) regulation of DNA damage checkpoint(GO:2000001)
0.0 0.2 GO:0055073 cadmium ion homeostasis(GO:0055073)
0.0 0.2 GO:0019586 uronic acid metabolic process(GO:0006063) galacturonate metabolic process(GO:0019586)
0.0 0.2 GO:0060359 response to ammonium ion(GO:0060359)
0.0 0.2 GO:0097502 mannosylation(GO:0097502)
0.0 0.2 GO:0090069 regulation of ribosome biogenesis(GO:0090069)
0.0 0.3 GO:1901642 nucleoside transmembrane transport(GO:1901642)
0.0 0.2 GO:0006427 histidyl-tRNA aminoacylation(GO:0006427)
0.0 0.3 GO:0071585 detoxification of cadmium ion(GO:0071585)
0.0 0.2 GO:0006809 nitric oxide biosynthetic process(GO:0006809)
0.0 0.2 GO:0010255 glucose mediated signaling pathway(GO:0010255)
0.0 0.2 GO:0006821 chloride transport(GO:0006821)
0.0 0.1 GO:0018874 benzoate metabolic process(GO:0018874)
0.0 0.4 GO:0052548 negative regulation of endopeptidase activity(GO:0010951) regulation of endopeptidase activity(GO:0052548)
0.0 0.1 GO:2000058 protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:0042787) regulation of protein ubiquitination involved in ubiquitin-dependent protein catabolic process(GO:2000058)
0.0 0.2 GO:1902457 negative regulation of stomatal opening(GO:1902457)
0.0 0.2 GO:0010232 vascular transport(GO:0010232) phloem transport(GO:0010233)
0.0 0.5 GO:0009641 shade avoidance(GO:0009641)
0.0 0.2 GO:2000580 regulation of microtubule motor activity(GO:2000574) positive regulation of microtubule motor activity(GO:2000576) regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000580) positive regulation of ATP-dependent microtubule motor activity, plus-end-directed(GO:2000582)
0.0 0.3 GO:0006086 acetyl-CoA biosynthetic process from pyruvate(GO:0006086)
0.0 0.3 GO:0010358 leaf shaping(GO:0010358)
0.0 0.2 GO:0035494 SNARE complex disassembly(GO:0035494)
0.0 0.1 GO:0031054 pre-miRNA processing(GO:0031054)
0.0 0.1 GO:0002009 establishment of planar polarity(GO:0001736) morphogenesis of a polarized epithelium(GO:0001738) morphogenesis of an epithelium(GO:0002009) tissue morphogenesis(GO:0048729)
0.0 0.5 GO:0005987 sucrose catabolic process(GO:0005987)
0.0 0.2 GO:0048480 stigma development(GO:0048480)
0.0 0.9 GO:0010187 negative regulation of seed germination(GO:0010187)
0.0 0.2 GO:0010376 stomatal complex formation(GO:0010376)
0.0 0.0 GO:0010959 regulation of metal ion transport(GO:0010959)
0.0 0.2 GO:1902626 assembly of large subunit precursor of preribosome(GO:1902626)
0.0 0.1 GO:0006424 glutamyl-tRNA aminoacylation(GO:0006424)
0.0 0.3 GO:0045836 positive regulation of meiotic nuclear division(GO:0045836)
0.0 0.2 GO:0006011 UDP-glucose metabolic process(GO:0006011)
0.0 0.1 GO:0048577 negative regulation of short-day photoperiodism, flowering(GO:0048577)
0.0 0.1 GO:0006361 transcription initiation from RNA polymerase I promoter(GO:0006361)
0.0 1.1 GO:0006012 galactose metabolic process(GO:0006012)
0.0 0.1 GO:0048657 anther wall tapetum formation(GO:0048656) anther wall tapetum cell differentiation(GO:0048657)
0.0 0.5 GO:0008214 protein demethylation(GO:0006482) protein dealkylation(GO:0008214) histone demethylation(GO:0016577) histone lysine demethylation(GO:0070076)
0.0 0.2 GO:0035627 ceramide transport(GO:0035627)
0.0 0.4 GO:0000463 maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000463)
0.0 0.2 GO:0014074 response to purine-containing compound(GO:0014074)
0.0 0.1 GO:0060211 regulation of nuclear-transcribed mRNA poly(A) tail shortening(GO:0060211) regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay(GO:1900151)
0.0 0.2 GO:1902456 regulation of stomatal opening(GO:1902456)
0.0 0.1 GO:0090603 sieve element differentiation(GO:0090603)
0.0 0.2 GO:0080165 callose deposition in phloem sieve plate(GO:0080165)
0.0 0.3 GO:0006559 L-phenylalanine catabolic process(GO:0006559) erythrose 4-phosphate/phosphoenolpyruvate family amino acid catabolic process(GO:1902222)
0.0 0.2 GO:1901004 ubiquinone-6 metabolic process(GO:1901004) ubiquinone-6 biosynthetic process(GO:1901006)
0.0 0.3 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0 0.4 GO:0006621 protein retention in ER lumen(GO:0006621)
0.0 0.1 GO:0046464 triglyceride catabolic process(GO:0019433) neutral lipid catabolic process(GO:0046461) acylglycerol catabolic process(GO:0046464)
0.0 0.1 GO:0000455 enzyme-directed rRNA pseudouridine synthesis(GO:0000455)
0.0 0.3 GO:0010098 suspensor development(GO:0010098)
0.0 0.1 GO:0010288 response to lead ion(GO:0010288)
0.0 0.2 GO:0098543 detection of bacterium(GO:0016045) detection of other organism(GO:0098543)
0.0 0.5 GO:0002183 cytoplasmic translational initiation(GO:0002183)
0.0 0.3 GO:0051365 cellular response to potassium ion starvation(GO:0051365)
0.0 0.3 GO:0016926 protein desumoylation(GO:0016926)
0.0 0.3 GO:0006570 tyrosine metabolic process(GO:0006570)
0.0 0.1 GO:0045764 positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764)
0.0 0.2 GO:0006107 oxaloacetate metabolic process(GO:0006107)
0.0 0.3 GO:0042753 positive regulation of circadian rhythm(GO:0042753)
0.0 0.1 GO:0034080 CENP-A containing nucleosome assembly(GO:0034080) CENP-A containing chromatin organization(GO:0061641)
0.0 0.1 GO:0048442 sepal development(GO:0048442) flower calyx development(GO:0048464)
0.0 0.3 GO:0031204 posttranslational protein targeting to membrane, translocation(GO:0031204)
0.0 0.1 GO:0080024 indolebutyric acid metabolic process(GO:0080024)
0.0 0.0 GO:0010272 response to silver ion(GO:0010272) response to cycloheximide(GO:0046898) cellular response to external biotic stimulus(GO:0071217) response to ketone(GO:1901654)
0.0 0.2 GO:0015969 guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035)
0.0 0.1 GO:0009233 menaquinone metabolic process(GO:0009233) menaquinone biosynthetic process(GO:0009234)
0.0 0.6 GO:0010072 primary shoot apical meristem specification(GO:0010072)
0.0 0.2 GO:0009954 proximal/distal pattern formation(GO:0009954)
0.0 0.3 GO:0009942 longitudinal axis specification(GO:0009942)
0.0 0.1 GO:0046713 borate transport(GO:0046713)
0.0 0.4 GO:0045995 regulation of embryonic development(GO:0045995)
0.0 0.9 GO:0010252 auxin homeostasis(GO:0010252)
0.0 0.4 GO:0010413 glucuronoxylan metabolic process(GO:0010413) glucuronoxylan biosynthetic process(GO:0010417)
0.0 1.5 GO:0009631 cold acclimation(GO:0009631)
0.0 0.1 GO:0017145 stem cell division(GO:0017145)
0.0 0.1 GO:0048587 regulation of short-day photoperiodism, flowering(GO:0048587)
0.0 0.2 GO:0010306 rhamnogalacturonan II biosynthetic process(GO:0010306) rhamnogalacturonan II metabolic process(GO:0010396)
0.0 0.1 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.0 0.1 GO:0006212 thymine catabolic process(GO:0006210) uracil catabolic process(GO:0006212) beta-alanine biosynthetic process(GO:0019483) thymine metabolic process(GO:0019859) uracil metabolic process(GO:0019860)
0.0 0.2 GO:0010230 alternative respiration(GO:0010230)
0.0 0.1 GO:0051289 cysteine biosynthetic process via cystathionine(GO:0019343) protein homotetramerization(GO:0051289)
0.0 0.5 GO:0045338 farnesyl diphosphate metabolic process(GO:0045338)
0.0 0.6 GO:0010152 pollen maturation(GO:0010152)
0.0 0.3 GO:0006490 oligosaccharide-lipid intermediate biosynthetic process(GO:0006490)
0.0 0.1 GO:0019287 isopentenyl diphosphate biosynthetic process, mevalonate pathway(GO:0019287)
0.0 0.1 GO:0002943 tRNA dihydrouridine synthesis(GO:0002943)
0.0 0.2 GO:0046247 carotene catabolic process(GO:0016121) terpene catabolic process(GO:0046247)
0.0 0.1 GO:0080001 mucilage extrusion from seed coat(GO:0080001)
0.0 0.5 GO:0034032 coenzyme A metabolic process(GO:0015936) nucleoside bisphosphate metabolic process(GO:0033865) ribonucleoside bisphosphate metabolic process(GO:0033875) purine nucleoside bisphosphate metabolic process(GO:0034032)
0.0 0.3 GO:0010158 abaxial cell fate specification(GO:0010158)
0.0 0.1 GO:0015739 sialic acid transport(GO:0015739)
0.0 0.1 GO:0010454 negative regulation of cell fate specification(GO:0009996) negative regulation of trichoblast fate specification(GO:0010062) negative regulation of cell fate commitment(GO:0010454) negative regulation of plant epidermal cell differentiation(GO:1903889)
0.0 0.0 GO:0018342 protein prenylation(GO:0018342) prenylation(GO:0097354)
0.0 0.2 GO:0031222 arabinan catabolic process(GO:0031222)
0.0 0.1 GO:0009727 detection of ethylene stimulus(GO:0009727)
0.0 0.7 GO:0009691 cytokinin biosynthetic process(GO:0009691)
0.0 0.1 GO:0043162 ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway(GO:0043162)
0.0 0.3 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.1 GO:0035970 peptidyl-threonine dephosphorylation(GO:0035970)
0.0 0.3 GO:0006878 cellular copper ion homeostasis(GO:0006878)
0.0 0.1 GO:0006527 arginine catabolic process(GO:0006527)
0.0 0.6 GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)(GO:0000462)
0.0 0.0 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.0 0.1 GO:0000082 G1/S transition of mitotic cell cycle(GO:0000082)
0.0 0.6 GO:0010268 brassinosteroid homeostasis(GO:0010268)
0.0 0.9 GO:0006623 protein targeting to vacuole(GO:0006623) protein localization to vacuole(GO:0072665) establishment of protein localization to vacuole(GO:0072666)
0.0 0.7 GO:0000028 ribosomal small subunit assembly(GO:0000028)
0.0 0.8 GO:0010218 response to far red light(GO:0010218)
0.0 0.3 GO:0010052 guard cell differentiation(GO:0010052)
0.0 0.2 GO:0010103 stomatal complex morphogenesis(GO:0010103)
0.0 0.3 GO:0006574 valine catabolic process(GO:0006574)
0.0 0.7 GO:0010499 proteasomal ubiquitin-independent protein catabolic process(GO:0010499)
0.0 0.3 GO:0009113 purine nucleobase biosynthetic process(GO:0009113)
0.0 1.6 GO:0048767 root hair elongation(GO:0048767)
0.0 0.1 GO:0005980 glycogen catabolic process(GO:0005980)
0.0 0.1 GO:0042891 tetracycline transport(GO:0015904) antibiotic transport(GO:0042891)
0.0 0.2 GO:0010044 response to aluminum ion(GO:0010044)
0.0 0.1 GO:0090506 axillary shoot meristem initiation(GO:0090506)
0.0 0.4 GO:0015706 nitrate transport(GO:0015706)
0.0 0.1 GO:0048358 mucilage pectin biosynthetic process(GO:0048358)
0.0 0.1 GO:0042724 thiamine biosynthetic process(GO:0009228) thiamine-containing compound biosynthetic process(GO:0042724)
0.0 0.1 GO:0043462 regulation of ATPase activity(GO:0043462)
0.0 0.1 GO:0055070 copper ion homeostasis(GO:0055070)
0.0 0.5 GO:0030042 actin filament depolymerization(GO:0030042)
0.0 0.7 GO:0009825 multidimensional cell growth(GO:0009825)
0.0 0.3 GO:0015780 nucleotide-sugar transport(GO:0015780)
0.0 0.1 GO:1900056 negative regulation of leaf senescence(GO:1900056)
0.0 0.1 GO:0070072 vacuolar proton-transporting V-type ATPase complex assembly(GO:0070072)
0.0 0.2 GO:0010188 response to microbial phytotoxin(GO:0010188)
0.0 0.1 GO:0030322 stabilization of membrane potential(GO:0030322)
0.0 0.2 GO:0071051 polyadenylation-dependent snoRNA 3'-end processing(GO:0071051)
0.0 0.2 GO:1904030 negative regulation of cyclin-dependent protein serine/threonine kinase activity(GO:0045736) negative regulation of cyclin-dependent protein kinase activity(GO:1904030)
0.0 0.1 GO:0006620 posttranslational protein targeting to membrane(GO:0006620)
0.0 0.1 GO:0034329 cell-cell junction assembly(GO:0007043) cell junction assembly(GO:0034329) cell junction organization(GO:0034330) cell-cell junction organization(GO:0045216)
0.0 0.1 GO:0010508 positive regulation of autophagy(GO:0010508)
0.0 0.1 GO:0033512 lysine catabolic process(GO:0006554) L-lysine catabolic process to acetyl-CoA(GO:0019474) L-lysine catabolic process(GO:0019477) L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-lysine metabolic process(GO:0046440)
0.0 0.1 GO:0048451 petal formation(GO:0048451)
0.0 0.1 GO:0010422 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.7 GO:0045168 cell-cell signaling involved in cell fate commitment(GO:0045168)
0.0 0.2 GO:0036065 fucosylation(GO:0036065)
0.0 0.1 GO:0080187 floral organ senescence(GO:0080187)
0.0 0.1 GO:0019365 pyridine nucleotide salvage(GO:0019365)
0.0 0.2 GO:0080183 response to photooxidative stress(GO:0080183)
0.0 0.3 GO:0019374 galactolipid metabolic process(GO:0019374)
0.0 0.1 GO:0080168 abscisic acid transport(GO:0080168)
0.0 0.2 GO:0050665 hydrogen peroxide biosynthetic process(GO:0050665)
0.0 1.0 GO:0006972 hyperosmotic response(GO:0006972)
0.0 0.8 GO:0006749 glutathione metabolic process(GO:0006749)
0.0 0.0 GO:0010444 guard mother cell differentiation(GO:0010444)
0.0 0.1 GO:0019856 pyrimidine nucleobase biosynthetic process(GO:0019856)
0.0 0.3 GO:0036297 interstrand cross-link repair(GO:0036297)
0.0 0.1 GO:0050482 icosanoid secretion(GO:0032309) acid secretion(GO:0046717) arachidonic acid secretion(GO:0050482) icosanoid transport(GO:0071715) fatty acid derivative transport(GO:1901571) arachidonate transport(GO:1903963)
0.0 0.1 GO:0015689 molybdate ion transport(GO:0015689)
0.0 0.1 GO:0000212 meiotic spindle organization(GO:0000212)
0.0 0.0 GO:0071421 manganese ion transmembrane transport(GO:0071421)
0.0 0.1 GO:0010113 negative regulation of systemic acquired resistance(GO:0010113)
0.0 0.1 GO:0052546 cell wall pectin metabolic process(GO:0052546)
0.0 0.1 GO:0015846 polyamine transport(GO:0015846)
0.0 0.2 GO:0006121 mitochondrial electron transport, succinate to ubiquinone(GO:0006121)
0.0 0.2 GO:1900057 positive regulation of leaf senescence(GO:1900057)
0.0 0.3 GO:0009934 regulation of meristem structural organization(GO:0009934)
0.0 0.2 GO:0006826 iron ion transport(GO:0006826)
0.0 0.1 GO:0048445 carpel morphogenesis(GO:0048445)
0.0 0.1 GO:0009647 skotomorphogenesis(GO:0009647)
0.0 0.3 GO:0051260 protein homooligomerization(GO:0051260)
0.0 0.0 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.0 0.0 GO:0000492 box C/D snoRNP assembly(GO:0000492)
0.0 0.3 GO:0015850 organic hydroxy compound transport(GO:0015850)
0.0 0.0 GO:0006148 inosine catabolic process(GO:0006148) inosine metabolic process(GO:0046102)
0.0 0.2 GO:0048766 root hair initiation(GO:0048766)
0.0 0.1 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.1 GO:0010371 regulation of gibberellin biosynthetic process(GO:0010371)
0.0 0.0 GO:0010507 negative regulation of autophagy(GO:0010507)
0.0 0.4 GO:0071472 cellular response to salt stress(GO:0071472)
0.0 0.2 GO:0080156 mitochondrial mRNA modification(GO:0080156)
0.0 0.0 GO:0009584 detection of visible light(GO:0009584)
0.0 0.5 GO:0042255 ribosome assembly(GO:0042255)
0.0 0.0 GO:0071244 cellular response to carbon dioxide(GO:0071244)
0.0 0.5 GO:0010054 trichoblast differentiation(GO:0010054)
0.0 0.5 GO:0048510 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 0.1 GO:0000919 cell plate assembly(GO:0000919)
0.0 0.0 GO:0070979 protein K11-linked ubiquitination(GO:0070979)
0.0 0.1 GO:0035964 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.0 0.2 GO:0051050 positive regulation of transport(GO:0051050)
0.0 0.0 GO:0010024 phytochromobilin biosynthetic process(GO:0010024) phytochromobilin metabolic process(GO:0051202)
0.0 0.1 GO:1903830 magnesium ion transmembrane transport(GO:1903830)
0.0 0.1 GO:1901656 glycoside transport(GO:1901656)
0.0 0.1 GO:1901703 protein localization involved in auxin polar transport(GO:1901703)
0.0 0.4 GO:0007186 G-protein coupled receptor signaling pathway(GO:0007186)
0.0 0.1 GO:0006102 isocitrate metabolic process(GO:0006102)
0.0 0.1 GO:0000913 preprophase band assembly(GO:0000913) cytokinesis, site selection(GO:0007105) mitotic cytokinesis, site selection(GO:1902408)
0.0 0.2 GO:0009901 anther dehiscence(GO:0009901)
0.0 0.3 GO:0009768 photosynthesis, light harvesting in photosystem I(GO:0009768)
0.0 0.1 GO:0018344 protein geranylgeranylation(GO:0018344)
0.0 0.0 GO:0071035 polyadenylation-dependent RNA catabolic process(GO:0043633) polyadenylation-dependent ncRNA catabolic process(GO:0043634) nuclear ncRNA surveillance(GO:0071029) nuclear polyadenylation-dependent rRNA catabolic process(GO:0071035) nuclear polyadenylation-dependent ncRNA catabolic process(GO:0071046)
0.0 0.1 GO:0007023 post-chaperonin tubulin folding pathway(GO:0007023)
0.0 0.2 GO:0006002 fructose 6-phosphate metabolic process(GO:0006002)
0.0 0.1 GO:0009052 pentose-phosphate shunt, non-oxidative branch(GO:0009052)
0.0 0.1 GO:0010588 cotyledon vascular tissue pattern formation(GO:0010588)
0.0 0.1 GO:0009807 lignan metabolic process(GO:0009806) lignan biosynthetic process(GO:0009807)
0.0 0.5 GO:0002181 cytoplasmic translation(GO:0002181)
0.0 0.2 GO:2000008 regulation of protein localization to cell surface(GO:2000008)
0.0 0.1 GO:0031929 TOR signaling(GO:0031929)
0.0 0.5 GO:0042752 regulation of circadian rhythm(GO:0042752)
0.0 0.5 GO:0009749 response to glucose(GO:0009749)
0.0 0.1 GO:0050879 circumnutation(GO:0010031) multicellular organismal movement(GO:0050879)
0.0 0.0 GO:0046621 negative regulation of organ growth(GO:0046621)
0.0 0.0 GO:0033528 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.0 0.5 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.2 GO:0006722 triterpenoid metabolic process(GO:0006722)
0.0 0.2 GO:0016558 protein import into peroxisome matrix(GO:0016558)
0.0 0.0 GO:0030856 regulation of epithelial cell differentiation(GO:0030856) regulation of epidermal cell differentiation(GO:0045604) regulation of epidermis development(GO:0045682)
0.0 0.1 GO:0051046 regulation of exocytosis(GO:0017157) regulation of secretion(GO:0051046) regulation of secretion by cell(GO:1903530)
0.0 0.1 GO:0010120 toxin biosynthetic process(GO:0009403) indole phytoalexin biosynthetic process(GO:0009700) camalexin biosynthetic process(GO:0010120) indole phytoalexin metabolic process(GO:0046217) phytoalexin metabolic process(GO:0052314) phytoalexin biosynthetic process(GO:0052315) camalexin metabolic process(GO:0052317)
0.0 0.2 GO:0051123 RNA polymerase II transcriptional preinitiation complex assembly(GO:0051123)
0.0 0.2 GO:1900865 chloroplast RNA modification(GO:1900865)
0.0 0.4 GO:0006730 one-carbon metabolic process(GO:0006730)
0.0 0.1 GO:0033619 membrane protein proteolysis(GO:0033619)
0.0 0.2 GO:0007008 outer mitochondrial membrane organization(GO:0007008) protein import into mitochondrial outer membrane(GO:0045040)
0.0 0.2 GO:0006108 malate metabolic process(GO:0006108)
0.0 0.1 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.0 0.1 GO:0001678 cellular glucose homeostasis(GO:0001678)
0.0 0.0 GO:0010336 gibberellic acid homeostasis(GO:0010336)
0.0 0.0 GO:0007019 microtubule depolymerization(GO:0007019)
0.0 0.0 GO:0046479 glycosylceramide metabolic process(GO:0006677) glucosylceramide metabolic process(GO:0006678) glucosylceramide catabolic process(GO:0006680) glycosphingolipid metabolic process(GO:0006687) glycolipid catabolic process(GO:0019377) glycosylceramide catabolic process(GO:0046477) glycosphingolipid catabolic process(GO:0046479) ceramide catabolic process(GO:0046514)
0.0 0.1 GO:0043248 proteasome assembly(GO:0043248)
0.0 0.3 GO:0006505 GPI anchor metabolic process(GO:0006505) GPI anchor biosynthetic process(GO:0006506)
0.0 0.1 GO:0046051 UTP biosynthetic process(GO:0006228) UTP metabolic process(GO:0046051)
0.0 0.3 GO:0007030 Golgi organization(GO:0007030)
0.0 0.1 GO:0045962 positive regulation of development, heterochronic(GO:0045962)
0.0 0.2 GO:0006914 autophagy(GO:0006914)
0.0 0.0 GO:0007095 mitotic G2 DNA damage checkpoint(GO:0007095) G2 DNA damage checkpoint(GO:0031572)
0.0 0.1 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348) positive regulation of cell wall organization or biogenesis(GO:1903340)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 GO:0031314 extrinsic component of mitochondrial inner membrane(GO:0031314)
0.1 0.3 GO:0016328 lateral plasma membrane(GO:0016328)
0.1 0.4 GO:0042788 polysomal ribosome(GO:0042788)
0.1 0.3 GO:0043240 Fanconi anaemia nuclear complex(GO:0043240)
0.1 0.7 GO:0000813 ESCRT I complex(GO:0000813)
0.1 1.4 GO:0031012 extracellular matrix(GO:0031012)
0.1 0.2 GO:0000015 phosphopyruvate hydratase complex(GO:0000015)
0.1 0.4 GO:0031205 endoplasmic reticulum Sec complex(GO:0031205)
0.1 0.2 GO:0071556 integral component of lumenal side of endoplasmic reticulum membrane(GO:0071556) lumenal side of endoplasmic reticulum membrane(GO:0098553) lumenal side of membrane(GO:0098576)
0.1 0.2 GO:0034274 Atg12-Atg5-Atg16 complex(GO:0034274)
0.1 0.6 GO:0017119 Golgi transport complex(GO:0017119)
0.1 0.2 GO:0016323 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.1 0.3 GO:0000214 tRNA-intron endonuclease complex(GO:0000214)
0.1 0.3 GO:0005687 U4 snRNP(GO:0005687)
0.1 0.2 GO:0009514 glyoxysome(GO:0009514)
0.1 0.3 GO:0034098 VCP-NPL4-UFD1 AAA ATPase complex(GO:0034098)
0.0 0.4 GO:0035619 root hair tip(GO:0035619)
0.0 0.3 GO:0005776 autophagosome(GO:0005776)
0.0 0.1 GO:0030689 Noc complex(GO:0030689)
0.0 0.5 GO:0008180 COP9 signalosome(GO:0008180)
0.0 0.1 GO:1990415 Pex17p-Pex14p docking complex(GO:1990415) peroxisomal importomer complex(GO:1990429)
0.0 0.3 GO:0032541 cortical endoplasmic reticulum(GO:0032541)
0.0 0.5 GO:0019774 proteasome core complex, beta-subunit complex(GO:0019774)
0.0 0.2 GO:0030286 dynein complex(GO:0030286)
0.0 0.2 GO:0005672 transcription factor TFIIA complex(GO:0005672)
0.0 0.4 GO:0072546 ER membrane protein complex(GO:0072546)
0.0 0.5 GO:0005769 early endosome(GO:0005769)
0.0 0.1 GO:0097196 Shu complex(GO:0097196)
0.0 0.1 GO:0005712 chiasma(GO:0005712)
0.0 0.2 GO:0033180 proton-transporting V-type ATPase, V1 domain(GO:0033180)
0.0 0.2 GO:0000812 Swr1 complex(GO:0000812)
0.0 0.5 GO:0000176 nuclear exosome (RNase complex)(GO:0000176)
0.0 1.4 GO:0005764 lysosome(GO:0005764)
0.0 0.1 GO:0031021 interphase microtubule organizing center(GO:0031021)
0.0 0.2 GO:0000808 origin recognition complex(GO:0000808) nuclear origin of replication recognition complex(GO:0005664)
0.0 0.4 GO:0005758 mitochondrial intermembrane space(GO:0005758)
0.0 0.1 GO:0034515 proteasome storage granule(GO:0034515)
0.0 0.4 GO:0005885 Arp2/3 protein complex(GO:0005885)
0.0 0.1 GO:0055038 recycling endosome membrane(GO:0055038)
0.0 0.2 GO:0000407 pre-autophagosomal structure(GO:0000407)
0.0 0.1 GO:0033263 CORVET complex(GO:0033263)
0.0 0.1 GO:0097361 CIA complex(GO:0097361)
0.0 0.1 GO:0030137 COPI-coated vesicle(GO:0030137)
0.0 0.1 GO:0005854 nascent polypeptide-associated complex(GO:0005854)
0.0 0.5 GO:0005852 eukaryotic translation initiation factor 3 complex(GO:0005852)
0.0 0.2 GO:0009513 etioplast(GO:0009513)
0.0 0.1 GO:0044613 nuclear pore central transport channel(GO:0044613)
0.0 0.1 GO:0005967 mitochondrial pyruvate dehydrogenase complex(GO:0005967)
0.0 0.0 GO:0009501 amyloplast(GO:0009501)
0.0 0.2 GO:0005956 protein kinase CK2 complex(GO:0005956)
0.0 0.2 GO:0030131 clathrin adaptor complex(GO:0030131)
0.0 0.1 GO:0031390 Ctf18 RFC-like complex(GO:0031390)
0.0 0.4 GO:0010494 cytoplasmic stress granule(GO:0010494)
0.0 1.9 GO:0022627 cytosolic small ribosomal subunit(GO:0022627)
0.0 0.2 GO:0001401 mitochondrial sorting and assembly machinery complex(GO:0001401)
0.0 0.1 GO:0031080 nuclear pore outer ring(GO:0031080)
0.0 0.4 GO:0000781 chromosome, telomeric region(GO:0000781)
0.0 0.2 GO:0005677 chromatin silencing complex(GO:0005677)
0.0 0.2 GO:0005832 chaperonin-containing T-complex(GO:0005832)
0.0 0.1 GO:0016281 eukaryotic translation initiation factor 4F complex(GO:0016281)
0.0 1.5 GO:0000138 Golgi trans cisterna(GO:0000138)
0.0 0.9 GO:0005797 Golgi medial cisterna(GO:0005797)
0.0 0.5 GO:1903293 protein serine/threonine phosphatase complex(GO:0008287) phosphatase complex(GO:1903293)
0.0 0.2 GO:0045273 respiratory chain complex II(GO:0045273) succinate dehydrogenase complex(GO:0045281)
0.0 1.1 GO:0005615 extracellular space(GO:0005615)
0.0 0.7 GO:0009707 chloroplast outer membrane(GO:0009707)
0.0 0.1 GO:0009346 citrate lyase complex(GO:0009346)
0.0 2.2 GO:0046658 anchored component of plasma membrane(GO:0046658)
0.0 1.1 GO:0090575 RNA polymerase II transcription factor complex(GO:0090575)
0.0 1.7 GO:0022625 cytosolic large ribosomal subunit(GO:0022625)
0.0 0.0 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.0 0.1 GO:0044450 microtubule organizing center part(GO:0044450)
0.0 1.5 GO:0080008 Cul4-RING E3 ubiquitin ligase complex(GO:0080008)
0.0 0.1 GO:0009360 DNA polymerase III complex(GO:0009360)
0.0 0.2 GO:0000148 1,3-beta-D-glucan synthase complex(GO:0000148)
0.0 0.0 GO:0005853 eukaryotic translation elongation factor 1 complex(GO:0005853)
0.0 0.1 GO:0016593 Cdc73/Paf1 complex(GO:0016593)
0.0 0.2 GO:0005839 proteasome core complex(GO:0005839)
0.0 0.1 GO:0031082 BLOC complex(GO:0031082) BLOC-1 complex(GO:0031083)
0.0 0.3 GO:0031228 integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228)
0.0 0.0 GO:0000178 exosome (RNase complex)(GO:0000178)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 GO:0030410 nicotianamine synthase activity(GO:0030410)
0.2 0.9 GO:0050162 oxalate oxidase activity(GO:0050162)
0.2 0.8 GO:0004349 glutamate 5-kinase activity(GO:0004349) glutamate-5-semialdehyde dehydrogenase activity(GO:0004350)
0.2 1.5 GO:0090447 glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447)
0.2 0.5 GO:0080045 quercetin 3'-O-glucosyltransferase activity(GO:0080045)
0.2 3.0 GO:0016157 sucrose synthase activity(GO:0016157)
0.2 0.2 GO:0016767 geranylgeranyl-diphosphate geranylgeranyltransferase activity(GO:0016767)
0.2 0.8 GO:0015186 L-glutamine transmembrane transporter activity(GO:0015186)
0.2 0.6 GO:0004556 alpha-amylase activity(GO:0004556)
0.1 0.4 GO:0052640 salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640)
0.1 0.6 GO:0019172 glyoxalase III activity(GO:0019172)
0.1 0.6 GO:0080103 4-methylthiopropyl glucosinolate S-oxygenase activity(GO:0080103)
0.1 0.5 GO:0004617 phosphoglycerate dehydrogenase activity(GO:0004617)
0.1 0.4 GO:0005080 MAP-kinase scaffold activity(GO:0005078) protein kinase C binding(GO:0005080) protein complex scaffold(GO:0032947) signaling adaptor activity(GO:0035591)
0.1 0.4 GO:0004013 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.1 0.5 GO:0036218 dTTP diphosphatase activity(GO:0036218)
0.1 1.4 GO:0016723 ferric-chelate reductase activity(GO:0000293) oxidoreductase activity, oxidizing metal ions, NAD or NADP as acceptor(GO:0016723)
0.1 0.7 GO:0019904 protein domain specific binding(GO:0019904)
0.1 0.4 GO:0008395 steroid hydroxylase activity(GO:0008395)
0.1 0.3 GO:0016277 [myelin basic protein]-arginine N-methyltransferase activity(GO:0016277)
0.1 0.3 GO:0008519 ammonium transmembrane transporter activity(GO:0008519)
0.1 0.3 GO:0008936 nicotinamidase activity(GO:0008936)
0.1 0.5 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.1 0.8 GO:0047216 inositol 3-alpha-galactosyltransferase activity(GO:0047216)
0.1 0.6 GO:0045549 9-cis-epoxycarotenoid dioxygenase activity(GO:0045549)
0.1 0.6 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.1 0.4 GO:0031957 very long-chain fatty acid-CoA ligase activity(GO:0031957)
0.1 0.5 GO:0051996 farnesyl-diphosphate farnesyltransferase activity(GO:0004310) squalene synthase activity(GO:0051996)
0.1 0.4 GO:0016174 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.1 0.3 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.1 0.2 GO:0070003 threonine-type endopeptidase activity(GO:0004298) threonine-type peptidase activity(GO:0070003)
0.1 0.6 GO:0022833 mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833)
0.1 0.5 GO:0001872 (1->3)-beta-D-glucan binding(GO:0001872)
0.1 0.3 GO:0080097 L-tryptophan:pyruvate aminotransferase activity(GO:0080097)
0.1 0.2 GO:0019776 Atg8 ligase activity(GO:0019776) Atg8 activating enzyme activity(GO:0019779)
0.1 0.3 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 0.4 GO:0004028 3-chloroallyl aldehyde dehydrogenase activity(GO:0004028)
0.1 0.3 GO:0019784 NEDD8-specific protease activity(GO:0019784)
0.1 0.6 GO:0010011 auxin binding(GO:0010011)
0.1 0.2 GO:0009671 nitrate:proton symporter activity(GO:0009671)
0.1 0.2 GO:0004634 phosphopyruvate hydratase activity(GO:0004634)
0.1 0.2 GO:1990883 rRNA cytidine N-acetyltransferase activity(GO:1990883)
0.1 1.3 GO:0015086 cadmium ion transmembrane transporter activity(GO:0015086)
0.1 0.4 GO:0015369 calcium:proton antiporter activity(GO:0015369)
0.1 0.3 GO:0004781 sulfate adenylyltransferase (ATP) activity(GO:0004781)
0.1 0.3 GO:0005093 Rab GDP-dissociation inhibitor activity(GO:0005093)
0.1 0.5 GO:0046975 histone methyltransferase activity (H3-K36 specific)(GO:0046975)
0.1 0.3 GO:0004594 pantothenate kinase activity(GO:0004594)
0.1 0.2 GO:0008517 folic acid transporter activity(GO:0008517)
0.1 0.4 GO:0016426 tRNA (adenine) methyltransferase activity(GO:0016426)
0.1 0.3 GO:0034432 bis(5'-adenosyl)-pentaphosphatase activity(GO:0034432)
0.1 0.2 GO:0004044 amidophosphoribosyltransferase activity(GO:0004044)
0.1 0.5 GO:0015271 outward rectifier potassium channel activity(GO:0015271)
0.1 0.2 GO:0097363 protein O-GlcNAc transferase activity(GO:0097363)
0.1 0.2 GO:0046480 galactolipid galactosyltransferase activity(GO:0046480)
0.1 1.7 GO:0048029 monosaccharide binding(GO:0048029)
0.1 0.4 GO:0018685 alkane 1-monooxygenase activity(GO:0018685)
0.1 0.2 GO:0052628 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628)
0.1 1.0 GO:0022839 calcium activated cation channel activity(GO:0005227) ion gated channel activity(GO:0022839)
0.1 0.8 GO:0015179 L-amino acid transmembrane transporter activity(GO:0015179)
0.1 0.2 GO:0003852 2-isopropylmalate synthase activity(GO:0003852)
0.1 0.3 GO:0004838 L-tyrosine:2-oxoglutarate aminotransferase activity(GO:0004838) L-tyrosine aminotransferase activity(GO:0070547)
0.1 0.2 GO:0070138 ubiquitin-like protein-specific isopeptidase activity(GO:0070138) SUMO-specific isopeptidase activity(GO:0070140)
0.1 0.2 GO:0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity(GO:0000179)
0.1 0.2 GO:0015185 gamma-aminobutyric acid transmembrane transporter activity(GO:0015185)
0.1 0.3 GO:0050734 hydroxycinnamoyltransferase activity(GO:0050734)
0.1 0.2 GO:0042781 3'-tRNA processing endoribonuclease activity(GO:0042781)
0.1 0.3 GO:0050378 UDP-glucuronate 4-epimerase activity(GO:0050378)
0.0 0.1 GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors(GO:0016661)
0.0 0.1 GO:0008963 phospho-N-acetylmuramoyl-pentapeptide-transferase activity(GO:0008963)
0.0 0.8 GO:0019706 protein-cysteine S-palmitoyltransferase activity(GO:0019706) protein-cysteine S-acyltransferase activity(GO:0019707)
0.0 0.7 GO:0004427 inorganic diphosphatase activity(GO:0004427)
0.0 0.0 GO:0042947 glucoside transmembrane transporter activity(GO:0042947)
0.0 0.1 GO:0004742 dihydrolipoyllysine-residue acetyltransferase activity(GO:0004742) S-acetyltransferase activity(GO:0016418)
0.0 0.2 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
0.0 0.2 GO:0030371 translation repressor activity(GO:0030371)
0.0 0.1 GO:0004140 dephospho-CoA kinase activity(GO:0004140)
0.0 0.4 GO:0005086 ARF guanyl-nucleotide exchange factor activity(GO:0005086)
0.0 0.5 GO:0048040 UDP-glucuronate decarboxylase activity(GO:0048040)
0.0 0.3 GO:0003996 acyl-CoA ligase activity(GO:0003996)
0.0 0.3 GO:0080041 ADP-sugar diphosphatase activity(GO:0019144) ADP-ribose pyrophosphohydrolase activity(GO:0080041)
0.0 0.6 GO:0004430 1-phosphatidylinositol 4-kinase activity(GO:0004430)
0.0 0.4 GO:0004869 cysteine-type endopeptidase inhibitor activity(GO:0004869)
0.0 0.2 GO:0004821 histidine-tRNA ligase activity(GO:0004821)
0.0 0.2 GO:0016724 ferroxidase activity(GO:0004322) oxidoreductase activity, oxidizing metal ions, oxygen as acceptor(GO:0016724)
0.0 0.3 GO:0017091 AU-rich element binding(GO:0017091)
0.0 0.4 GO:0015112 nitrate transmembrane transporter activity(GO:0015112)
0.0 0.8 GO:0004564 beta-fructofuranosidase activity(GO:0004564)
0.0 0.9 GO:0003954 NADH dehydrogenase activity(GO:0003954)
0.0 0.2 GO:0047215 indole-3-acetate beta-glucosyltransferase activity(GO:0047215)
0.0 0.4 GO:0003691 double-stranded telomeric DNA binding(GO:0003691)
0.0 0.2 GO:0005457 GDP-fucose transmembrane transporter activity(GO:0005457)
0.0 0.2 GO:0003979 UDP-glucose 6-dehydrogenase activity(GO:0003979)
0.0 0.6 GO:0030955 pyruvate kinase activity(GO:0004743) potassium ion binding(GO:0030955) alkali metal ion binding(GO:0031420)
0.0 0.2 GO:0045502 dynein binding(GO:0045502) dynein intermediate chain binding(GO:0045505) dynein light intermediate chain binding(GO:0051959)
0.0 0.4 GO:0102360 daphnetin 3-O-glucosyltransferase activity(GO:0102360)
0.0 0.2 GO:0035516 oxidative DNA demethylase activity(GO:0035516)
0.0 0.4 GO:0008725 alkylbase DNA N-glycosylase activity(GO:0003905) DNA-3-methyladenine glycosylase activity(GO:0008725) DNA-3-methylbase glycosylase activity(GO:0043733)
0.0 0.8 GO:0052716 hydroquinone:oxygen oxidoreductase activity(GO:0052716)
0.0 0.3 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.1 GO:0000248 C-5 sterol desaturase activity(GO:0000248)
0.0 0.2 GO:0003983 UTP:glucose-1-phosphate uridylyltransferase activity(GO:0003983)
0.0 0.2 GO:1902387 ceramide transporter activity(GO:0035620) sphingolipid transporter activity(GO:0046624) ceramide 1-phosphate binding(GO:1902387) ceramide 1-phosphate transporter activity(GO:1902388)
0.0 0.4 GO:0008526 phosphatidylinositol transporter activity(GO:0008526)
0.0 0.2 GO:0046592 polyamine oxidase activity(GO:0046592)
0.0 0.1 GO:0051019 mitogen-activated protein kinase binding(GO:0051019)
0.0 0.3 GO:0033201 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.0 0.2 GO:0016621 cinnamoyl-CoA reductase activity(GO:0016621)
0.0 0.1 GO:0016618 hydroxypyruvate reductase activity(GO:0016618)
0.0 0.6 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 2.2 GO:0004650 polygalacturonase activity(GO:0004650)
0.0 0.6 GO:0019902 phosphatase binding(GO:0019902)
0.0 0.2 GO:0004376 glycolipid mannosyltransferase activity(GO:0004376)
0.0 0.3 GO:0016161 beta-amylase activity(GO:0016161)
0.0 0.3 GO:0047372 acylglycerol lipase activity(GO:0047372)
0.0 0.4 GO:0030060 L-malate dehydrogenase activity(GO:0030060)
0.0 0.1 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475)
0.0 1.3 GO:0000156 phosphorelay response regulator activity(GO:0000156)
0.0 0.3 GO:0004311 farnesyltranstransferase activity(GO:0004311)
0.0 0.1 GO:0017110 nucleoside-diphosphatase activity(GO:0017110)
0.0 1.4 GO:0030145 manganese ion binding(GO:0030145)
0.0 0.3 GO:0008028 monocarboxylic acid transmembrane transporter activity(GO:0008028)
0.0 0.2 GO:0032266 phosphatidylinositol-3-phosphate binding(GO:0032266)
0.0 0.2 GO:0004738 pyruvate dehydrogenase activity(GO:0004738) pyruvate dehydrogenase (acetyl-transferring) activity(GO:0004739)
0.0 0.2 GO:0008728 GTP diphosphokinase activity(GO:0008728)
0.0 0.1 GO:0017176 phosphatidylinositol N-acetylglucosaminyltransferase activity(GO:0017176)
0.0 0.4 GO:0004629 phospholipase C activity(GO:0004629)
0.0 0.1 GO:0080139 borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139)
0.0 0.3 GO:0047259 glucomannan 4-beta-mannosyltransferase activity(GO:0047259)
0.0 0.1 GO:0008703 5-amino-6-(5-phosphoribosylamino)uracil reductase activity(GO:0008703)
0.0 0.1 GO:0016504 peptidase activator activity(GO:0016504)
0.0 0.2 GO:0003872 6-phosphofructokinase activity(GO:0003872)
0.0 0.2 GO:0016703 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of one atom of oxygen (internal monooxygenases or internal mixed function oxidases)(GO:0016703)
0.0 0.4 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 0.1 GO:0016630 protochlorophyllide reductase activity(GO:0016630)
0.0 0.1 GO:0004751 ribose-5-phosphate isomerase activity(GO:0004751)
0.0 0.1 GO:0005354 galactose transmembrane transporter activity(GO:0005354)
0.0 0.7 GO:0004725 protein tyrosine phosphatase activity(GO:0004725)
0.0 0.6 GO:0008559 xenobiotic-transporting ATPase activity(GO:0008559)
0.0 0.2 GO:0008177 succinate dehydrogenase (ubiquinone) activity(GO:0008177)
0.0 1.6 GO:0043621 protein self-association(GO:0043621)
0.0 0.8 GO:0015205 nucleobase transmembrane transporter activity(GO:0015205)
0.0 0.1 GO:0015136 sialic acid transmembrane transporter activity(GO:0015136)
0.0 0.4 GO:0070122 isopeptidase activity(GO:0070122)
0.0 0.1 GO:0050815 phosphoserine binding(GO:0050815) RNA polymerase II C-terminal domain phosphoserine binding(GO:1990269)
0.0 0.1 GO:0016653 oxidoreductase activity, acting on NAD(P)H, heme protein as acceptor(GO:0016653)
0.0 0.1 GO:0052740 phosphatidylserine 1-acylhydrolase activity(GO:0052739) 1-acyl-2-lysophosphatidylserine acylhydrolase activity(GO:0052740)
0.0 0.4 GO:0015386 potassium:proton antiporter activity(GO:0015386)
0.0 0.1 GO:0005223 intracellular cGMP activated cation channel activity(GO:0005223)
0.0 0.1 GO:0004449 isocitrate dehydrogenase (NAD+) activity(GO:0004449)
0.0 1.6 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.2 GO:0050105 L-gulonolactone oxidase activity(GO:0050105)
0.0 0.1 GO:0004839 ubiquitin activating enzyme activity(GO:0004839)
0.0 0.2 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.0 0.3 GO:0009927 histidine phosphotransfer kinase activity(GO:0009927)
0.0 0.1 GO:0047498 calcium-dependent phospholipase A2 activity(GO:0047498)
0.0 0.7 GO:0015385 sodium:proton antiporter activity(GO:0015385)
0.0 0.1 GO:0003986 acetyl-CoA hydrolase activity(GO:0003986)
0.0 1.4 GO:0001228 transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding(GO:0001228)
0.0 0.1 GO:0042392 sphingosine-1-phosphate phosphatase activity(GO:0042392) lipid phosphatase activity(GO:0042577)
0.0 0.1 GO:0003680 AT DNA binding(GO:0003680)
0.0 0.4 GO:0060090 binding, bridging(GO:0060090)
0.0 0.2 GO:0051184 cofactor transporter activity(GO:0051184)
0.0 0.1 GO:0018708 thiol S-methyltransferase activity(GO:0018708)
0.0 0.1 GO:0047429 nucleoside-triphosphate diphosphatase activity(GO:0047429)
0.0 0.3 GO:0009815 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815)
0.0 0.3 GO:0003978 UDP-glucose 4-epimerase activity(GO:0003978)
0.0 0.2 GO:0008506 sucrose:proton symporter activity(GO:0008506)
0.0 0.1 GO:0004149 dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) succinyltransferase activity(GO:0016748) S-succinyltransferase activity(GO:0016751)
0.0 0.2 GO:0046923 ER retention sequence binding(GO:0046923)
0.0 0.1 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.0 0.2 GO:0010329 auxin efflux transmembrane transporter activity(GO:0010329)
0.0 0.1 GO:0052853 very-long-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052852) long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity(GO:0052853) medium-chain-(S)-2-hydroxy-acid oxidase activity(GO:0052854)
0.0 0.2 GO:0004032 alditol:NADP+ 1-oxidoreductase activity(GO:0004032)
0.0 0.1 GO:0004072 aspartate kinase activity(GO:0004072)
0.0 0.1 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.0 0.3 GO:0047196 long-chain-alcohol O-fatty-acyltransferase activity(GO:0047196)
0.0 0.1 GO:0032977 membrane insertase activity(GO:0032977)
0.0 0.1 GO:0015098 molybdate ion transmembrane transporter activity(GO:0015098)
0.0 0.1 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.0 0.1 GO:0017150 tRNA dihydrouridine synthase activity(GO:0017150)
0.0 0.2 GO:0016849 phosphorus-oxygen lyase activity(GO:0016849)
0.0 0.3 GO:0051879 Hsp90 protein binding(GO:0051879)
0.0 0.1 GO:0042895 tetracycline transporter activity(GO:0008493) toxin transporter activity(GO:0019534) antibiotic transporter activity(GO:0042895)
0.0 0.1 GO:0004046 aminoacylase activity(GO:0004046)
0.0 0.1 GO:0003999 adenine phosphoribosyltransferase activity(GO:0003999)
0.0 0.1 GO:0035197 siRNA binding(GO:0035197)
0.0 0.1 GO:0015603 iron chelate transmembrane transporter activity(GO:0015603) iron-nicotianamine transmembrane transporter activity(GO:0051980)
0.0 0.1 GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity(GO:0004861) protein serine/threonine kinase inhibitor activity(GO:0030291)
0.0 0.5 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.5 GO:0031593 polyubiquitin binding(GO:0031593)
0.0 0.2 GO:0003950 NAD+ ADP-ribosyltransferase activity(GO:0003950)
0.0 0.1 GO:0032791 lead ion binding(GO:0032791)
0.0 0.2 GO:0042389 omega-3 fatty acid desaturase activity(GO:0042389)
0.0 0.7 GO:0015035 protein disulfide oxidoreductase activity(GO:0015035)
0.0 0.4 GO:0019187 beta-1,4-mannosyltransferase activity(GO:0019187) mannan synthase activity(GO:0051753)
0.0 0.0 GO:0004071 aspartate-ammonia ligase activity(GO:0004071)
0.0 1.3 GO:0004722 protein serine/threonine phosphatase activity(GO:0004722)
0.0 0.2 GO:0043424 protein histidine kinase binding(GO:0043424)
0.0 0.1 GO:0004123 cystathionine gamma-lyase activity(GO:0004123)
0.0 0.3 GO:0001085 RNA polymerase II transcription factor binding(GO:0001085)
0.0 0.1 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.1 GO:0015203 polyamine transmembrane transporter activity(GO:0015203)
0.0 0.2 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044)
0.0 0.3 GO:0008308 voltage-gated anion channel activity(GO:0008308)
0.0 0.1 GO:0010285 L,L-diaminopimelate aminotransferase activity(GO:0010285)
0.0 0.3 GO:0045309 protein phosphorylated amino acid binding(GO:0045309) phosphoprotein binding(GO:0051219)
0.0 0.1 GO:0003878 ATP citrate synthase activity(GO:0003878)
0.0 0.2 GO:1901981 phosphatidylinositol phosphate binding(GO:1901981)
0.0 0.1 GO:0016882 cyclo-ligase activity(GO:0016882)
0.0 0.1 GO:0043023 ribosomal large subunit binding(GO:0043023)
0.0 0.2 GO:0033170 DNA clamp loader activity(GO:0003689) protein-DNA loading ATPase activity(GO:0033170)
0.0 0.1 GO:0004806 triglyceride lipase activity(GO:0004806)
0.0 0.1 GO:0010294 abscisic acid glucosyltransferase activity(GO:0010294)
0.0 0.1 GO:0048487 beta-tubulin binding(GO:0048487)
0.0 0.0 GO:0003962 cystathionine gamma-synthase activity(GO:0003962)
0.0 0.0 GO:0047150 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.0 0.1 GO:0004791 thioredoxin-disulfide reductase activity(GO:0004791)
0.0 0.0 GO:0015292 uniporter activity(GO:0015292)
0.0 0.0 GO:0004640 phosphoribosylanthranilate isomerase activity(GO:0004640)
0.0 0.1 GO:0042500 aspartic endopeptidase activity, intramembrane cleaving(GO:0042500)
0.0 0.2 GO:0003843 1,3-beta-D-glucan synthase activity(GO:0003843)
0.0 0.0 GO:0047724 inosine nucleosidase activity(GO:0047724)
0.0 0.2 GO:0042300 beta-amyrin synthase activity(GO:0042300)
0.0 0.1 GO:0004930 G-protein coupled receptor activity(GO:0004930)
0.0 0.4 GO:0004707 MAP kinase activity(GO:0004707)
0.0 0.0 GO:0004348 glucosylceramidase activity(GO:0004348)
0.0 0.1 GO:0004664 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.0 GO:0031956 medium-chain fatty acid-CoA ligase activity(GO:0031956)
0.0 0.1 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.0 0.2 GO:0035064 methylated histone binding(GO:0035064)
0.0 0.3 GO:0004568 chitinase activity(GO:0004568)
0.0 0.0 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.0 0.2 GO:0016251 obsolete general RNA polymerase II transcription factor activity(GO:0016251)
0.0 0.1 GO:0000036 ACP phosphopantetheine attachment site binding involved in fatty acid biosynthetic process(GO:0000036) ACP phosphopantetheine attachment site binding(GO:0044620) prosthetic group binding(GO:0051192)
0.0 0.1 GO:0050062 long-chain-fatty-acyl-CoA reductase activity(GO:0050062)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 PID HIF2PATHWAY HIF-2-alpha transcription factor network
0.1 0.6 PID ECADHERIN NASCENT AJ PATHWAY E-cadherin signaling in the nascent adherens junction
0.1 0.2 SIG CHEMOTAXIS Genes related to chemotaxis
0.1 0.1 ST INTEGRIN SIGNALING PATHWAY Integrin Signaling Pathway
0.1 0.1 PID TCPTP PATHWAY Signaling events mediated by TCPTP
0.1 0.4 PID AP1 PATHWAY AP-1 transcription factor network
0.0 0.1 PID P53 REGULATION PATHWAY p53 pathway
0.0 0.3 PID MTOR 4PATHWAY mTOR signaling pathway
0.0 0.2 PID IL2 PI3K PATHWAY IL2 signaling events mediated by PI3K
0.0 0.1 PID HNF3B PATHWAY FOXA2 and FOXA3 transcription factor networks
0.0 0.1 PID HES HEY PATHWAY Notch-mediated HES/HEY network
0.0 0.2 PID RAC1 PATHWAY RAC1 signaling pathway
0.0 0.2 PID P53 DOWNSTREAM PATHWAY Direct p53 effectors
0.0 0.0 PID TRKR PATHWAY Neurotrophic factor-mediated Trk receptor signaling
0.0 0.0 PID ATM PATHWAY ATM pathway

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.0 REACTOME LOSS OF NLP FROM MITOTIC CENTROSOMES Genes involved in Loss of Nlp from mitotic centrosomes
0.1 0.3 REACTOME ABACAVIR TRANSPORT AND METABOLISM Genes involved in Abacavir transport and metabolism
0.1 0.2 REACTOME MTORC1 MEDIATED SIGNALLING Genes involved in mTORC1-mediated signalling
0.1 0.4 REACTOME METABOLISM OF NUCLEOTIDES Genes involved in Metabolism of nucleotides
0.1 0.1 REACTOME VEGF LIGAND RECEPTOR INTERACTIONS Genes involved in VEGF ligand-receptor interactions
0.1 0.2 REACTOME ARMS MEDIATED ACTIVATION Genes involved in ARMS-mediated activation
0.1 0.3 REACTOME INTRINSIC PATHWAY FOR APOPTOSIS Genes involved in Intrinsic Pathway for Apoptosis
0.1 0.3 REACTOME PHASE II CONJUGATION Genes involved in Phase II conjugation
0.1 0.6 REACTOME INTERFERON SIGNALING Genes involved in Interferon Signaling
0.1 0.2 REACTOME NEUROTRANSMITTER RECEPTOR BINDING AND DOWNSTREAM TRANSMISSION IN THE POSTSYNAPTIC CELL Genes involved in Neurotransmitter Receptor Binding And Downstream Transmission In The Postsynaptic Cell
0.0 0.1 REACTOME NRAGE SIGNALS DEATH THROUGH JNK Genes involved in NRAGE signals death through JNK
0.0 0.1 REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION Genes involved in Amino acid synthesis and interconversion (transamination)
0.0 0.2 REACTOME SIGNALING BY RHO GTPASES Genes involved in Signaling by Rho GTPases
0.0 0.1 REACTOME INTEGRATION OF ENERGY METABOLISM Genes involved in Integration of energy metabolism
0.0 0.2 REACTOME PLATELET ACTIVATION SIGNALING AND AGGREGATION Genes involved in Platelet activation, signaling and aggregation
0.0 0.1 REACTOME MITOCHONDRIAL PROTEIN IMPORT Genes involved in Mitochondrial Protein Import
0.0 0.1 REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT Genes involved in SLC-mediated transmembrane transport
0.0 0.2 REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION Genes involved in E2F-enabled inhibition of pre-replication complex formation
0.0 0.5 REACTOME ABCA TRANSPORTERS IN LIPID HOMEOSTASIS Genes involved in ABCA transporters in lipid homeostasis
0.0 0.4 REACTOME FORMATION OF THE TERNARY COMPLEX AND SUBSEQUENTLY THE 43S COMPLEX Genes involved in Formation of the ternary complex, and subsequently, the 43S complex
0.0 0.1 REACTOME SIGNALING BY PDGF Genes involved in Signaling by PDGF
0.0 0.2 REACTOME NONSENSE MEDIATED DECAY ENHANCED BY THE EXON JUNCTION COMPLEX Genes involved in Nonsense Mediated Decay Enhanced by the Exon Junction Complex
0.0 0.0 REACTOME PRE NOTCH EXPRESSION AND PROCESSING Genes involved in Pre-NOTCH Expression and Processing
0.0 0.0 REACTOME DOWNSTREAM SIGNALING OF ACTIVATED FGFR Genes involved in Downstream signaling of activated FGFR
0.0 0.1 REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION Genes involved in Transcriptional Regulation of White Adipocyte Differentiation
0.0 0.0 REACTOME G2 M DNA DAMAGE CHECKPOINT Genes involved in G2/M DNA damage checkpoint