GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT3G10480
|
AT3G10480 | NAC domain containing protein 50 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
NAC050 | arTal_v1_Chr3_+_3264194_3264194 | -0.78 | 1.0e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr5_+_16441808_16441808 Show fit | 4.42 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
arTal_v1_Chr5_+_16441655_16441655 Show fit | 4.37 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
arTal_v1_Chr4_+_2449434_2449434 Show fit | 4.32 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
arTal_v1_Chr4_-_14827211_14827211 Show fit | 3.90 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
arTal_v1_Chr3_-_11194897_11194993 Show fit | 3.80 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
arTal_v1_Chr5_+_6833564_6833659 Show fit | 3.79 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
arTal_v1_Chr1_-_8075037_8075037 Show fit | 3.74 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
arTal_v1_Chr4_+_13128394_13128394 Show fit | 3.50 |
AT4G25810.1
|
xyloglucan endotransglycosylase 6 |
|
arTal_v1_Chr1_-_4835089_4835089 Show fit | 3.41 |
AT1G14120.2
AT1G14120.1 AT1G14120.3 |
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
arTal_v1_Chr5_+_9200271_9200271 Show fit | 3.00 |
AT5G26260.1
|
TRAF-like family protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.2 | 13.6 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
2.2 | 9.0 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
1.3 | 8.0 | GO:0006567 | threonine catabolic process(GO:0006567) |
0.1 | 7.9 | GO:0009860 | pollen tube growth(GO:0009860) |
0.4 | 6.3 | GO:0006026 | aminoglycan catabolic process(GO:0006026) chitin metabolic process(GO:0006030) chitin catabolic process(GO:0006032) amino sugar catabolic process(GO:0046348) glucosamine-containing compound catabolic process(GO:1901072) |
0.2 | 6.2 | GO:0005992 | trehalose biosynthetic process(GO:0005992) |
0.1 | 6.2 | GO:0002239 | response to oomycetes(GO:0002239) |
1.6 | 4.8 | GO:0015840 | urea transport(GO:0015840) |
0.9 | 4.5 | GO:0019310 | inositol catabolic process(GO:0019310) |
0.1 | 4.5 | GO:0045490 | pectin catabolic process(GO:0045490) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 95.4 | GO:0005576 | extracellular region(GO:0005576) |
0.1 | 24.5 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.2 | 5.4 | GO:0045177 | apical part of cell(GO:0045177) |
0.4 | 4.8 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
0.1 | 4.8 | GO:0090406 | pollen tube(GO:0090406) |
0.0 | 4.8 | GO:0044421 | extracellular region part(GO:0044421) |
0.4 | 4.0 | GO:0048226 | Casparian strip(GO:0048226) |
0.0 | 3.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.3 | 3.6 | GO:0005880 | nuclear microtubule(GO:0005880) |
0.1 | 3.3 | GO:0000118 | histone deacetylase complex(GO:0000118) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.1 | 8.6 | GO:0033946 | xyloglucan-specific endo-beta-1,4-glucanase activity(GO:0033946) |
0.4 | 8.2 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
0.6 | 8.1 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
1.6 | 8.0 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
0.2 | 6.9 | GO:0008810 | cellulase activity(GO:0008810) |
0.3 | 6.6 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
0.2 | 6.6 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
0.1 | 6.5 | GO:0016759 | cellulose synthase activity(GO:0016759) |
0.1 | 5.8 | GO:0004252 | serine-type endopeptidase activity(GO:0004252) |
0.1 | 5.6 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 3.0 | PID CASPASE PATHWAY | Caspase cascade in apoptosis |
0.9 | 2.7 | PID AURORA A PATHWAY | Aurora A signaling |
0.6 | 1.7 | PID IL12 2PATHWAY | IL12-mediated signaling events |
0.2 | 0.7 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
0.1 | 0.4 | PID P73PATHWAY | p73 transcription factor network |
0.1 | 0.3 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
0.0 | 0.1 | PID AVB3 OPN PATHWAY | Osteopontin-mediated events |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
1.0 | 3.0 | REACTOME NOD1 2 SIGNALING PATHWAY | Genes involved in NOD1/2 Signaling Pathway |
0.5 | 2.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
0.4 | 2.0 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
0.2 | 1.9 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
0.2 | 1.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
0.1 | 0.6 | REACTOME NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Neurotransmitter Release Cycle |
0.1 | 0.5 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
0.1 | 0.2 | REACTOME MEIOTIC SYNAPSIS | Genes involved in Meiotic Synapsis |
0.0 | 0.1 | REACTOME SIGNALING BY PDGF | Genes involved in Signaling by PDGF |
0.0 | 0.0 | REACTOME SPHINGOLIPID DE NOVO BIOSYNTHESIS | Genes involved in Sphingolipid de novo biosynthesis |