Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT3G15270
Z-value: 0.73
Transcription factors associated with AT3G15270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G15270
|
AT3G15270 | squamosa promoter binding protein-like 5 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| SPL5 | arTal_v1_Chr3_-_5142323_5142323 | 0.33 | 2.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_23187840_23187840 Show fit | 0.98 |
AT5G57220.1
|
cytochrome P450, family 81, subfamily F, polypeptide 2 |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 0.87 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 0.86 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 0.76 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr5_+_26266180_26266266 Show fit | 0.74 |
AT5G65690.1
AT5G65690.2 AT5G65690.3 AT5G65690.4 |
phosphoenolpyruvate carboxykinase 2 |
|
| arTal_v1_Chr1_-_1702749_1702749 Show fit | 0.71 |
AT1G05675.1
|
UDP-Glycosyltransferase superfamily protein |
|
| arTal_v1_Chr4_+_11934969_11934969 Show fit | 0.70 |
AT4G22710.1
|
cytochrome P450, family 706, subfamily A, polypeptide 2 |
|
| arTal_v1_Chr2_-_12277417_12277417 Show fit | 0.64 |
AT2G28630.2
|
3-ketoacyl-CoA synthase 12 |
|
| arTal_v1_Chr3_+_7770899_7770899 Show fit | 0.64 |
AT3G22060.1
|
Receptor-like protein kinase-related family protein |
|
| arTal_v1_Chr4_+_7434199_7434199 Show fit | 0.64 |
AT4G12545.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G15270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.4 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 2.1 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
| 0.4 | 1.7 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.0 | 1.7 | GO:0009751 | response to salicylic acid(GO:0009751) |
| 0.0 | 1.5 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.2 | 1.3 | GO:0043617 | cellular response to sucrose starvation(GO:0043617) |
| 0.1 | 1.3 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.2 | 1.2 | GO:0006567 | threonine catabolic process(GO:0006567) |
| 0.0 | 1.1 | GO:0048544 | recognition of pollen(GO:0048544) |
| 0.2 | 1.0 | GO:1903175 | fatty alcohol biosynthetic process(GO:1903175) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.2 | 0.9 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.0 | 0.7 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 0.6 | GO:0042406 | extrinsic component of endoplasmic reticulum membrane(GO:0042406) |
| 0.1 | 0.6 | GO:0000322 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.5 | GO:0000137 | Golgi cis cisterna(GO:0000137) |
| 0.1 | 0.4 | GO:0030062 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
| 0.0 | 0.4 | GO:0031305 | integral component of mitochondrial inner membrane(GO:0031305) |
| 0.0 | 0.4 | GO:1902495 | transmembrane transporter complex(GO:1902495) |
| 0.0 | 0.4 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.0 | GO:0030599 | pectinesterase activity(GO:0030599) |
| 0.1 | 1.8 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.1 | 1.8 | GO:0102337 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
| 0.0 | 1.3 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
| 0.2 | 1.1 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
| 0.0 | 1.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
| 0.0 | 1.1 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
| 0.2 | 1.0 | GO:0016629 | 12-oxophytodienoate reductase activity(GO:0016629) |
| 0.2 | 1.0 | GO:0008705 | 5-methyltetrahydropteroyltriglutamate-homocysteine S-methyltransferase activity(GO:0003871) methionine synthase activity(GO:0008705) 5-methyltetrahydrofolate-dependent methyltransferase activity(GO:0042084) 5-methyltetrahydropteroyltri-L-glutamate-dependent methyltransferase activity(GO:0042085) |
| 0.1 | 1.0 | GO:0004066 | asparagine synthase (glutamine-hydrolyzing) activity(GO:0004066) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.7 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.5 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 0.7 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.5 | REACTOME G1 S SPECIFIC TRANSCRIPTION | Genes involved in G1/S-Specific Transcription |
| 0.0 | 0.2 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.2 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.0 | 0.1 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |
| 0.0 | 0.1 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |