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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G06490
Z-value: 1.03
Transcription factors associated with AT3G06490
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G06490
|
AT3G06490 | myb domain protein 108 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB108 | arTal_v1_Chr3_+_2003393_2003393 | -0.82 | 3.7e-04 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_19183523_19183571 Show fit | 1.54 |
AT5G47240.2
AT5G47240.1 |
nudix hydrolase homolog 8 |
|
| arTal_v1_Chr1_+_29130375_29130375 Show fit | 1.51 |
AT1G77520.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr1_-_24558322_24558322 Show fit | 1.43 |
AT1G65970.1
|
thioredoxin-dependent peroxidase 2 |
|
| arTal_v1_Chr1_-_4970311_4970311 Show fit | 1.29 |
AT1G14520.1
AT1G14520.3 AT1G14520.4 |
myo-inositol oxygenase 1 |
|
| arTal_v1_Chr5_-_8175431_8175525 Show fit | 1.23 |
AT5G24150.2
AT5G24150.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
| arTal_v1_Chr2_-_15421866_15421866 Show fit | 1.22 |
AT2G36790.1
|
UDP-glucosyl transferase 73C6 |
|
| arTal_v1_Chr1_+_11928757_11928757 Show fit | 1.20 |
AT1G32920.1
|
hypothetical protein |
|
| arTal_v1_Chr3_-_21293158_21293171 Show fit | 1.20 |
AT3G57520.2
AT3G57520.3 AT3G57520.1 |
seed imbibition 2 |
|
| arTal_v1_Chr3_-_2130451_2130451 Show fit | 1.15 |
AT3G06750.1
|
hydroxyproline-rich glycoprotein family protein |
|
| arTal_v1_Chr3_+_5692607_5692607 Show fit | 1.15 |
AT3G16720.1
|
TOXICOS EN LEVADURA 2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G06490
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.4 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.0 | 3.7 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 2.3 | GO:0010927 | pollen wall assembly(GO:0010208) cellular component assembly involved in morphogenesis(GO:0010927) extracellular matrix assembly(GO:0085029) |
| 0.0 | 2.2 | GO:0009611 | response to wounding(GO:0009611) |
| 0.4 | 2.1 | GO:0019310 | inositol catabolic process(GO:0019310) |
| 0.4 | 1.7 | GO:0080170 | hydrogen peroxide transmembrane transport(GO:0080170) |
| 0.0 | 1.7 | GO:0043622 | cortical microtubule organization(GO:0043622) |
| 0.5 | 1.4 | GO:0060236 | regulation of mitotic spindle organization(GO:0060236) regulation of spindle organization(GO:0090224) |
| 0.4 | 1.3 | GO:0000032 | cell wall mannoprotein biosynthetic process(GO:0000032) mannoprotein metabolic process(GO:0006056) mannoprotein biosynthetic process(GO:0006057) cell wall glycoprotein biosynthetic process(GO:0031506) |
| 0.1 | 1.3 | GO:0015833 | oligopeptide transport(GO:0006857) peptide transport(GO:0015833) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 1.7 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 1.6 | GO:0072686 | mitotic spindle(GO:0072686) |
| 0.1 | 1.5 | GO:0016602 | CCAAT-binding factor complex(GO:0016602) |
| 0.0 | 1.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.3 | 0.9 | GO:0043667 | pollen wall(GO:0043667) exine(GO:0043668) sexine(GO:0043673) columella(GO:0043674) |
| 0.0 | 0.9 | GO:0005689 | U12-type spliceosomal complex(GO:0005689) |
| 0.1 | 0.8 | GO:0000326 | storage vacuole(GO:0000322) protein storage vacuole(GO:0000326) |
| 0.0 | 0.8 | GO:0005811 | lipid particle(GO:0005811) |
| 0.0 | 0.8 | GO:0009706 | chloroplast inner membrane(GO:0009706) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.4 | 2.1 | GO:0050113 | inositol oxygenase activity(GO:0050113) |
| 0.1 | 2.0 | GO:0047631 | ADP-ribose diphosphatase activity(GO:0047631) |
| 0.0 | 1.5 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.1 | 1.4 | GO:0051920 | thioredoxin peroxidase activity(GO:0008379) peroxiredoxin activity(GO:0051920) |
| 0.4 | 1.3 | GO:0004476 | mannose-6-phosphate isomerase activity(GO:0004476) |
| 0.3 | 1.3 | GO:0005355 | glucose transmembrane transporter activity(GO:0005355) |
| 0.0 | 1.3 | GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706) |
| 0.4 | 1.2 | GO:0004557 | alpha-galactosidase activity(GO:0004557) raffinose alpha-galactosidase activity(GO:0052692) |
| 0.2 | 1.2 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.2 | 1.2 | GO:0080046 | quercetin 4'-O-glucosyltransferase activity(GO:0080046) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 1.4 | PID AURORA A PATHWAY | Aurora A signaling |
| 0.1 | 0.6 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.0 | 0.1 | SIG INSULIN RECEPTOR PATHWAY IN CARDIAC MYOCYTES | Genes related to the insulin receptor pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.3 | 0.8 | REACTOME AMINO ACID SYNTHESIS AND INTERCONVERSION TRANSAMINATION | Genes involved in Amino acid synthesis and interconversion (transamination) |
| 0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
| 0.1 | 0.3 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.0 | 0.2 | REACTOME CLASS I MHC MEDIATED ANTIGEN PROCESSING PRESENTATION | Genes involved in Class I MHC mediated antigen processing & presentation |
| 0.0 | 0.1 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS | Genes involved in Synthesis of bile acids and bile salts |
| 0.0 | 0.1 | REACTOME FORMATION OF INCISION COMPLEX IN GG NER | Genes involved in Formation of incision complex in GG-NER |
| 0.0 | 0.1 | REACTOME SIGNALING BY ROBO RECEPTOR | Genes involved in Signaling by Robo receptor |