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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G09735
Z-value: 1.28
Transcription factors associated with AT3G09735
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G09735
|
AT3G09735 | S1FA-like DNA-binding protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| AT3G09735 | arTal_v1_Chr3_-_2987990_2987990 | 0.10 | 7.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_5209717_5209717 Show fit | 2.67 |
AT5G15960.1
|
stress-responsive protein (KIN1) / stress-induced protein (KIN1) |
|
| arTal_v1_Chr1_+_3019639_3019639 Show fit | 1.75 |
AT1G09350.1
|
galactinol synthase 3 |
|
| arTal_v1_Chr1_+_28975255_28975255 Show fit | 1.64 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
| arTal_v1_Chr1_+_3020221_3020221 Show fit | 1.62 |
AT1G09350.2
|
galactinol synthase 3 |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 1.61 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 1.57 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr2_-_19370478_19370478 Show fit | 1.52 |
AT2G47180.1
|
galactinol synthase 1 |
|
| arTal_v1_Chr4_+_14954204_14954204 Show fit | 1.49 |
AT4G30650.1
|
Low temperature and salt responsive protein family |
|
| arTal_v1_Chr3_-_489467_489467 Show fit | 1.49 |
AT3G02380.1
|
CONSTANS-like 2 |
|
| arTal_v1_Chr5_-_8444101_8444101 Show fit | 1.40 |
AT5G24660.1
|
response to low sulfur 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G09735
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.7 | GO:0006012 | galactose metabolic process(GO:0006012) |
| 0.1 | 4.5 | GO:0010286 | heat acclimation(GO:0010286) |
| 0.1 | 3.8 | GO:0071489 | cellular response to red or far red light(GO:0071489) |
| 0.1 | 3.7 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.1 | 3.5 | GO:0019759 | S-glycoside catabolic process(GO:0016145) glycosinolate catabolic process(GO:0019759) glucosinolate catabolic process(GO:0019762) |
| 0.1 | 3.3 | GO:0051667 | chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667) |
| 0.1 | 3.0 | GO:0045036 | protein targeting to chloroplast(GO:0045036) establishment of protein localization to chloroplast(GO:0072596) |
| 0.1 | 2.8 | GO:0009644 | response to high light intensity(GO:0009644) |
| 0.5 | 2.6 | GO:0019419 | sulfate reduction(GO:0019419) |
| 0.4 | 2.5 | GO:0055129 | L-proline biosynthetic process(GO:0055129) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 24.2 | GO:0044434 | chloroplast part(GO:0044434) |
| 0.1 | 3.6 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
| 0.0 | 3.5 | GO:0019005 | SCF ubiquitin ligase complex(GO:0019005) |
| 0.0 | 3.3 | GO:0044215 | host(GO:0018995) host cell part(GO:0033643) host intracellular part(GO:0033646) host intracellular organelle(GO:0033647) host intracellular membrane-bounded organelle(GO:0033648) host cell nucleus(GO:0042025) intracellular region of host(GO:0043656) host cell(GO:0043657) other organism(GO:0044215) other organism cell(GO:0044216) other organism part(GO:0044217) |
| 0.0 | 3.2 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
| 0.0 | 3.1 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 2.9 | GO:0031969 | chloroplast membrane(GO:0031969) |
| 0.0 | 2.8 | GO:0005730 | nucleolus(GO:0005730) |
| 0.0 | 1.9 | GO:0009543 | chloroplast thylakoid lumen(GO:0009543) plastid thylakoid lumen(GO:0031978) |
| 0.0 | 1.8 | GO:0016604 | nuclear body(GO:0016604) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 6.0 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.6 | 5.0 | GO:0047216 | inositol 3-alpha-galactosyltransferase activity(GO:0047216) |
| 0.1 | 4.7 | GO:0003724 | RNA helicase activity(GO:0003724) |
| 0.0 | 3.4 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 3.3 | GO:0061630 | ubiquitin protein ligase activity(GO:0061630) |
| 0.0 | 3.3 | GO:0019787 | ubiquitin-like protein transferase activity(GO:0019787) |
| 0.0 | 2.9 | GO:0042393 | histone binding(GO:0042393) |
| 0.3 | 2.8 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.1 | 2.8 | GO:0102483 | scopolin beta-glucosidase activity(GO:0102483) |
| 0.0 | 2.7 | GO:0051082 | unfolded protein binding(GO:0051082) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.3 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.4 | 1.1 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
| 0.2 | 0.7 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
| 0.2 | 0.6 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.1 | 0.5 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
| 0.1 | 0.4 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.4 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.4 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.4 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
| 0.0 | 0.4 | PID RAC1 PATHWAY | RAC1 signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 1.4 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
| 0.0 | 1.0 | REACTOME METABOLISM OF LIPIDS AND LIPOPROTEINS | Genes involved in Metabolism of lipids and lipoproteins |
| 0.0 | 1.0 | REACTOME ABC FAMILY PROTEINS MEDIATED TRANSPORT | Genes involved in ABC-family proteins mediated transport |
| 0.1 | 0.8 | REACTOME METABOLISM OF VITAMINS AND COFACTORS | Genes involved in Metabolism of vitamins and cofactors |
| 0.2 | 0.7 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.1 | 0.7 | REACTOME HOST INTERACTIONS OF HIV FACTORS | Genes involved in Host Interactions of HIV factors |
| 0.1 | 0.6 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
| 0.1 | 0.6 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
| 0.2 | 0.5 | REACTOME G2 M DNA DAMAGE CHECKPOINT | Genes involved in G2/M DNA damage checkpoint |
| 0.1 | 0.5 | REACTOME GLYCEROPHOSPHOLIPID BIOSYNTHESIS | Genes involved in Glycerophospholipid biosynthesis |