Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT3G15170
Z-value: 0.77
Transcription factors associated with AT3G15170
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G15170
|
AT3G15170 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| CUC1 | arTal_v1_Chr3_+_5109782_5109782 | 0.11 | 7.0e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_-_21992812_21992814 Show fit | 1.51 |
AT5G54190.2
AT5G54190.1 |
protochlorophyllide oxidoreductase A |
|
| arTal_v1_Chr1_+_18546086_18546165 Show fit | 1.43 |
AT1G50050.2
AT1G50050.1 |
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein |
|
| arTal_v1_Chr1_-_10475969_10475969 Show fit | 0.99 |
AT1G29920.1
|
chlorophyll A/B-binding protein 2 |
|
| arTal_v1_Chr5_-_8406132_8406151 Show fit | 0.97 |
AT5G24570.1
AT5G24575.1 |
hypothetical protein hypothetical protein |
|
| arTal_v1_Chr1_-_9275193_9275193 Show fit | 0.96 |
AT1G26790.1
|
Dof-type zinc finger DNA-binding family protein |
|
| arTal_v1_Chr3_+_15983199_15983199 Show fit | 0.92 |
AT3G44300.1
|
nitrilase 2 |
|
| arTal_v1_Chr2_-_12343443_12343443 Show fit | 0.83 |
AT2G28780.1
|
P-hydroxybenzoic acid efflux pump subunit |
|
| arTal_v1_Chr2_+_6893949_6893949 Show fit | 0.80 |
AT2G15830.1
|
hypothetical protein |
|
| arTal_v1_Chr4_+_13725546_13725546 Show fit | 0.79 |
AT4G27440.2
AT4G27440.1 |
protochlorophyllide oxidoreductase B |
|
| arTal_v1_Chr5_-_17626487_17626487 Show fit | 0.73 |
AT5G43840.1
|
heat shock transcription factor A6A |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G15170
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.5 | GO:0009647 | skotomorphogenesis(GO:0009647) |
| 0.0 | 1.4 | GO:0010025 | wax biosynthetic process(GO:0010025) |
| 0.0 | 1.3 | GO:0007018 | microtubule-based movement(GO:0007018) |
| 0.1 | 1.2 | GO:0048496 | maintenance of organ identity(GO:0048496) maintenance of floral organ identity(GO:0048497) |
| 0.2 | 1.1 | GO:0046713 | borate transport(GO:0046713) |
| 0.1 | 1.1 | GO:0009750 | response to fructose(GO:0009750) |
| 0.0 | 1.1 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 1.1 | GO:0015995 | chlorophyll biosynthetic process(GO:0015995) |
| 0.0 | 1.0 | GO:0007166 | cell surface receptor signaling pathway(GO:0007166) |
| 0.0 | 1.0 | GO:0034605 | cellular response to heat(GO:0034605) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.5 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.4 | 1.1 | GO:0016328 | lateral plasma membrane(GO:0016328) |
| 0.0 | 1.1 | GO:0031977 | thylakoid lumen(GO:0031977) |
| 0.1 | 0.5 | GO:0016272 | prefoldin complex(GO:0016272) |
| 0.0 | 0.4 | GO:0010369 | chromocenter(GO:0010369) |
| 0.0 | 0.4 | GO:0005793 | endoplasmic reticulum-Golgi intermediate compartment(GO:0005793) |
| 0.1 | 0.3 | GO:0000812 | Swr1 complex(GO:0000812) |
| 0.0 | 0.3 | GO:0000813 | ESCRT I complex(GO:0000813) |
| 0.0 | 0.3 | GO:0072546 | ER membrane protein complex(GO:0072546) |
| 0.0 | 0.3 | GO:0005834 | heterotrimeric G-protein complex(GO:0005834) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 2.3 | GO:0016630 | protochlorophyllide reductase activity(GO:0016630) |
| 0.0 | 1.2 | GO:0004650 | polygalacturonase activity(GO:0004650) |
| 0.2 | 1.1 | GO:0046715 | borate transmembrane transporter activity(GO:0046715) borate efflux transmembrane transporter activity(GO:0080139) |
| 0.0 | 1.1 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 1.0 | GO:0005337 | nucleoside transmembrane transporter activity(GO:0005337) |
| 0.2 | 0.9 | GO:0080109 | indole-3-acetonitrile nitrile hydratase activity(GO:0080109) |
| 0.0 | 0.9 | GO:0003777 | microtubule motor activity(GO:0003777) |
| 0.1 | 0.8 | GO:0016984 | ribulose-bisphosphate carboxylase activity(GO:0016984) |
| 0.2 | 0.7 | GO:0050577 | GDP-L-fucose synthase activity(GO:0050577) |
| 0.1 | 0.7 | GO:0016847 | 1-aminocyclopropane-1-carboxylate synthase activity(GO:0016847) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.4 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.1 | 0.3 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.0 | 0.2 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.0 | 0.1 | ST ERK1 ERK2 MAPK PATHWAY | ERK1/ERK2 MAPK Pathway |
| 0.0 | 0.1 | SIG CHEMOTAXIS | Genes related to chemotaxis |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.3 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.0 | 0.3 | REACTOME LIPID DIGESTION MOBILIZATION AND TRANSPORT | Genes involved in Lipid digestion, mobilization, and transport |
| 0.0 | 0.3 | REACTOME SRP DEPENDENT COTRANSLATIONAL PROTEIN TARGETING TO MEMBRANE | Genes involved in SRP-dependent cotranslational protein targeting to membrane |
| 0.1 | 0.2 | REACTOME REGULATION OF INSULIN SECRETION | Genes involved in Regulation of Insulin Secretion |
| 0.1 | 0.2 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.0 | 0.2 | REACTOME PYRUVATE METABOLISM AND CITRIC ACID TCA CYCLE | Genes involved in Pyruvate metabolism and Citric Acid (TCA) cycle |
| 0.0 | 0.2 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.0 | 0.2 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.0 | 0.2 | REACTOME METABOLISM OF CARBOHYDRATES | Genes involved in Metabolism of carbohydrates |
| 0.0 | 0.1 | REACTOME NRAGE SIGNALS DEATH THROUGH JNK | Genes involved in NRAGE signals death through JNK |