Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT3G17730
Z-value: 1.17
Transcription factors associated with AT3G17730
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G17730
|
AT3G17730 | NAC domain containing protein 57 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC057 | arTal_v1_Chr3_+_6064272_6064272 | 0.10 | 7.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 2.67 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 2.37 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 1.87 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr4_+_13128394_13128394 Show fit | 1.85 |
AT4G25810.1
|
xyloglucan endotransglycosylase 6 |
|
| arTal_v1_Chr1_+_29135904_29135904 Show fit | 1.82 |
AT1G77530.1
AT1G77530.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr5_+_1629610_1629610 Show fit | 1.68 |
AT5G05500.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr5_+_4488476_4488476 Show fit | 1.65 |
AT5G13930.1
|
Chalcone and stilbene synthase family protein |
|
| arTal_v1_Chr5_-_15167859_15167864 Show fit | 1.65 |
AT5G38020.2
AT5G38020.1 |
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein |
|
| arTal_v1_Chr5_-_15382071_15382071 Show fit | 1.60 |
AT5G38420.1
|
Ribulose bisphosphate carboxylase (small chain) family protein |
|
| arTal_v1_Chr3_+_8703220_8703220 Show fit | 1.59 |
AT3G24100.1
|
Uncharacterized protein family SERF |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G17730
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 8.3 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.0 | 3.5 | GO:0010054 | trichoblast differentiation(GO:0010054) |
| 0.0 | 3.3 | GO:0032259 | methylation(GO:0032259) |
| 0.1 | 2.1 | GO:0010227 | floral organ abscission(GO:0010227) |
| 0.0 | 2.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.1 | 1.9 | GO:0045493 | xylan catabolic process(GO:0045493) |
| 0.1 | 1.9 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.0 | 1.9 | GO:0048588 | developmental cell growth(GO:0048588) |
| 0.1 | 1.7 | GO:0009833 | plant-type primary cell wall biogenesis(GO:0009833) |
| 0.5 | 1.5 | GO:0015840 | urea transport(GO:0015840) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 31.3 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 8.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 4.9 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.3 | 2.3 | GO:0009503 | thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076) |
| 0.0 | 2.2 | GO:0090406 | pollen tube(GO:0090406) |
| 0.1 | 1.9 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.1 | 1.5 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.3 | 1.3 | GO:0034663 | endoplasmic reticulum chaperone complex(GO:0034663) |
| 0.1 | 1.1 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.0 | 1.1 | GO:0005764 | lysosome(GO:0005764) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 5.6 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
| 0.1 | 3.9 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 3.8 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.0 | 3.1 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
| 0.0 | 2.9 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 2.7 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.1 | 2.7 | GO:0016760 | cellulose synthase (UDP-forming) activity(GO:0016760) |
| 0.0 | 2.6 | GO:0004722 | protein serine/threonine phosphatase activity(GO:0004722) |
| 0.2 | 2.2 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
| 0.0 | 2.0 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.3 | 0.8 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
| 0.1 | 0.6 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.4 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.9 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 0.8 | REACTOME NUCLEOTIDE BINDING DOMAIN LEUCINE RICH REPEAT CONTAINING RECEPTOR NLR SIGNALING PATHWAYS | Genes involved in Nucleotide-binding domain, leucine rich repeat containing receptor (NLR) signaling pathways |
| 0.1 | 0.3 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.0 | 0.2 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.0 | 0.2 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |