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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G10030
Z-value: 1.22
Transcription factors associated with AT3G10030
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G10030
|
AT3G10030 | aspartate/glutamate/uridylate kinase family protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G10030 | arTal_v1_Chr3_-_3094945_3095025 | -0.77 | 1.4e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 2.11 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_+_26772644_26772644 Show fit | 1.99 |
AT5G67080.1
|
mitogen-activated protein kinase kinase kinase 19 |
|
| arTal_v1_Chr3_-_11194897_11194993 Show fit | 1.83 |
AT3G29250.2
AT3G29250.1 |
NAD(P)-binding Rossmann-fold superfamily protein |
|
| arTal_v1_Chr4_-_9754161_9754161 Show fit | 1.69 |
AT4G17490.1
|
ethylene responsive element binding factor 6 |
|
| arTal_v1_Chr3_+_22129505_22129505 Show fit | 1.58 |
AT3G59900.1
|
auxin-regulated gene involved in organ size |
|
| arTal_v1_Chr1_-_749034_749034 Show fit | 1.56 |
AT1G03106.1
|
hypothetical protein |
|
| arTal_v1_Chr5_+_4370692_4370692 Show fit | 1.46 |
AT5G13580.1
|
ABC-2 type transporter family protein |
|
| arTal_v1_Chr2_+_19508929_19508929 Show fit | 1.40 |
AT2G47550.1
|
Plant invertase/pectin methylesterase inhibitor superfamily |
|
| arTal_v1_Chr5_+_84474_84474 Show fit | 1.40 |
AT5G01210.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr2_-_7768040_7768040 Show fit | 1.39 |
AT2G17880.1
|
Chaperone DnaJ-domain superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G10030
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.3 | GO:0009873 | ethylene-activated signaling pathway(GO:0009873) |
| 0.0 | 4.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
| 0.0 | 3.9 | GO:0080167 | response to karrikin(GO:0080167) |
| 0.1 | 3.6 | GO:0010114 | response to red light(GO:0010114) |
| 0.0 | 3.5 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.1 | 2.5 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 2.2 | GO:0003333 | amino acid transmembrane transport(GO:0003333) |
| 0.2 | 2.1 | GO:0051865 | protein autoubiquitination(GO:0051865) |
| 0.0 | 1.9 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 1.8 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.1 | 0.8 | GO:0045298 | tubulin complex(GO:0045298) |
| 0.1 | 0.6 | GO:0044613 | nuclear pore central transport channel(GO:0044613) |
| 0.1 | 0.4 | GO:0001673 | male germ cell nucleus(GO:0001673) |
| 0.0 | 0.3 | GO:0070971 | endoplasmic reticulum exit site(GO:0070971) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.2 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.1 | 3.1 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
| 0.0 | 3.0 | GO:0019901 | protein kinase binding(GO:0019901) |
| 0.0 | 2.9 | GO:0005507 | copper ion binding(GO:0005507) |
| 0.0 | 2.6 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.3 | 2.4 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.0 | 2.2 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 2.0 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 1.8 | GO:0030570 | carbon-oxygen lyase activity, acting on polysaccharides(GO:0016837) pectate lyase activity(GO:0030570) |
| 0.1 | 1.6 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.0 | 0.2 | PID MYC PATHWAY | C-MYC pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.5 | REACTOME FATTY ACID TRIACYLGLYCEROL AND KETONE BODY METABOLISM | Genes involved in Fatty acid, triacylglycerol, and ketone body metabolism |
| 0.0 | 0.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.1 | 0.2 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |