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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G03200
Z-value: 1.01
Transcription factors associated with AT3G03200
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G03200
|
AT3G03200 | NAC domain containing protein 45 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NAC045 | arTal_v1_Chr3_-_738629_738629 | -0.35 | 2.2e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_7845923_7845999 Show fit | 1.69 |
AT2G18050.2
AT2G18050.1 |
histone H1-3 |
|
| arTal_v1_Chr2_-_15421866_15421866 Show fit | 1.25 |
AT2G36790.1
|
UDP-glucosyl transferase 73C6 |
|
| arTal_v1_Chr3_+_4729399_4729438 Show fit | 1.18 |
AT3G14210.1
AT3G14210.2 |
GDSL-like lipase/acylhydrolase superfamily protein |
|
| arTal_v1_Chr3_-_2699257_2699257 Show fit | 1.10 |
AT3G08860.2
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr3_-_2699420_2699420 Show fit | 1.09 |
AT3G08860.1
|
PYRIMIDINE 4 |
|
| arTal_v1_Chr4_+_11150049_11150049 Show fit | 0.99 |
AT4G20820.1
|
FAD-binding Berberine family protein |
|
| arTal_v1_Chr3_+_8918679_8918679 Show fit | 0.98 |
AT3G24500.2
|
multiprotein bridging factor 1C |
|
| arTal_v1_Chr1_+_24472873_24472873 Show fit | 0.98 |
AT1G65800.1
AT1G65800.2 |
receptor kinase 2 |
|
| arTal_v1_Chr2_-_7919345_7919345 Show fit | 0.95 |
AT2G18193.1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
|
| arTal_v1_Chr2_-_15412064_15412064 Show fit | 0.95 |
AT2G36750.1
|
UDP-glucosyl transferase 73C1 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G03200
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 4.7 | GO:0009816 | defense response to bacterium, incompatible interaction(GO:0009816) |
| 0.1 | 2.8 | GO:0009773 | photosynthetic electron transport in photosystem I(GO:0009773) |
| 0.0 | 2.5 | GO:0009411 | response to UV(GO:0009411) |
| 0.3 | 2.3 | GO:0031936 | negative regulation of chromatin silencing(GO:0031936) |
| 0.3 | 2.3 | GO:0051513 | regulation of monopolar cell growth(GO:0051513) |
| 0.1 | 2.3 | GO:0051667 | chloroplast relocation(GO:0009902) establishment of plastid localization(GO:0051667) |
| 0.0 | 2.2 | GO:0006457 | protein folding(GO:0006457) |
| 0.0 | 2.1 | GO:0043562 | cellular response to nitrogen levels(GO:0043562) |
| 0.0 | 2.1 | GO:0006972 | hyperosmotic response(GO:0006972) |
| 0.4 | 1.9 | GO:0019419 | sulfate reduction(GO:0019419) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 14.7 | GO:0009534 | chloroplast thylakoid(GO:0009534) |
| 0.0 | 10.8 | GO:0009941 | chloroplast envelope(GO:0009941) |
| 0.0 | 3.9 | GO:0005777 | peroxisome(GO:0005777) microbody(GO:0042579) |
| 0.0 | 3.8 | GO:0009570 | chloroplast stroma(GO:0009570) |
| 0.0 | 3.6 | GO:0005730 | nucleolus(GO:0005730) |
| 0.1 | 2.7 | GO:0009654 | photosystem II oxygen evolving complex(GO:0009654) |
| 0.0 | 2.6 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 2.5 | GO:0099503 | secretory vesicle(GO:0099503) |
| 0.1 | 2.4 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 2.0 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 4.9 | GO:0043531 | ADP binding(GO:0043531) |
| 0.0 | 3.6 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.1 | 3.3 | GO:0003713 | transcription coactivator activity(GO:0003713) |
| 0.1 | 3.1 | GO:0050135 | NAD(P)+ nucleosidase activity(GO:0050135) |
| 0.0 | 2.9 | GO:0003779 | actin binding(GO:0003779) |
| 0.0 | 2.7 | GO:0042393 | histone binding(GO:0042393) |
| 0.4 | 2.5 | GO:0016781 | phosphotransferase activity, paired acceptors(GO:0016781) |
| 0.2 | 2.4 | GO:0008453 | alanine-glyoxylate transaminase activity(GO:0008453) |
| 0.3 | 2.3 | GO:0009882 | blue light photoreceptor activity(GO:0009882) |
| 0.2 | 2.2 | GO:0009815 | 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.1 | NABA CORE MATRISOME | Ensemble of genes encoding core extracellular matrix including ECM glycoproteins, collagens and proteoglycans |
| 0.2 | 1.0 | PID CIRCADIAN PATHWAY | Circadian rhythm pathway |
| 0.1 | 0.5 | PID P53 REGULATION PATHWAY | p53 pathway |
| 0.1 | 0.5 | PID AP1 PATHWAY | AP-1 transcription factor network |
| 0.0 | 0.4 | PID E2F PATHWAY | E2F transcription factor network |
| 0.1 | 0.3 | PID VEGF VEGFR PATHWAY | VEGF and VEGFR signaling network |
| 0.1 | 0.2 | PID ATF2 PATHWAY | ATF-2 transcription factor network |
| 0.1 | 0.2 | PID P38 ALPHA BETA DOWNSTREAM PATHWAY | Signaling mediated by p38-alpha and p38-beta |
| 0.0 | 0.2 | PID S1P S1P1 PATHWAY | S1P1 pathway |
| 0.1 | 0.1 | PID AURORA A PATHWAY | Aurora A signaling |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.0 | REACTOME BMAL1 CLOCK NPAS2 ACTIVATES CIRCADIAN EXPRESSION | Genes involved in BMAL1:CLOCK/NPAS2 Activates Circadian Expression |
| 0.1 | 0.6 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.2 | 0.5 | REACTOME MRNA DECAY BY 5 TO 3 EXORIBONUCLEASE | Genes involved in mRNA Decay by 5' to 3' Exoribonuclease |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.4 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.0 | 0.4 | REACTOME RNA POL II TRANSCRIPTION PRE INITIATION AND PROMOTER OPENING | Genes involved in RNA Polymerase II Transcription Pre-Initiation And Promoter Opening |
| 0.0 | 0.4 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.3 | REACTOME SEMAPHORIN INTERACTIONS | Genes involved in Semaphorin interactions |
| 0.1 | 0.3 | REACTOME GASTRIN CREB SIGNALLING PATHWAY VIA PKC AND MAPK | Genes involved in Gastrin-CREB signalling pathway via PKC and MAPK |
| 0.1 | 0.3 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |