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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G15210
Z-value: 1.20
Transcription factors associated with AT3G15210
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G15210
|
AT3G15210 | ethylene responsive element binding factor 4 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| ERF4 | arTal_v1_Chr3_+_5121303_5121303 | -0.07 | 8.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_20891163_20891163 Show fit | 2.42 |
AT5G51440.1
|
HSP20-like chaperones superfamily protein |
|
| arTal_v1_Chr4_+_9698940_9698940 Show fit | 2.25 |
AT4G17340.1
|
tonoplast intrinsic protein 2;2 |
|
| arTal_v1_Chr4_+_12686459_12686459 Show fit | 2.13 |
AT4G24570.1
|
dicarboxylate carrier 2 |
|
| arTal_v1_Chr3_-_18375784_18375784 Show fit | 2.06 |
AT3G49580.3
AT3G49580.2 |
response to low sulfur 1 |
|
| arTal_v1_Chr3_-_18375940_18375940 Show fit | 1.97 |
AT3G49580.1
|
response to low sulfur 1 |
|
| arTal_v1_Chr5_+_23187840_23187840 Show fit | 1.88 |
AT5G57220.1
|
cytochrome P450, family 81, subfamily F, polypeptide 2 |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.86 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr2_-_10454591_10454593 Show fit | 1.80 |
AT2G24600.2
AT2G24600.3 AT2G24600.4 AT2G24600.1 |
Ankyrin repeat family protein |
|
| arTal_v1_Chr1_-_7388512_7388512 Show fit | 1.76 |
AT1G21100.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.74 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G15210
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 19.9 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 17.2 | GO:0036294 | cellular response to decreased oxygen levels(GO:0036294) cellular response to oxygen levels(GO:0071453) cellular response to hypoxia(GO:0071456) |
| 0.8 | 7.9 | GO:0009652 | thigmotropism(GO:0009652) |
| 0.7 | 5.1 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
| 0.2 | 3.7 | GO:0031408 | oxylipin biosynthetic process(GO:0031408) |
| 0.0 | 2.9 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.2 | 2.7 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.2 | 2.6 | GO:0080163 | regulation of protein serine/threonine phosphatase activity(GO:0080163) |
| 0.8 | 2.4 | GO:0071422 | thiosulfate transport(GO:0015709) succinate transmembrane transport(GO:0071422) |
| 0.2 | 2.4 | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 7.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 3.1 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 2.8 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.3 | 2.6 | GO:0009538 | photosystem I reaction center(GO:0009538) |
| 0.1 | 2.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.1 | 2.2 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 1.6 | GO:0016607 | nuclear speck(GO:0016607) |
| 0.1 | 1.4 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.1 | 1.3 | GO:0000786 | nucleosome(GO:0000786) |
| 0.0 | 1.1 | GO:0031201 | SNARE complex(GO:0031201) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 9.9 | GO:0005509 | calcium ion binding(GO:0005509) |
| 0.0 | 3.9 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.0 | 3.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.6 | GO:0004864 | protein phosphatase inhibitor activity(GO:0004864) |
| 0.0 | 2.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.8 | 2.4 | GO:0015117 | thiosulfate transmembrane transporter activity(GO:0015117) |
| 0.0 | 2.3 | GO:0043531 | ADP binding(GO:0043531) |
| 0.1 | 2.1 | GO:0004708 | MAP kinase kinase activity(GO:0004708) |
| 0.6 | 1.9 | GO:0035671 | enone reductase activity(GO:0035671) |
| 0.1 | 1.9 | GO:0016168 | chlorophyll binding(GO:0016168) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.2 | PID MYC ACTIV PATHWAY | Validated targets of C-MYC transcriptional activation |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.7 | REACTOME TRANSCRIPTION | Genes involved in Transcription |
| 0.0 | 0.6 | REACTOME DNA REPAIR | Genes involved in DNA Repair |
| 0.1 | 0.5 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.5 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.1 | 0.3 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.0 | 0.3 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.0 | 0.3 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |