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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT3G08500

Z-value: 0.47

Transcription factors associated with AT3G08500

Gene Symbol Gene ID Gene Info
AT3G08500 myb domain protein 83

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
MYB83arTal_v1_Chr3_-_2578276_25782760.516.3e-02Click!

Activity profile of AT3G08500 motif

Sorted Z-values of AT3G08500 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr1_-_28302728 0.78 AT1G75410.3
AT1G75410.1
BEL1-like homeodomain 3
Chr2_-_15560755 0.74 AT2G37040.1
PHE ammonia lyase 1
Chr1_-_28302571 0.68 AT1G75410.2
BEL1-like homeodomain 3
Chr4_+_16310768 0.61 AT4G34050.1
AT4G34050.2
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr5_+_9033204 0.61 AT5G25890.1
indole-3-acetic acid inducible 28
Chr4_+_16310409 0.58 AT4G34050.3
S-adenosyl-L-methionine-dependent methyltransferases superfamily protein
Chr1_-_6812757 0.44 AT1G19700.3
AT1G19700.1
BEL1-like homeodomain 10
Chr3_+_6744377 0.43 AT3G19450.1
GroES-like zinc-binding alcohol dehydrogenase family protein
Chr4_-_16533362 0.41 AT4G34610.1
AT4G34610.3
BEL1-like homeodomain 6
Chr1_+_23337167 0.40 AT1G62990.1
homeobox knotted-like protein
Chr4_-_16533001 0.40 AT4G34610.2
AT4G34610.4
BEL1-like homeodomain 6
Chr1_-_19161552 0.39 AT1G51680.3
AT1G51680.2
4-coumarate:CoA ligase 1
Chr1_-_6811994 0.39 AT1G19700.2
BEL1-like homeodomain 10
Chr1_-_19161737 0.35 AT1G51680.1
4-coumarate:CoA ligase 1
Chr1_-_6812523 0.33 AT1G19700.4
BEL1-like homeodomain 10
Chr1_-_6813063 0.28 AT1G19700.5
BEL1-like homeodomain 10
Chr4_-_16662549 0.28 AT4G34990.1
myb domain protein 32
Chr4_-_10316886 0.28 AT4G18780.1
cellulose synthase family protein
Chr4_+_17369179 0.27 AT4G36870.3
AT4G36870.1
AT4G36870.4
BEL1-like homeodomain 2
Chr2_-_12996012 0.22 AT2G30490.1
cinnamate-4-hydroxylase
Chr4_+_18053360 0.19 AT4G38620.1
myb domain protein 4
Chr2_-_7256831 0.19 AT2G16720.1
myb domain protein 7
Chr1_-_24171502 0.17 AT1G65060.2
AT1G65060.1
4-coumarate:CoA ligase 3
Chr3_+_3203988 0.17 AT3G10340.1
phenylalanine ammonia-lyase 4
Chr1_+_6177481 0.15 AT1G17950.1
myb domain protein 52
Chr4_+_17368915 0.11 AT4G36870.2
BEL1-like homeodomain 2
Chr1_-_5631088 0.09 AT1G16490.1
myb domain protein 58
Chr1_+_29786495 0.08 AT1G79180.2
myb domain protein 63
Chr1_+_29786257 0.04 AT1G79180.1
myb domain protein 63

Network of associatons between targets according to the STRING database.

First level regulatory network of AT3G08500

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.4 1.2 GO:0009805 coumarin biosynthetic process(GO:0009805)
0.2 0.9 GO:0009800 cinnamic acid biosynthetic process(GO:0009800)
0.1 0.3 GO:0010116 positive regulation of abscisic acid biosynthetic process(GO:0010116)
0.0 0.4 GO:0048363 mucilage pectin metabolic process(GO:0048363)
0.0 0.2 GO:1900384 regulation of flavonol biosynthetic process(GO:1900384)
0.0 1.5 GO:0048506 regulation of timing of meristematic phase transition(GO:0048506) regulation of timing of transition from vegetative to reproductive phase(GO:0048510)
0.0 0.4 GO:0010192 mucilage biosynthetic process(GO:0010192)
0.0 0.1 GO:1901348 positive regulation of secondary cell wall biogenesis(GO:1901348)
0.0 1.7 GO:0009698 phenylpropanoid metabolic process(GO:0009698)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.0 4.5 GO:0000790 nuclear chromatin(GO:0000790)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.3 1.2 GO:0042409 caffeoyl-CoA O-methyltransferase activity(GO:0042409)
0.2 0.9 GO:0045548 phenylalanine ammonia-lyase activity(GO:0045548)
0.1 0.9 GO:0016207 4-coumarate-CoA ligase activity(GO:0016207)
0.0 4.6 GO:0000978 RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978)
0.0 0.4 GO:0052747 sinapyl alcohol dehydrogenase activity(GO:0052747)