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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G10800
Z-value: 1.49
Transcription factors associated with AT3G10800
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G10800
|
AT3G10800 | Basic-leucine zipper (bZIP) transcription factor family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| BZIP28 | arTal_v1_Chr3_+_3379168_3379168 | -0.33 | 2.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 4.28 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 4.01 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 3.96 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr1_+_30241452_30241452 Show fit | 2.62 |
AT1G80440.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr1_+_9829261_9829261 Show fit | 2.59 |
AT1G28135.1
|
hypothetical protein |
|
| arTal_v1_Chr2_-_8533779_8533779 Show fit | 2.58 |
AT2G19800.1
|
myo-inositol oxygenase 2 |
|
| arTal_v1_Chr5_-_8186662_8186704 Show fit | 2.56 |
AT5G24160.2
AT5G24160.1 |
squalene monooxygenase 6 |
|
| arTal_v1_Chr1_-_9128568_9128568 Show fit | 2.44 |
AT1G26380.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr2_+_13036814_13036925 Show fit | 2.38 |
AT2G30600.4
AT2G30600.5 AT2G30600.1 AT2G30600.3 |
BTB/POZ domain-containing protein |
|
| arTal_v1_Chr2_+_13037238_13037238 Show fit | 2.33 |
AT2G30600.6
AT2G30600.2 |
BTB/POZ domain-containing protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G10800
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 2.2 | 8.9 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 1.6 | 7.9 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.5 | 5.4 | GO:0009961 | response to 1-aminocyclopropane-1-carboxylic acid(GO:0009961) |
| 0.1 | 5.0 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.4 | 4.5 | GO:0080144 | amino acid homeostasis(GO:0080144) |
| 0.3 | 3.8 | GO:0071712 | ER-associated misfolded protein catabolic process(GO:0071712) |
| 0.1 | 3.0 | GO:0010043 | response to zinc ion(GO:0010043) |
| 0.0 | 2.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.3 | 2.4 | GO:0006552 | leucine catabolic process(GO:0006552) |
| 0.1 | 2.3 | GO:2000031 | regulation of salicylic acid mediated signaling pathway(GO:2000031) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 5.1 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 4.4 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 3.8 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.1 | 2.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.6 | GO:0005795 | Golgi stack(GO:0005795) |
| 0.0 | 1.3 | GO:0071004 | U2-type prespliceosome(GO:0071004) prespliceosome(GO:0071010) |
| 0.4 | 1.2 | GO:0030015 | CCR4-NOT core complex(GO:0030015) |
| 0.4 | 1.1 | GO:0032432 | actin filament bundle(GO:0032432) |
| 0.0 | 1.1 | GO:0035097 | histone methyltransferase complex(GO:0035097) |
| 0.1 | 1.0 | GO:0000153 | cytoplasmic ubiquitin ligase complex(GO:0000153) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.7 | 9.5 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 1.6 | 7.9 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.6 | 4.7 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.5 | 4.4 | GO:0004096 | catalase activity(GO:0004096) |
| 0.1 | 3.8 | GO:0044390 | ubiquitin-like protein conjugating enzyme binding(GO:0044390) |
| 0.3 | 3.2 | GO:0032440 | 2-alkenal reductase [NAD(P)] activity(GO:0032440) |
| 0.4 | 2.9 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 2.5 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.4 | 2.2 | GO:0004792 | thiosulfate sulfurtransferase activity(GO:0004792) |
| 0.1 | 2.1 | GO:0004565 | beta-galactosidase activity(GO:0004565) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 1.8 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.8 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.4 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
| 0.0 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
| 0.0 | 0.1 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |