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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G10113
Z-value: 0.82
Transcription factors associated with AT3G10113
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G10113
|
AT3G10113 | Homeodomain-like superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G10113 | arTal_v1_Chr3_-_3119391_3119391 | -0.06 | 8.4e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr4_-_12337599_12337599 Show fit | 1.28 |
AT4G23680.1
|
Polyketide cyclase/dehydrase and lipid transport superfamily protein |
|
| arTal_v1_Chr5_-_15135169_15135169 Show fit | 1.26 |
AT5G37990.1
|
S-adenosyl-L-methionine-dependent methyltransferase superfamily protein |
|
| arTal_v1_Chr4_+_2449434_2449434 Show fit | 1.17 |
AT4G04840.1
|
methionine sulfoxide reductase B6 |
|
| arTal_v1_Chr1_-_7553975_7553975 Show fit | 1.15 |
AT1G21550.1
|
Calcium-binding EF-hand family protein |
|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.11 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_16441808_16441808 Show fit | 1.11 |
AT5G41080.2
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 1.10 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr5_+_16441655_16441655 Show fit | 1.09 |
AT5G41080.1
|
PLC-like phosphodiesterases superfamily protein |
|
| arTal_v1_Chr1_+_28053030_28053030 Show fit | 1.04 |
AT1G74670.1
|
Gibberellin-regulated family protein |
|
| arTal_v1_Chr5_+_19183523_19183571 Show fit | 1.03 |
AT5G47240.2
AT5G47240.1 |
nudix hydrolase homolog 8 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G10113
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 13.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 9.9 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 3.3 | GO:0030091 | protein repair(GO:0030091) |
| 0.2 | 3.1 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.7 | 2.8 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.2 | 2.6 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.0 | 2.6 | GO:0045944 | positive regulation of transcription from RNA polymerase II promoter(GO:0045944) |
| 0.5 | 2.4 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.5 | 2.2 | GO:0046475 | glycerophospholipid catabolic process(GO:0046475) |
| 0.3 | 2.2 | GO:0010438 | cellular response to sulfur starvation(GO:0010438) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.8 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 1.9 | GO:0010319 | stromule(GO:0010319) |
| 0.1 | 1.4 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.3 | 1.3 | GO:0035061 | interchromatin granule(GO:0035061) |
| 0.1 | 1.0 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.0 | 1.0 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.0 | 0.9 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 0.8 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 0.7 | GO:0071004 | U2-type prespliceosome(GO:0071004) prespliceosome(GO:0071010) |
| 0.1 | 0.6 | GO:0000243 | commitment complex(GO:0000243) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.8 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.0 | 4.0 | GO:0001159 | core promoter proximal region sequence-specific DNA binding(GO:0000987) core promoter proximal region DNA binding(GO:0001159) |
| 0.3 | 3.2 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 2.8 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.0 | 2.7 | GO:0000977 | RNA polymerase II regulatory region sequence-specific DNA binding(GO:0000977) RNA polymerase II regulatory region DNA binding(GO:0001012) |
| 0.5 | 2.4 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.2 | 2.3 | GO:0008889 | glycerophosphodiester phosphodiesterase activity(GO:0008889) |
| 0.0 | 2.3 | GO:0015144 | carbohydrate transmembrane transporter activity(GO:0015144) |
| 0.1 | 2.2 | GO:0032934 | sterol binding(GO:0032934) |
| 0.0 | 2.0 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.8 | NABA MATRISOME ASSOCIATED | Ensemble of genes encoding ECM-associated proteins including ECM-affilaited proteins, ECM regulators and secreted factors |
| 0.1 | 0.6 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.2 | 0.5 | SA CASPASE CASCADE | Apoptosis is mediated by caspases, cysteine proteases arranged in a proteolytic cascade. |
| 0.0 | 0.3 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.2 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.0 | 0.2 | PID HIF1A PATHWAY | Hypoxic and oxygen homeostasis regulation of HIF-1-alpha |
| 0.0 | 0.2 | PID ATM PATHWAY | ATM pathway |
| 0.1 | 0.1 | PID AMB2 NEUTROPHILS PATHWAY | amb2 Integrin signaling |
| 0.1 | 0.1 | PID MTOR 4PATHWAY | mTOR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.7 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.6 | REACTOME MEIOTIC RECOMBINATION | Genes involved in Meiotic Recombination |
| 0.2 | 0.5 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.4 | REACTOME APOPTOTIC EXECUTION PHASE | Genes involved in Apoptotic execution phase |
| 0.1 | 0.4 | REACTOME FORMATION OF TUBULIN FOLDING INTERMEDIATES BY CCT TRIC | Genes involved in Formation of tubulin folding intermediates by CCT/TriC |
| 0.1 | 0.3 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.3 | REACTOME GENERIC TRANSCRIPTION PATHWAY | Genes involved in Generic Transcription Pathway |
| 0.1 | 0.2 | REACTOME OXYGEN DEPENDENT PROLINE HYDROXYLATION OF HYPOXIA INDUCIBLE FACTOR ALPHA | Genes involved in Oxygen-dependent Proline Hydroxylation of Hypoxia-inducible Factor Alpha |
| 0.0 | 0.2 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |