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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G15270

Z-value: 0.73

Transcription factors associated with AT3G15270

Gene Symbol Gene ID Gene Info
AT3G15270 squamosa promoter binding protein-like 5

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
SPL5arTal_v1_Chr3_-_5142323_51423230.332.5e-01Click!

Activity profile of AT3G15270 motif

Sorted Z-values of AT3G15270 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_23187840 0.98 AT5G57220.1
cytochrome P450, family 81, subfamily F, polypeptide 2
Chr5_+_16441808 0.87 AT5G41080.2
PLC-like phosphodiesterases superfamily protein
Chr5_+_16441655 0.86 AT5G41080.1
PLC-like phosphodiesterases superfamily protein
Chr3_-_11194897 0.76 AT3G29250.2
AT3G29250.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_+_26266180 0.74 AT5G65690.1
AT5G65690.2
AT5G65690.3
AT5G65690.4
phosphoenolpyruvate carboxykinase 2
Chr1_-_1702749 0.71 AT1G05675.1
UDP-Glycosyltransferase superfamily protein
Chr4_+_11934969 0.70 AT4G22710.1
cytochrome P450, family 706, subfamily A, polypeptide 2
Chr2_-_12277417 0.64 AT2G28630.2
3-ketoacyl-CoA synthase 12
Chr3_+_7770899 0.64 AT3G22060.1
Receptor-like protein kinase-related family protein
Chr4_+_7434199 0.64 AT4G12545.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr5_+_23003909 0.62 AT5G56870.1
beta-galactosidase 4
Chr2_-_12277245 0.62 AT2G28630.1
3-ketoacyl-CoA synthase 12
Chr3_-_17008528 0.62 AT3G46280.1
kinase-like protein
Chr4_-_12393982 0.61 AT4G23810.1
WRKY family transcription factor
Chr3_-_11195171 0.61 AT3G29250.3
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_-_17166032 0.56 AT5G42800.1
dihydroflavonol 4-reductase
Chr4_-_17672353 0.56 AT4G37610.1
BTB and TAZ domain protein 5
Chr3_-_12451556 0.55 AT3G30775.2
AT3G30775.1
Methylenetetrahydrofolate reductase family protein
Chr4_-_17777445 0.53 AT4G37800.1
xyloglucan endotransglucosylase/hydrolase 7
Chr3_-_16487349 0.53 AT3G45070.1
AT3G45070.3
AT3G45070.2
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr1_+_6697874 0.52 AT1G19380.1
sugar, putative (DUF1195)
Chr1_+_30383561 0.52 AT1G80840.1
WRKY DNA-binding protein 40
Chr1_-_10720843 0.51 AT1G30370.1
alpha/beta-Hydrolases superfamily protein
Chr3_+_9480746 0.51 AT3G25900.1
AT3G25900.3
AT3G25900.2
Homocysteine S-methyltransferase family protein
Chr3_+_957112 0.50 AT3G03780.1
AT3G03780.3
methionine synthase 2
Chr1_+_17123785 0.49 AT1G45201.3
AT1G45201.1
AT1G45201.2
triacylglycerol lipase-like 1
Chr4_-_14002069 0.49 AT4G28250.2
AT4G28250.3
AT4G28250.4
AT4G28250.1
expansin B3
Chr5_-_19036938 0.49 AT5G46890.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr2_+_15445294 0.49 AT2G36830.1
gamma tonoplast intrinsic protein
Chr3_+_956862 0.48 AT3G03780.2
methionine synthase 2
Chr1_+_20458952 0.47 AT1G54870.2
AT1G54870.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr1_+_12267808 0.46 AT1G33811.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr1_+_28776861 0.46 AT1G76680.2
12-oxophytodienoate reductase 1
Chr1_+_10897925 0.45 AT1G30720.1
FAD-binding Berberine family protein
Chr1_+_28776626 0.45 AT1G76680.1
12-oxophytodienoate reductase 1
Chr5_+_15616770 0.45 AT5G39020.1
Malectin/receptor-like protein kinase family protein
Chr1_-_2747936 0.45 AT1G08630.6
AT1G08630.7
AT1G08630.5
AT1G08630.2
threonine aldolase 1
Chr2_-_16702336 0.45 AT2G40000.1
ortholog of sugar beet HS1 PRO-1 2
Chr4_+_17752079 0.45 AT4G37770.1
1-amino-cyclopropane-1-carboxylate synthase 8
Chr5_+_8217191 0.45 AT5G24210.1
AT5G24210.2
AT5G24210.3
alpha/beta-Hydrolases superfamily protein
Chr5_+_26772644 0.44 AT5G67080.1
mitogen-activated protein kinase kinase kinase 19
Chr1_-_29638773 0.42 AT1G78830.1
Curculin-like (mannose-binding) lectin family protein
Chr3_+_17879542 0.42 AT3G48280.1
cytochrome P450, family 71, subfamily A, polypeptide 25
Chr3_-_23261927 0.42 AT3G62930.1
Thioredoxin superfamily protein
Chr5_-_19249622 0.41 AT5G47450.1
tonoplast intrinsic protein 2;3
Chr4_-_524249 0.41 AT4G01250.1
WRKY family transcription factor
Chr1_+_6679281 0.41 AT1G19320.1
Pathogenesis-related thaumatin superfamily protein
Chr1_+_29502506 0.41 AT1G78410.1
AT1G78410.2
VQ motif-containing protein
Chr5_+_4904873 0.41 AT5G15130.2
WRKY DNA-binding protein 72
Chr5_+_3423381 0.41 AT5G10830.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_+_30241452 0.40 AT1G80440.1
Galactose oxidase/kelch repeat superfamily protein
Chr2_-_9733545 0.40 AT2G22850.2
AT2G22850.1
basic leucine-zipper 6
Chr4_+_13959872 0.40 AT4G28085.1
AT4G28085.2
transmembrane protein
Chr1_+_5525293 0.39 AT1G16130.1
wall associated kinase-like 2
Chr4_+_13130291 0.39 AT4G25820.1
xyloglucan endotransglucosylase/hydrolase 14
Chr1_-_20019835 0.39 AT1G53635.1
hypothetical protein
Chr5_+_4904290 0.39 AT5G15130.1
WRKY DNA-binding protein 72
Chr5_-_20016857 0.39 AT5G49360.1
beta-xylosidase 1
Chr2_-_14541617 0.39 AT2G34500.1
cytochrome P450, family 710, subfamily A, polypeptide 1
Chr1_+_28746833 0.39 AT1G76600.1
poly polymerase
Chr1_-_19672021 0.39 AT1G52827.1
cadmium tolerance 1
Chr5_+_8042853 0.39 AT5G23860.1
AT5G23860.2
tubulin beta 8
Chr1_+_7043628 0.38 AT1G20350.1
translocase inner membrane subunit 17-1
Chr2_+_19505827 0.38 AT2G47540.1
Pollen Ole e 1 allergen and extensin family protein
Chr2_+_3618058 0.38 AT2G08986.1
hypothetical protein
Chr3_-_8064649 0.38 AT3G22800.1
Leucine-rich repeat (LRR) family protein
Chr5_-_19629167 0.38 AT5G48430.1
Eukaryotic aspartyl protease family protein
Chr5_+_6127773 0.38 AT5G18470.1
Curculin-like (mannose-binding) lectin family protein
Chr3_+_23266227 0.38 AT3G62950.1
Thioredoxin superfamily protein
Chr3_-_17441242 0.38 AT3G47340.3
AT3G47340.2
glutamine-dependent asparagine synthase 1
Chr1_+_4276505 0.37 AT1G12560.1
expansin A7
Chr4_+_14920376 0.37 AT4G30530.1
Class I glutamine amidotransferase-like superfamily protein
Chr4_-_17355891 0.37 AT4G36850.3
AT4G36850.4
AT4G36850.2
AT4G36850.1
PQ-loop repeat family protein / transmembrane family protein
Chr1_-_29982819 0.37 AT1G79680.1
WALL ASSOCIATED KINASE (WAK)-LIKE 10
Chr3_-_16448844 0.36 AT3G44990.1
xyloglucan endo-transglycosylase-related 8
Chr3_-_17441431 0.36 AT3G47340.1
glutamine-dependent asparagine synthase 1
Chr1_-_8427235 0.36 AT1G23850.1
transmembrane protein
Chr5_+_19456837 0.36 AT5G48010.2
AT5G48010.1
thalianol synthase 1
Chr2_-_17441416 0.36 AT2G41810.1
imidazolonepropionase (Protein of unknown function, DUF642)
Chr1_-_575085 0.36 AT1G02660.1
alpha/beta-Hydrolases superfamily protein
Chr1_+_739544 0.36 AT1G03090.2
AT1G03090.1
methylcrotonyl-CoA carboxylase alpha chain
Chr4_-_1005253 0.36 AT4G02290.2
AT4G02290.1
glycosyl hydrolase 9B13
Chr5_+_1153740 0.36 AT5G04200.1
metacaspase 9
Chr3_-_3357754 0.36 AT3G10720.2
Plant invertase/pectin methylesterase inhibitor superfamily
Chr3_+_7906521 0.36 AT3G22370.1
alternative oxidase 1A
Chr2_-_6920319 0.35 AT2G15880.1
Leucine-rich repeat (LRR) family protein
Chr2_+_15379660 0.35 AT2G36690.1
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr4_+_12170955 0.35 AT4G23270.1
AT4G23270.2
AT4G23270.3
cysteine-rich RLK (RECEPTOR-like protein kinase) 19
Chr5_+_17734706 0.35 AT5G44070.1
AT5G44070.2
phytochelatin synthase 1 (PCS1)
Chr1_-_8310916 0.35 AT1G23390.1
Kelch repeat-containing F-box family protein
Chr2_+_15379846 0.35 AT2G36690.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr1_-_21063047 0.35 AT1G56250.1
phloem protein 2-B14
Chr3_+_18733021 0.35 AT3G50480.2
AT3G50480.1
homolog of RPW8 4
Chr5_-_17881483 0.35 AT5G44380.1
AT5G44380.2
FAD-binding Berberine family protein
Chr1_+_28517939 0.34 AT1G75960.1
AMP-dependent synthetase and ligase family protein
Chr1_+_21707175 0.34 AT1G58420.1
Uncharacterized conserved protein UCP031279
Chr2_-_6710856 0.34 AT2G15390.1
fucosyltransferase 4
Chr3_-_3356811 0.34 AT3G10720.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_-_18954692 0.34 AT5G46710.1
AT5G46710.2
AT5G46710.3
PLATZ transcription factor family protein
Chr5_-_21092410 0.34 AT5G51890.1
Peroxidase superfamily protein
Chr1_+_20151016 0.34 AT1G53990.1
GDSL-motif lipase 3
Chr5_+_448092 0.34 AT5G02230.1
AT5G02230.3
AT5G02230.2
Haloacid dehalogenase-like hydrolase (HAD) superfamily protein
Chr1_-_28453820 0.34 AT1G75780.1
tubulin beta-1 chain
Chr3_-_2130451 0.34 AT3G06750.1
hydroxyproline-rich glycoprotein family protein
Chr1_+_10892445 0.34 AT1G30700.1
FAD-binding Berberine family protein
Chr3_+_9409160 0.34 AT3G25780.1
allene oxide cyclase 3
Chr3_-_17440176 0.34 AT3G47340.4
glutamine-dependent asparagine synthase 1
Chr5_+_25016860 0.34 AT5G62280.1
DUF1442 family protein (DUF1442)
Chr4_-_13204049 0.33 AT4G26020.3
AT4G26020.1
AT4G26020.2
4/1 protein short form protein
Chr4_+_334573 0.33 AT4G00780.1
TRAF-like family protein
Chr5_-_24765511 0.33 AT5G61590.1
Integrase-type DNA-binding superfamily protein
Chr5_-_22133688 0.33 AT5G54510.1
Auxin-responsive GH3 family protein
Chr3_-_162905 0.33 AT3G01420.1
Peroxidase superfamily protein
Chr2_-_6711156 0.33 AT2G15390.2
fucosyltransferase 4
Chr4_-_12471261 0.33 AT4G24015.1
RING/U-box superfamily protein
Chr1_-_28920976 0.33 AT1G76960.1
transmembrane protein
Chr1_-_22641999 0.32 AT1G61360.4
AT1G61360.3
S-locus lectin protein kinase family protein
Chr2_-_2171936 0.32 AT2G05753.1
hypothetical protein
Chr1_-_473160 0.32 AT1G02360.1
AT1G02360.2
AT1G02360.3
Chitinase family protein
Chr1_+_25957823 0.32 AT1G69040.1
ACT domain repeat 4
Chr1_+_27188036 0.32 AT1G72230.1
Cupredoxin superfamily protein
Chr1_-_26765285 0.32 AT1G70985.1
hydroxyproline-rich glycoprotein family protein
Chr1_+_27141765 0.32 AT1G72140.1
Major facilitator superfamily protein
Chr2_-_18324561 0.32 AT2G44380.1
Cysteine/Histidine-rich C1 domain family protein
Chr5_+_3889906 0.32 AT5G12050.1
rho GTPase-activating protein
Chr5_+_23420184 0.32 AT5G57800.1
Fatty acid hydroxylase superfamily
Chr5_+_1231609 0.32 AT5G04370.1
AT5G04370.3
AT5G04370.2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr4_+_1032350 0.31 AT4G02330.1
Plant invertase/pectin methylesterase inhibitor superfamily
Chr5_-_213472 0.31 AT5G01540.1
lectin receptor kinase a4.1
Chr1_-_4970311 0.31 AT1G14520.1
AT1G14520.3
AT1G14520.4
myo-inositol oxygenase 1
Chr5_-_22358381 0.31 AT5G55090.1
AT5G55090.2
mitogen-activated protein kinase kinase kinase 15
Chr2_-_6867004 0.31 AT2G15760.1
calmodulin-binding protein (DUF1645)
Chr4_+_8934296 0.31 AT4G15690.1
Thioredoxin superfamily protein
Chr5_-_24987811 0.31 AT5G62210.1
Embryo-specific protein 3, (ATS3)
Chr4_-_7319774 0.31 AT4G12330.1
cytochrome P450, family 706, subfamily A, polypeptide 7
Chr4_+_17346805 0.31 AT4G36820.1
calcium uniporter (DUF607)
Chr1_+_25957567 0.31 AT1G69040.2
ACT domain repeat 4
Chr5_-_7643098 0.31 AT5G22860.4
AT5G22860.3
AT5G22860.1
AT5G22860.6
AT5G22860.7
AT5G22860.8
AT5G22860.2
AT5G22860.5
Serine carboxypeptidase S28 family protein
Chr4_+_9928587 0.30 AT4G17870.1
Polyketide cyclase/dehydrase and lipid transport superfamily protein
Chr2_+_18958999 0.30 AT2G46140.1
Late embryogenesis abundant protein
Chr2_+_14836062 0.30 AT2G35210.2
AT2G35210.1
root and pollen arfgap
Chr1_-_22641111 0.30 AT1G61360.1
S-locus lectin protein kinase family protein
Chr4_+_18406627 0.30 AT4G39660.1
AT4G39660.2
alanine:glyoxylate aminotransferase 2
Chr1_+_27058381 0.30 AT1G71890.1
Major facilitator superfamily protein
Chr2_+_17269158 0.30 AT2G41430.2
AT2G41430.3
AT2G41430.1
AT2G41430.5
AT2G41430.4
dehydration-induced protein (ERD15)
Chr1_-_19649340 0.30 AT1G52750.1
alpha/beta-Hydrolases superfamily protein
Chr5_-_20878464 0.30 AT5G51390.1
hypothetical protein
Chr1_+_29373803 0.29 AT1G78090.1
AT1G78090.2
trehalose-6-phosphate phosphatase
Chr1_-_1547798 0.29 AT1G05300.2
AT1G05300.1
zinc transporter 5 precursor
Chr4_+_10069458 0.29 AT4G18195.1
purine permease 8
Chr1_+_10900681 0.29 AT1G30730.1
FAD-binding Berberine family protein
Chr4_+_14566183 0.29 AT4G29740.3
AT4G29740.2
AT4G29740.1
cytokinin oxidase 4
Chr4_+_1931883 0.29 AT4G04020.1
fibrillin
Chr1_-_8912642 0.29 AT1G25400.2
transmembrane protein
Chr2_+_17130774 0.29 AT2G41070.5
AT2G41070.2
AT2G41070.1
AT2G41070.3
Basic-leucine zipper (bZIP) transcription factor family protein
Chr4_+_8937358 0.29 AT4G15700.1
Thioredoxin superfamily protein
Chr2_+_16108235 0.29 AT2G38470.1
WRKY DNA-binding protein 33
Chr5_+_1672070 0.29 AT5G05600.1
AT5G05600.2
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Chr5_-_17033800 0.29 AT5G42590.1
cytochrome P450, family 71, subfamily A, polypeptide 16
Chr1_-_1437763 0.29 AT1G05020.1
ENTH/ANTH/VHS superfamily protein
Chr1_-_8912822 0.28 AT1G25400.1
transmembrane protein
Chr1_-_6677680 0.28 AT1G19310.1
RING/U-box superfamily protein
Chr3_-_8589754 0.28 AT3G23810.1
S-adenosyl-l-homocysteine (SAH) hydrolase 2
Chr4_+_8929031 0.28 AT4G15670.1
Thioredoxin superfamily protein
Chr4_-_11623797 0.28 AT4G21903.2
AT4G21903.1
MATE efflux family protein
Chr4_+_13873708 0.28 AT4G27860.2
AT4G27860.1
AT4G27860.4
AT4G27860.3
vacuolar iron transporter (VIT) family protein
Chr4_+_10259600 0.28 AT4G18640.1
Leucine-rich repeat protein kinase family protein
Chr1_-_22641825 0.27 AT1G61360.2
S-locus lectin protein kinase family protein
Chr5_-_23406479 0.27 AT5G57780.1
transcription factor
Chr4_-_11519805 0.27 AT4G21680.1
NITRATE TRANSPORTER 1.8
Chr1_+_7252111 0.27 AT1G20850.1
xylem cysteine peptidase 2
Chr2_+_14003128 0.27 AT2G32990.1
glycosyl hydrolase 9B8
Chr3_+_22804998 0.27 AT3G61630.1
cytokinin response factor 6
Chr3_-_17373547 0.27 AT3G47180.1
RING/U-box superfamily protein
Chr2_-_14322082 0.27 AT2G33850.1
E6-like protein
Chr2_+_13518199 0.27 AT2G31790.1
UDP-Glycosyltransferase superfamily protein
Chr1_-_9956960 0.27 AT1G28370.1
AT1G28370.2
ERF domain protein 11
Chr4_+_12121369 0.27 AT4G23140.1
AT4G23140.2
cysteine-rich RLK (RECEPTOR-like protein kinase) 6
Chr1_-_13456336 0.26 AT1G36060.1
Integrase-type DNA-binding superfamily protein
Chr4_-_17494279 0.26 AT4G37150.1
methyl esterase 9
Chr5_+_4087689 0.26 AT5G12940.1
Leucine-rich repeat (LRR) family protein
Chr3_-_21293158 0.26 AT3G57520.2
AT3G57520.3
AT3G57520.1
seed imbibition 2
Chr3_-_6457509 0.26 AT3G18750.1
AT3G18750.6
AT3G18750.3
AT3G18750.4
with no lysine (K) kinase 6
Chr2_+_16200944 0.26 AT2G38760.1
annexin 3
Chr3_+_18929526 0.26 AT3G50930.1
cytochrome BC1 synthesi
Chr2_+_18842516 0.26 AT2G45750.1
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr2_+_14368536 0.26 AT2G34010.2
AT2G34010.1
verprolin
Chr1_+_20143144 0.25 AT1G53940.1
AT1G53940.2
GDSL-motif lipase 2
Chr3_-_7656053 0.25 AT3G21720.1
isocitrate lyase
Chr4_-_16740601 0.25 AT4G35180.2
AT4G35180.1
LYS/HIS transporter 7
Chr2_-_12173951 0.25 AT2G28470.2
AT2G28470.4
AT2G28470.1
AT2G28470.3
beta-galactosidase 8
Chr5_+_7168106 0.25 AT5G21100.1
Plant L-ascorbate oxidase
Chr1_+_10537648 0.25 AT1G30040.2
gibberellin 2-oxidase
Chr2_+_7209108 0.25 AT2G16630.1
Pollen Ole e 1 allergen and extensin family protein
Chr1_+_23131928 0.25 AT1G62500.1
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein
Chr1_+_3288087 0.25 AT1G10070.3
AT1G10070.2
AT1G10070.1
branched-chain amino acid transaminase 2
Chr3_-_16479559 0.25 AT3G45060.1
high affinity nitrate transporter 2.6
Chr1_+_27654744 0.25 AT1G73580.1
Calcium-dependent lipid-binding (CaLB domain) family protein
Chr5_+_7502427 0.25 AT5G22580.1
Stress responsive A/B Barrel Domain-containing protein
Chr4_-_3950602 0.24 AT4G06700.1

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G15270

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.7 GO:0046475 glycerophospholipid catabolic process(GO:0046475)
0.2 1.3 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.2 1.2 GO:0006567 threonine catabolic process(GO:0006567)
0.2 1.0 GO:1903175 fatty alcohol biosynthetic process(GO:1903175)
0.2 0.5 GO:0033528 S-methylmethionine metabolic process(GO:0033477) S-methylmethionine cycle(GO:0033528)
0.2 1.0 GO:0009759 indole glucosinolate biosynthetic process(GO:0009759)
0.2 0.5 GO:0015840 urea transport(GO:0015840)
0.1 0.9 GO:0031222 arabinan catabolic process(GO:0031222)
0.1 1.0 GO:0052317 camalexin biosynthetic process(GO:0010120) camalexin metabolic process(GO:0052317)
0.1 0.5 GO:0019310 inositol catabolic process(GO:0019310)
0.1 0.3 GO:0008645 hexose transport(GO:0008645) fructose transport(GO:0015755) vacuolar transmembrane transport(GO:0034486)
0.1 0.3 GO:0046498 S-adenosylmethionine cycle(GO:0033353) S-adenosylhomocysteine metabolic process(GO:0046498)
0.1 0.4 GO:0019427 acetyl-CoA biosynthetic process from acetate(GO:0019427)
0.1 0.4 GO:0080003 thalianol metabolic process(GO:0080003)
0.1 0.6 GO:0046133 pyrimidine ribonucleoside catabolic process(GO:0046133) pyrimidine nucleoside catabolic process(GO:0046135)
0.1 0.4 GO:0006569 tryptophan catabolic process(GO:0006569) indolalkylamine catabolic process(GO:0046218)
0.1 0.4 GO:0042218 1-aminocyclopropane-1-carboxylate biosynthetic process(GO:0042218)
0.1 0.3 GO:0033530 raffinose metabolic process(GO:0033530)
0.1 0.3 GO:0002698 negative regulation of immune effector process(GO:0002698) negative regulation of defense response to virus(GO:0050687)
0.1 0.6 GO:2000068 regulation of defense response to insect(GO:2000068)
0.1 0.3 GO:0042759 long-chain fatty acid biosynthetic process(GO:0042759)
0.1 0.3 GO:0046440 lysine catabolic process(GO:0006554) L-lysine catabolic process to acetyl-CoA(GO:0019474) L-lysine catabolic process(GO:0019477) L-lysine catabolic process to acetyl-CoA via saccharopine(GO:0033512) L-lysine metabolic process(GO:0046440)
0.1 0.3 GO:0048205 COPI-coated vesicle budding(GO:0035964) Golgi transport vesicle coating(GO:0048200) COPI coating of Golgi vesicle(GO:0048205)
0.1 0.2 GO:1990937 xylan acetylation(GO:1990937)
0.1 0.3 GO:0071276 phytochelatin metabolic process(GO:0046937) phytochelatin biosynthetic process(GO:0046938) cellular response to cadmium ion(GO:0071276) cellular detoxification of cadmium ion(GO:0098849)
0.1 0.2 GO:0071422 thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422)
0.1 0.2 GO:0007639 tissue homeostasis(GO:0001894) homeostasis of number of meristem cells(GO:0007639) homeostasis of number of cells(GO:0048872) homeostasis of number of cells within a tissue(GO:0048873)
0.1 0.5 GO:0006552 leucine catabolic process(GO:0006552)
0.1 0.3 GO:0019336 phenol-containing compound catabolic process(GO:0019336)
0.1 0.3 GO:0006097 glyoxylate cycle(GO:0006097)
0.1 0.3 GO:0006723 cuticle hydrocarbon biosynthetic process(GO:0006723)
0.1 1.3 GO:0031408 oxylipin biosynthetic process(GO:0031408)
0.1 0.2 GO:0046168 glycerol-3-phosphate catabolic process(GO:0046168)
0.1 0.5 GO:0016103 diterpenoid catabolic process(GO:0016103) gibberellin catabolic process(GO:0045487)
0.1 0.6 GO:0050691 regulation of defense response to virus by host(GO:0050691)
0.1 0.3 GO:0042351 'de novo' GDP-L-fucose biosynthetic process(GO:0042351)
0.1 0.3 GO:0009823 cytokinin catabolic process(GO:0009823) hormone catabolic process(GO:0042447)
0.1 0.2 GO:0055089 fatty acid homeostasis(GO:0055089)
0.1 0.2 GO:0046146 tetrahydrobiopterin biosynthetic process(GO:0006729) tetrahydrobiopterin metabolic process(GO:0046146)
0.1 0.3 GO:0051091 positive regulation of sequence-specific DNA binding transcription factor activity(GO:0051091)
0.1 0.2 GO:0046499 S-adenosylmethioninamine biosynthetic process(GO:0006557) S-adenosylmethioninamine metabolic process(GO:0046499)
0.1 0.3 GO:0018874 benzoate metabolic process(GO:0018874)
0.1 0.2 GO:0033194 response to hydroperoxide(GO:0033194)
0.0 0.3 GO:0071585 detoxification of cadmium ion(GO:0071585)
0.0 0.7 GO:0006032 aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072)
0.0 0.2 GO:0035494 SNARE complex disassembly(GO:0035494)
0.0 0.2 GO:0016137 glycoside metabolic process(GO:0016137)
0.0 0.1 GO:0097033 respiratory chain complex III assembly(GO:0017062) mitochondrial respiratory chain complex III assembly(GO:0034551) mitochondrial respiratory chain complex III biogenesis(GO:0097033)
0.0 0.2 GO:0060919 auxin influx(GO:0060919)
0.0 0.1 GO:0008295 spermidine biosynthetic process(GO:0008295)
0.0 0.2 GO:2001295 malonyl-CoA biosynthetic process(GO:2001295)
0.0 0.4 GO:0016998 cell wall macromolecule catabolic process(GO:0016998)
0.0 0.1 GO:0071163 chromatin silencing at telomere(GO:0006348) DNA replication preinitiation complex assembly(GO:0071163) regulation of G1/S transition of mitotic cell cycle(GO:2000045)
0.0 0.1 GO:1900369 negative regulation of gene silencing by RNA(GO:0060967) negative regulation of RNA interference(GO:1900369)
0.0 0.4 GO:0031930 mitochondria-nucleus signaling pathway(GO:0031930)
0.0 0.2 GO:0070509 calcium ion import(GO:0070509)
0.0 0.0 GO:0090549 response to carbon starvation(GO:0090549)
0.0 0.0 GO:0006116 NADH oxidation(GO:0006116)
0.0 0.7 GO:0033238 regulation of cellular amino acid metabolic process(GO:0006521) regulation of cellular amine metabolic process(GO:0033238)
0.0 0.4 GO:0043155 photoinhibition(GO:0010205) negative regulation of photosynthesis, light reaction(GO:0043155)
0.0 0.2 GO:0009099 valine biosynthetic process(GO:0009099)
0.0 2.1 GO:0010411 xyloglucan metabolic process(GO:0010411)
0.0 0.3 GO:0009961 response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961)
0.0 0.2 GO:0070301 cellular response to hydrogen peroxide(GO:0070301)
0.0 1.5 GO:2000022 regulation of jasmonic acid mediated signaling pathway(GO:2000022)
0.0 0.2 GO:1902418 (+)-abscisic acid D-glucopyranosyl ester transmembrane transport(GO:1902418)
0.0 1.0 GO:0007166 cell surface receptor signaling pathway(GO:0007166)
0.0 0.1 GO:0090322 regulation of superoxide metabolic process(GO:0090322)
0.0 0.2 GO:0071323 cellular response to chitin(GO:0071323)
0.0 0.2 GO:0060151 peroxisome localization(GO:0060151)
0.0 1.0 GO:0006094 gluconeogenesis(GO:0006094)
0.0 0.5 GO:0015976 carbon utilization(GO:0015976)
0.0 0.2 GO:0046683 response to organophosphorus(GO:0046683)
0.0 0.2 GO:0010623 programmed cell death involved in cell development(GO:0010623)
0.0 0.1 GO:0033540 fatty acid beta-oxidation using acyl-CoA oxidase(GO:0033540)
0.0 0.1 GO:0010587 miRNA catabolic process(GO:0010587)
0.0 0.1 GO:0060776 simple leaf morphogenesis(GO:0060776)
0.0 0.3 GO:0097577 intracellular sequestering of iron ion(GO:0006880) sequestering of iron ion(GO:0097577)
0.0 0.2 GO:0009090 homoserine biosynthetic process(GO:0009090)
0.0 0.2 GO:0010581 regulation of starch biosynthetic process(GO:0010581)
0.0 2.4 GO:0045490 pectin catabolic process(GO:0045490)
0.0 0.3 GO:0007130 synaptonemal complex assembly(GO:0007130) synaptonemal complex organization(GO:0070193)
0.0 0.1 GO:0016598 protein arginylation(GO:0016598)
0.0 0.1 GO:0031929 TOR signaling(GO:0031929)
0.0 0.5 GO:0009695 jasmonic acid biosynthetic process(GO:0009695)
0.0 0.1 GO:0010731 protein glutathionylation(GO:0010731)
0.0 0.3 GO:1902223 L-phenylalanine biosynthetic process(GO:0009094) erythrose 4-phosphate/phosphoenolpyruvate family amino acid biosynthetic process(GO:1902223)
0.0 0.4 GO:0080163 regulation of protein serine/threonine phosphatase activity(GO:0080163)
0.0 0.3 GO:0046513 ceramide biosynthetic process(GO:0046513)
0.0 0.2 GO:0000289 nuclear-transcribed mRNA poly(A) tail shortening(GO:0000289)
0.0 0.1 GO:0015714 phosphoenolpyruvate transport(GO:0015714)
0.0 0.1 GO:0001676 long-chain fatty acid metabolic process(GO:0001676)
0.0 0.1 GO:0032957 inositol trisphosphate metabolic process(GO:0032957)
0.0 0.4 GO:0009299 mRNA transcription(GO:0009299)
0.0 0.1 GO:0048451 petal formation(GO:0048451)
0.0 0.3 GO:0071712 ER-associated misfolded protein catabolic process(GO:0071712)
0.0 0.5 GO:0009065 glutamine family amino acid catabolic process(GO:0009065)
0.0 0.1 GO:0000710 meiotic mismatch repair(GO:0000710)
0.0 0.1 GO:0009635 response to herbicide(GO:0009635)
0.0 0.6 GO:0071577 zinc II ion transmembrane transport(GO:0071577)
0.0 0.1 GO:0001560 regulation of cell growth by extracellular stimulus(GO:0001560)
0.0 0.3 GO:0030497 fatty acid elongation(GO:0030497)
0.0 0.1 GO:0071108 protein K48-linked deubiquitination(GO:0071108)
0.0 0.1 GO:0042149 cellular response to glucose starvation(GO:0042149)
0.0 0.1 GO:0010067 procambium histogenesis(GO:0010067)
0.0 0.1 GO:0099636 cytoplasmic streaming(GO:0099636)
0.0 0.1 GO:0015785 UDP-galactose transport(GO:0015785) UDP-galactose transmembrane transport(GO:0072334)
0.0 0.1 GO:0010275 NAD(P)H dehydrogenase complex assembly(GO:0010275)
0.0 0.1 GO:0015669 gas transport(GO:0015669)
0.0 0.1 GO:1902117 positive regulation of organelle assembly(GO:1902117)
0.0 0.1 GO:0051096 regulation of helicase activity(GO:0051095) positive regulation of helicase activity(GO:0051096)
0.0 0.0 GO:0017145 stem cell division(GO:0017145)
0.0 0.2 GO:0009298 GDP-mannose biosynthetic process(GO:0009298)
0.0 0.3 GO:0048766 root hair initiation(GO:0048766)
0.0 0.1 GO:0090059 protoxylem development(GO:0090059)
0.0 0.1 GO:0060860 regulation of floral organ abscission(GO:0060860) negative regulation of floral organ abscission(GO:0060862)
0.0 0.0 GO:2000692 negative regulation of seed maturation(GO:2000692)
0.0 0.1 GO:0071457 cellular response to copper ion(GO:0071280) cellular response to ozone(GO:0071457)
0.0 0.2 GO:0010021 amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.0 0.1 GO:0009939 positive regulation of gibberellic acid mediated signaling pathway(GO:0009939)
0.0 0.1 GO:0006624 vacuolar protein processing(GO:0006624)
0.0 1.1 GO:0048544 recognition of pollen(GO:0048544)
0.0 0.1 GO:0006556 S-adenosylmethionine biosynthetic process(GO:0006556)
0.0 0.1 GO:1902969 mitotic DNA replication(GO:1902969)
0.0 0.4 GO:0030150 protein import into mitochondrial matrix(GO:0030150)
0.0 0.1 GO:0080187 floral organ senescence(GO:0080187)
0.0 0.4 GO:0006863 purine nucleobase transport(GO:0006863)
0.0 0.2 GO:0016925 protein sumoylation(GO:0016925)
0.0 0.3 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 0.1 GO:0048281 inflorescence morphogenesis(GO:0048281)
0.0 0.1 GO:0034219 carbohydrate transmembrane transport(GO:0034219)
0.0 0.2 GO:1902183 regulation of shoot apical meristem development(GO:1902183)
0.0 0.1 GO:0006103 2-oxoglutarate metabolic process(GO:0006103)
0.0 0.2 GO:0010106 cellular response to iron ion starvation(GO:0010106)
0.0 0.1 GO:0090030 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.1 GO:0071423 malate transmembrane transport(GO:0071423)
0.0 0.1 GO:0009590 detection of gravity(GO:0009590)
0.0 0.1 GO:0010158 abaxial cell fate specification(GO:0010158)
0.0 0.1 GO:0010603 regulation of cytoplasmic mRNA processing body assembly(GO:0010603)
0.0 0.1 GO:0007205 protein kinase C-activating G-protein coupled receptor signaling pathway(GO:0007205)
0.0 0.1 GO:0009610 response to symbiotic fungus(GO:0009610)
0.0 0.1 GO:0009650 UV protection(GO:0009650)
0.0 0.1 GO:0006120 mitochondrial electron transport, NADH to ubiquinone(GO:0006120)
0.0 0.1 GO:0070861 regulation of protein exit from endoplasmic reticulum(GO:0070861) positive regulation of protein exit from endoplasmic reticulum(GO:0070863)
0.0 0.1 GO:0072698 protein localization to cytoskeleton(GO:0044380) protein localization to microtubule cytoskeleton(GO:0072698)
0.0 0.1 GO:0097054 L-glutamate biosynthetic process(GO:0097054)
0.0 0.1 GO:0046083 adenine metabolic process(GO:0046083) adenine biosynthetic process(GO:0046084)
0.0 0.0 GO:0010113 negative regulation of systemic acquired resistance(GO:0010113)
0.0 0.2 GO:0007143 female meiotic division(GO:0007143)
0.0 0.0 GO:0009660 amyloplast organization(GO:0009660)
0.0 0.0 GO:0042547 cell wall modification involved in multidimensional cell growth(GO:0042547)
0.0 0.4 GO:0010214 seed coat development(GO:0010214)
0.0 0.1 GO:0015914 phospholipid transport(GO:0015914)
0.0 0.1 GO:1904278 regulation of wax biosynthetic process(GO:1904276) positive regulation of wax biosynthetic process(GO:1904278)
0.0 0.1 GO:0090308 regulation of methylation-dependent chromatin silencing(GO:0090308) positive regulation of methylation-dependent chromatin silencing(GO:0090309)
0.0 0.1 GO:1904481 L-serine catabolic process(GO:0006565) glycine biosynthetic process from serine(GO:0019264) response to tetrahydrofolate(GO:1904481) cellular response to tetrahydrofolate(GO:1904482)
0.0 0.2 GO:0002213 defense response to insect(GO:0002213)
0.0 0.0 GO:0010501 RNA secondary structure unwinding(GO:0010501)
0.0 1.7 GO:0009751 response to salicylic acid(GO:0009751)
0.0 0.5 GO:0009828 plant-type cell wall loosening(GO:0009828)
0.0 0.1 GO:0016123 xanthophyll biosynthetic process(GO:0016123)
0.0 0.0 GO:0009305 protein biotinylation(GO:0009305)
0.0 0.2 GO:0006817 phosphate ion transport(GO:0006817)
0.0 0.0 GO:0000012 single strand break repair(GO:0000012)
0.0 0.3 GO:0019432 triglyceride biosynthetic process(GO:0019432)
0.0 0.1 GO:0009435 NAD biosynthetic process(GO:0009435)
0.0 0.4 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.2 GO:0022616 DNA strand elongation involved in DNA replication(GO:0006271) DNA strand elongation(GO:0022616)
0.0 0.1 GO:0035434 copper ion transmembrane transport(GO:0035434)
0.0 0.0 GO:0080088 spermidine hydroxycinnamate conjugate biosynthetic process(GO:0080088)
0.0 0.1 GO:0090057 root radial pattern formation(GO:0090057)
0.0 0.0 GO:0042407 cristae formation(GO:0042407)
0.0 0.0 GO:0090213 regulation of radial pattern formation(GO:0090213)
0.0 0.1 GO:0009750 response to fructose(GO:0009750)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:0035061 interchromatin granule(GO:0035061)
0.1 0.3 GO:0009514 glyoxysome(GO:0009514)
0.1 0.6 GO:0042406 extrinsic component of endoplasmic reticulum membrane(GO:0042406)
0.1 0.4 GO:0030062 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.1 0.2 GO:0030015 CCR4-NOT core complex(GO:0030015)
0.1 0.3 GO:0009331 glycerol-3-phosphate dehydrogenase complex(GO:0009331)
0.1 0.6 GO:0000322 storage vacuole(GO:0000322) protein storage vacuole(GO:0000326)
0.1 0.2 GO:0030130 clathrin coat of trans-Golgi network vesicle(GO:0030130)
0.0 0.1 GO:0045178 basal plasma membrane(GO:0009925) basolateral plasma membrane(GO:0016323) basal part of cell(GO:0045178)
0.0 0.1 GO:0005656 nuclear pre-replicative complex(GO:0005656) pre-replicative complex(GO:0036387)
0.0 0.3 GO:0034991 nuclear cohesin complex(GO:0000798) mitotic cohesin complex(GO:0030892) meiotic cohesin complex(GO:0030893) nuclear mitotic cohesin complex(GO:0034990) nuclear meiotic cohesin complex(GO:0034991)
0.0 0.1 GO:0032301 MutSalpha complex(GO:0032301)
0.0 0.1 GO:0043625 delta DNA polymerase complex(GO:0043625)
0.0 0.1 GO:0034703 ion channel complex(GO:0034702) cation channel complex(GO:0034703)
0.0 0.3 GO:0045252 oxoglutarate dehydrogenase complex(GO:0045252)
0.0 0.2 GO:0000153 cytoplasmic ubiquitin ligase complex(GO:0000153)
0.0 0.3 GO:0010168 ER body(GO:0010168)
0.0 0.1 GO:0010316 pyrophosphate-dependent phosphofructokinase complex(GO:0010316)
0.0 0.4 GO:0031305 integral component of mitochondrial inner membrane(GO:0031305)
0.0 0.4 GO:1902495 transmembrane transporter complex(GO:1902495)
0.0 0.3 GO:0019774 proteasome core complex, beta-subunit complex(GO:0019774)
0.0 0.1 GO:0032044 DSIF complex(GO:0032044)
0.0 0.2 GO:0031380 RNA-directed RNA polymerase complex(GO:0031379) nuclear RNA-directed RNA polymerase complex(GO:0031380)
0.0 0.1 GO:0042645 mitochondrial nucleoid(GO:0042645)
0.0 0.1 GO:0035371 microtubule plus-end(GO:0035371)
0.0 0.1 GO:0009503 thylakoid light-harvesting complex(GO:0009503) PSII associated light-harvesting complex II(GO:0009517) light-harvesting complex(GO:0030076)
0.0 0.4 GO:0012511 monolayer-surrounded lipid storage body(GO:0012511)
0.0 0.3 GO:0009986 cell surface(GO:0009986)
0.0 3.1 GO:0009505 plant-type cell wall(GO:0009505)
0.0 0.1 GO:0001405 presequence translocase-associated import motor(GO:0001405)
0.0 0.1 GO:0000813 ESCRT I complex(GO:0000813)
0.0 0.2 GO:0030125 clathrin vesicle coat(GO:0030125)
0.0 0.1 GO:0031588 nucleotide-activated protein kinase complex(GO:0031588)
0.0 0.5 GO:0000137 Golgi cis cisterna(GO:0000137)
0.0 0.1 GO:0038201 TORC1 complex(GO:0031931) TOR complex(GO:0038201)
0.0 0.1 GO:0034657 GID complex(GO:0034657)
0.0 0.1 GO:0030127 COPII vesicle coat(GO:0030127)
0.0 0.4 GO:0005764 lysosome(GO:0005764)
0.0 0.7 GO:0031977 thylakoid lumen(GO:0031977)
0.0 0.1 GO:0042555 MCM complex(GO:0042555)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 GO:0004793 threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732)
0.2 1.0 GO:0016629 12-oxophytodienoate reductase activity(GO:0016629)
0.2 1.0 GO:0008705 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085)
0.2 0.5 GO:0047150 S-adenosylmethionine-homocysteine S-methyltransferase activity(GO:0008898) betaine-homocysteine S-methyltransferase activity(GO:0047150)
0.2 0.5 GO:0015204 urea transmembrane transporter activity(GO:0015204)
0.1 1.0 GO:0004066 asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066)
0.1 0.4 GO:0000249 C-22 sterol desaturase activity(GO:0000249)
0.1 1.8 GO:0008889 glycerophosphodiester phosphodiesterase activity(GO:0008889)
0.1 0.5 GO:0046423 allene-oxide cyclase activity(GO:0046423)
0.1 0.3 GO:0071771 octadecanal decarbonylase activity(GO:0009924) aldehyde decarbonylase activity(GO:0071771) aldehyde oxygenase (deformylating) activity(GO:1990465)
0.1 0.7 GO:0004611 phosphoenolpyruvate carboxykinase activity(GO:0004611)
0.1 0.5 GO:0050113 inositol oxygenase activity(GO:0050113)
0.1 0.3 GO:0016802 adenosylhomocysteinase activity(GO:0004013) trialkylsulfonium hydrolase activity(GO:0016802)
0.1 0.4 GO:0034722 gamma-glutamyl-peptidase activity(GO:0034722)
0.1 0.3 GO:0052692 alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692)
0.1 0.6 GO:0010279 indole-3-acetic acid amido synthetase activity(GO:0010279)
0.1 1.8 GO:0102337 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338)
0.1 0.3 GO:0016748 dihydrolipoyllysine-residue succinyltransferase activity(GO:0004149) succinyltransferase activity(GO:0016748) S-succinyltransferase activity(GO:0016751)
0.1 0.2 GO:0015292 uniporter activity(GO:0015292)
0.1 0.2 GO:0045140 inositol phosphoceramide synthase activity(GO:0045140)
0.1 0.6 GO:0033946 xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946)
0.1 0.4 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.1 0.8 GO:0008107 galactoside 2-alpha-L-fucosyltransferase activity(GO:0008107) alpha-(1,2)-fucosyltransferase activity(GO:0031127)
0.1 0.4 GO:0004126 cytidine deaminase activity(GO:0004126)
0.1 0.4 GO:0003987 acetate-CoA ligase activity(GO:0003987)
0.1 0.9 GO:0009044 xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556)
0.1 0.3 GO:0043225 arsenite secondary active transmembrane transporter activity(GO:0008490) arsenite-transmembrane transporting ATPase activity(GO:0015446) anion transmembrane-transporting ATPase activity(GO:0043225) cadmium ion binding(GO:0046870)
0.1 0.2 GO:0015117 thiosulfate transmembrane transporter activity(GO:0015117)
0.1 0.2 GO:0030275 LRR domain binding(GO:0030275)
0.1 0.2 GO:0015026 coreceptor activity(GO:0015026)
0.1 0.5 GO:0004383 guanylate cyclase activity(GO:0004383)
0.1 0.2 GO:0050263 uridine nucleosidase activity(GO:0045437) ribosylpyrimidine nucleosidase activity(GO:0050263)
0.1 0.2 GO:0004367 glycerol-3-phosphate dehydrogenase [NAD+] activity(GO:0004367)
0.1 0.4 GO:0052654 L-leucine transaminase activity(GO:0052654) L-valine transaminase activity(GO:0052655) L-isoleucine transaminase activity(GO:0052656)
0.1 0.5 GO:0045543 gibberellin 2-beta-dioxygenase activity(GO:0045543) C-19 gibberellin 2-beta-dioxygenase activity(GO:0052634)
0.1 0.2 GO:0004462 lactoylglutathione lyase activity(GO:0004462)
0.1 0.6 GO:0016885 CoA carboxylase activity(GO:0016421) ligase activity, forming carbon-carbon bonds(GO:0016885)
0.1 0.3 GO:0004324 ferredoxin-NADP+ reductase activity(GO:0004324)
0.1 0.2 GO:0005353 fructose transmembrane transporter activity(GO:0005353)
0.1 0.2 GO:1902417 (+)-abscisic acid D-glucopyranosyl ester transmembrane transporter activity(GO:1902417)
0.1 0.6 GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847)
0.1 0.2 GO:0004014 adenosylmethionine decarboxylase activity(GO:0004014)
0.1 0.1 GO:0004359 glutaminase activity(GO:0004359)
0.1 0.4 GO:0004566 beta-glucuronidase activity(GO:0004566)
0.1 0.2 GO:0036381 pyridoxal 5'-phosphate synthase (glutamine hydrolysing) activity(GO:0036381)
0.1 0.6 GO:0008970 phosphatidylcholine 1-acylhydrolase activity(GO:0008970)
0.0 1.3 GO:0016762 xyloglucan:xyloglucosyl transferase activity(GO:0016762)
0.0 0.2 GO:0016165 linoleate 13S-lipoxygenase activity(GO:0016165)
0.0 0.3 GO:0019139 cytokinin dehydrogenase activity(GO:0019139)
0.0 0.6 GO:0008061 chitin binding(GO:0008061)
0.0 0.1 GO:0050577 GDP-L-fucose synthase activity(GO:0050577)
0.0 0.1 GO:0052640 salicylic acid glucosyltransferase (glucoside-forming) activity(GO:0052640)
0.0 0.3 GO:0008239 dipeptidyl-peptidase activity(GO:0008239)
0.0 1.1 GO:0004565 beta-galactosidase activity(GO:0004565)
0.0 0.1 GO:0052625 4-aminobenzoate amino acid synthetase activity(GO:0052625) benzoate amino acid synthetase activity(GO:0052626) vanillate amino acid synthetase activity(GO:0052627) 4-hydroxybenzoate amino acid synthetase activity(GO:0052628)
0.0 0.2 GO:0042132 fructose 1,6-bisphosphate 1-phosphatase activity(GO:0042132)
0.0 0.2 GO:0050664 NAD(P)H oxidase activity(GO:0016174) oxidoreductase activity, acting on NAD(P)H, oxygen as acceptor(GO:0050664)
0.0 0.2 GO:0016920 pyroglutamyl-peptidase activity(GO:0016920)
0.0 0.1 GO:0010331 gibberellin binding(GO:0010331)
0.0 0.3 GO:0019825 oxygen binding(GO:0019825)
0.0 0.1 GO:1990380 Lys48-specific deubiquitinase activity(GO:1990380)
0.0 0.2 GO:0017057 6-phosphogluconolactonase activity(GO:0017057)
0.0 0.2 GO:0030742 GTP-dependent protein binding(GO:0030742)
0.0 0.1 GO:0010291 carotene beta-ring hydroxylase activity(GO:0010291)
0.0 0.2 GO:0004475 mannose-1-phosphate guanylyltransferase activity(GO:0004475)
0.0 0.1 GO:0032404 single base insertion or deletion binding(GO:0032138) single thymine insertion binding(GO:0032143) mismatch repair complex binding(GO:0032404) MutLalpha complex binding(GO:0032405)
0.0 0.3 GO:0009916 alternative oxidase activity(GO:0009916)
0.0 0.1 GO:0000225 N-acetylglucosaminylphosphatidylinositol deacetylase activity(GO:0000225)
0.0 0.1 GO:0004048 anthranilate phosphoribosyltransferase activity(GO:0004048)
0.0 0.2 GO:0003933 GTP cyclohydrolase activity(GO:0003933)
0.0 0.1 GO:0047158 sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158)
0.0 0.3 GO:0033201 starch synthase activity(GO:0009011) alpha-1,4-glucan synthase activity(GO:0033201)
0.0 0.1 GO:0004445 inositol-polyphosphate 5-phosphatase activity(GO:0004445) inositol-1,3,4,5-tetrakisphosphate 5-phosphatase activity(GO:0052659) inositol tetrakisphosphate phosphatase activity(GO:0052743)
0.0 0.1 GO:0004046 aminoacylase activity(GO:0004046)
0.0 0.1 GO:0019789 SUMO transferase activity(GO:0019789)
0.0 0.1 GO:0043140 ATP-dependent 3'-5' DNA helicase activity(GO:0043140) single-stranded DNA-dependent ATP-dependent 3'-5' DNA helicase activity(GO:1990518)
0.0 0.9 GO:0016837 carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570)
0.0 0.2 GO:0004535 poly(A)-specific ribonuclease activity(GO:0004535)
0.0 0.2 GO:0004072 aspartate kinase activity(GO:0004072)
0.0 0.1 GO:0003959 NADPH dehydrogenase activity(GO:0003959)
0.0 0.2 GO:0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity(GO:0045156)
0.0 0.7 GO:0016645 oxidoreductase activity, acting on the CH-NH group of donors(GO:0016645)
0.0 0.1 GO:0080116 glucuronoxylan glucuronosyltransferase activity(GO:0080116)
0.0 0.1 GO:0016712 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced flavin or flavoprotein as one donor, and incorporation of one atom of oxygen(GO:0016712) aromatase activity(GO:0070330)
0.0 0.1 GO:0008661 1-deoxy-D-xylulose-5-phosphate synthase activity(GO:0008661)
0.0 0.1 GO:0000309 nicotinamide-nucleotide adenylyltransferase activity(GO:0000309)
0.0 0.2 GO:0018488 aryl-aldehyde oxidase activity(GO:0018488) indole-3-acetaldehyde oxidase activity(GO:0050302)
0.0 0.2 GO:0005483 soluble NSF attachment protein activity(GO:0005483)
0.0 0.7 GO:0015174 basic amino acid transmembrane transporter activity(GO:0015174)
0.0 0.1 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.0 0.1 GO:0016841 ammonia-lyase activity(GO:0016841)
0.0 0.2 GO:0042171 1-acylglycerol-3-phosphate O-acyltransferase activity(GO:0003841) lysophosphatidic acid acyltransferase activity(GO:0042171)
0.0 0.3 GO:0008453 alanine-glyoxylate transaminase activity(GO:0008453)
0.0 0.1 GO:0047334 diphosphate-fructose-6-phosphate 1-phosphotransferase activity(GO:0047334)
0.0 0.1 GO:0050736 O-malonyltransferase activity(GO:0050736)
0.0 0.7 GO:0008810 cellulase activity(GO:0008810)
0.0 0.1 GO:0004057 arginyltransferase activity(GO:0004057)
0.0 0.1 GO:0016882 cyclo-ligase activity(GO:0016882)
0.0 0.1 GO:0010242 oxygen evolving activity(GO:0010242)
0.0 2.0 GO:0030599 pectinesterase activity(GO:0030599)
0.0 0.6 GO:0016682 oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor(GO:0016682)
0.0 0.1 GO:0036456 L-methionine:thioredoxin-disulfide S-oxidoreductase activity(GO:0033744) L-methionine-(S)-S-oxide reductase activity(GO:0036456)
0.0 0.1 GO:0033897 ribonuclease T2 activity(GO:0033897)
0.0 0.2 GO:0051183 vitamin transporter activity(GO:0051183)
0.0 0.2 GO:0035252 UDP-xylosyltransferase activity(GO:0035252)
0.0 0.1 GO:0015089 high-affinity copper ion transmembrane transporter activity(GO:0015089)
0.0 0.1 GO:0047769 prephenate dehydratase activity(GO:0004664) arogenate dehydratase activity(GO:0047769)
0.0 0.2 GO:0003968 RNA-directed RNA polymerase activity(GO:0003968)
0.0 0.4 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.0 0.2 GO:1990538 xylan O-acetyltransferase activity(GO:1990538)
0.0 0.3 GO:0016833 oxo-acid-lyase activity(GO:0016833)
0.0 0.1 GO:0005047 signal recognition particle binding(GO:0005047)
0.0 0.1 GO:0004679 AMP-activated protein kinase activity(GO:0004679)
0.0 0.1 GO:0005459 UDP-galactose transmembrane transporter activity(GO:0005459)
0.0 0.1 GO:0008839 4-hydroxy-tetrahydrodipicolinate reductase(GO:0008839)
0.0 0.3 GO:0004568 chitinase activity(GO:0004568)
0.0 0.3 GO:0004144 diacylglycerol O-acyltransferase activity(GO:0004144)
0.0 0.1 GO:0050567 glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity(GO:0050567)
0.0 0.1 GO:0008883 glutamyl-tRNA reductase activity(GO:0008883)
0.0 0.4 GO:0004864 protein phosphatase inhibitor activity(GO:0004864)
0.0 0.6 GO:0005385 zinc ion transmembrane transporter activity(GO:0005385)
0.0 0.1 GO:0003997 acyl-CoA oxidase activity(GO:0003997)
0.0 0.6 GO:0004724 magnesium-dependent protein serine/threonine phosphatase activity(GO:0004724)
0.0 0.1 GO:0004478 methionine adenosyltransferase activity(GO:0004478)
0.0 0.3 GO:0005381 iron ion transmembrane transporter activity(GO:0005381)
0.0 0.1 GO:0016884 carbon-nitrogen ligase activity, with glutamine as amido-N-donor(GO:0016884)
0.0 0.1 GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity(GO:0004069)
0.0 0.1 GO:0015120 phosphoglycerate transmembrane transporter activity(GO:0015120) aldonate transmembrane transporter activity(GO:0042879)
0.0 0.3 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.0 GO:0070259 tyrosyl-DNA phosphodiesterase activity(GO:0070259)
0.0 0.2 GO:0004709 MAP kinase kinase kinase activity(GO:0004709)
0.0 1.1 GO:0004197 cysteine-type endopeptidase activity(GO:0004197)
0.0 0.4 GO:0005345 purine nucleobase transmembrane transporter activity(GO:0005345)
0.0 0.1 GO:0004143 diacylglycerol kinase activity(GO:0004143)
0.0 0.1 GO:0052622 ATP dimethylallyltransferase activity(GO:0052622) ADP dimethylallyltransferase activity(GO:0052623)
0.0 0.1 GO:0051920 thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920)
0.0 0.2 GO:0030674 protein binding, bridging(GO:0030674)
0.0 0.1 GO:0004602 glutathione peroxidase activity(GO:0004602)
0.0 0.1 GO:0016040 glutamate synthase activity(GO:0015930) glutamate synthase (NADH) activity(GO:0016040) glutamate synthase activity, NAD(P)H as acceptor(GO:0045181)
0.0 0.1 GO:0070905 glycine hydroxymethyltransferase activity(GO:0004372) serine binding(GO:0070905)
0.0 0.0 GO:0032131 alkylated DNA binding(GO:0032131)
0.0 0.0 GO:0008936 nicotinamidase activity(GO:0008936)
0.0 0.0 GO:0004077 biotin-[acetyl-CoA-carboxylase] ligase activity(GO:0004077) biotin-protein ligase activity(GO:0018271)
0.0 0.1 GO:0008022 protein C-terminus binding(GO:0008022)
0.0 0.6 GO:0004190 aspartic-type endopeptidase activity(GO:0004190)
0.0 0.2 GO:0008137 NADH dehydrogenase (ubiquinone) activity(GO:0008137) NADH dehydrogenase (quinone) activity(GO:0050136)
0.0 0.0 GO:0017077 oxidative phosphorylation uncoupler activity(GO:0017077)
0.0 0.1 GO:0047134 protein-disulfide reductase activity(GO:0047134)
0.0 0.1 GO:0000175 3'-5'-exoribonuclease activity(GO:0000175)
0.0 0.2 GO:0004564 beta-fructofuranosidase activity(GO:0004564)

Gene overrepresentation in curated gene sets: canonical pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.7 PID REG GR PATHWAY Glucocorticoid receptor regulatory network
0.1 0.5 NABA MATRISOME ASSOCIATED Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors
0.1 0.2 PID IL12 2PATHWAY IL12-mediated signaling events

Gene overrepresentation in curated gene sets: REACTOME pathways category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.7 REACTOME GLUCONEOGENESIS Genes involved in Gluconeogenesis
0.1 0.5 REACTOME G1 S SPECIFIC TRANSCRIPTION Genes involved in G1/S-Specific Transcription
0.0 0.2 REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE Genes involved in Dopamine Neurotransmitter Release Cycle
0.0 0.2 REACTOME MHC CLASS II ANTIGEN PRESENTATION Genes involved in MHC class II antigen presentation
0.0 0.1 REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND Genes involved in Removal of the Flap Intermediate from the C-strand
0.0 0.1 REACTOME UNWINDING OF DNA Genes involved in Unwinding of DNA