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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G11280
Z-value: 1.75
Transcription factors associated with AT3G11280
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G11280
|
AT3G11280 | Duplicated homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G11280 | arTal_v1_Chr3_-_3534958_3534994 | -0.60 | 2.2e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_18347765_18347765 Show fit | 3.92 |
AT2G44460.2
|
beta glucosidase 28 |
|
| arTal_v1_Chr2_+_18346306_18346306 Show fit | 3.82 |
AT2G44460.1
|
beta glucosidase 28 |
|
| arTal_v1_Chr1_-_4682309_4682382 Show fit | 3.29 |
AT1G13650.3
AT1G13650.4 AT1G13650.2 AT1G13650.1 |
hypothetical protein |
|
| arTal_v1_Chr1_+_24824356_24824496 Show fit | 2.71 |
AT1G66540.1
AT1G66540.2 |
Cytochrome P450 superfamily protein |
|
| arTal_v1_Chr3_+_22216540_22216540 Show fit | 2.63 |
AT3G60140.2
AT3G60140.1 |
Glycosyl hydrolase superfamily protein |
|
| arTal_v1_Chr1_-_19052582_19052582 Show fit | 2.48 |
AT1G51400.1
|
Photosystem II 5 kD protein |
|
| arTal_v1_Chr1_+_26705420_26705428 Show fit | 2.47 |
AT1G70820.1
AT1G70820.2 |
phosphoglucomutase, putative / glucose phosphomutase |
|
| arTal_v1_Chr2_-_15425129_15425129 Show fit | 2.43 |
AT2G36800.1
|
don-glucosyltransferase 1 |
|
| arTal_v1_Chr4_-_10591546_10591633 Show fit | 2.43 |
AT4G19420.3
AT4G19420.2 AT4G19420.1 |
Pectinacetylesterase family protein |
|
| arTal_v1_Chr3_+_1549446_1549446 Show fit | 2.35 |
AT3G05400.1
|
Major facilitator superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G11280
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.7 | GO:0019762 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.6 | 7.9 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.6 | 4.8 | GO:0009061 | anaerobic respiration(GO:0009061) |
| 0.1 | 4.3 | GO:0009902 | chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667) |
| 0.2 | 4.0 | GO:0009768 | photosynthesis, light harvesting in photosystem I(GO:0009768) |
| 0.4 | 3.3 | GO:0009786 | regulation of asymmetric cell division(GO:0009786) |
| 0.1 | 3.1 | GO:0098754 | detoxification(GO:0098754) |
| 0.1 | 3.1 | GO:0007131 | reciprocal meiotic recombination(GO:0007131) reciprocal DNA recombination(GO:0035825) |
| 0.0 | 2.9 | GO:0045454 | cell redox homeostasis(GO:0045454) |
| 0.6 | 2.5 | GO:0097054 | L-glutamate biosynthetic process(GO:0097054) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 14.8 | GO:0009579 | thylakoid(GO:0009579) |
| 0.2 | 8.2 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 4.8 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.3 | 3.0 | GO:0045252 | oxoglutarate dehydrogenase complex(GO:0045252) |
| 0.1 | 2.8 | GO:0005875 | microtubule associated complex(GO:0005875) |
| 0.0 | 2.6 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 2.0 | GO:0005880 | nuclear microtubule(GO:0005880) |
| 0.0 | 1.9 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.1 | 1.7 | GO:0010598 | NAD(P)H dehydrogenase complex (plastoquinone)(GO:0010598) |
| 0.1 | 1.5 | GO:0009986 | cell surface(GO:0009986) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 9.4 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.1 | 9.4 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.2 | 8.0 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.2 | 4.0 | GO:0016168 | chlorophyll binding(GO:0016168) |
| 0.6 | 3.0 | GO:0004148 | dihydrolipoyl dehydrogenase activity(GO:0004148) |
| 0.0 | 2.7 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.9 | 2.6 | GO:0050403 | trans-zeatin O-beta-D-glucosyltransferase activity(GO:0050403) cis-zeatin O-beta-D-glucosyltransferase activity(GO:0050502) |
| 0.6 | 2.6 | GO:0047158 | sinapoylglucose-sinapoylglucose O-sinapoyltransferase activity(GO:0047158) |
| 0.0 | 2.6 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.0 | 2.6 | GO:0000989 | transcription factor activity, transcription factor binding(GO:0000989) transcription cofactor activity(GO:0003712) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 6.8 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.7 | 2.0 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.2 | 0.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.1 | 0.6 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.0 | 0.2 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.1 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.6 | 9.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.4 | 1.2 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.2 | 1.0 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.2 | 0.8 | REACTOME PROCESSING OF CAPPED INTRON CONTAINING PRE MRNA | Genes involved in Processing of Capped Intron-Containing Pre-mRNA |
| 0.2 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 0.6 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.0 | 0.2 | REACTOME REMOVAL OF THE FLAP INTERMEDIATE FROM THE C STRAND | Genes involved in Removal of the Flap Intermediate from the C-strand |