Project
GSE130291:vernalization in Arabidopsis thaliana
Navigation
Downloads
Results for AT3G02940
Z-value: 1.15
Transcription factors associated with AT3G02940
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G02940
|
AT3G02940 | myb domain protein 107 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| MYB107 | arTal_v1_Chr3_+_661849_661849 | 0.76 | 1.5e-03 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr3_+_4104463_4104463 Show fit | 2.15 |
AT3G12900.1
|
2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
|
| arTal_v1_Chr5_-_14753088_14753088 Show fit | 1.96 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 1.88 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 1.71 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr1_+_5872024_5872024 Show fit | 1.67 |
AT1G17180.1
|
glutathione S-transferase TAU 25 |
|
| arTal_v1_Chr4_+_8646150_8646150 Show fit | 1.48 |
AT4G15160.2
AT4G15160.1 |
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
|
| arTal_v1_Chr4_-_15954803_15954803 Show fit | 1.42 |
AT4G33070.1
|
Thiamine pyrophosphate dependent pyruvate decarboxylase family protein |
|
| arTal_v1_Chr4_-_13016235_13016235 Show fit | 1.36 |
AT4G25470.1
|
C-repeat/DRE binding factor 2 |
|
| arTal_v1_Chr3_-_21085245_21085245 Show fit | 1.31 |
AT3G56970.1
|
basic helix-loop-helix (bHLH) DNA-binding superfamily protein |
|
| arTal_v1_Chr3_+_2465235_2465235 Show fit | 1.27 |
AT3G07720.1
|
Galactose oxidase/kelch repeat superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G02940
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 5.7 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.1 | 5.0 | GO:0010043 | response to zinc ion(GO:0010043) |
| 0.2 | 4.9 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.0 | 2.8 | GO:0009845 | seed germination(GO:0009845) |
| 0.0 | 2.5 | GO:0048767 | root hair elongation(GO:0048767) |
| 0.0 | 2.2 | GO:0010498 | proteasomal protein catabolic process(GO:0010498) proteasome-mediated ubiquitin-dependent protein catabolic process(GO:0043161) |
| 0.0 | 2.1 | GO:1902600 | hydrogen ion transmembrane transport(GO:1902600) |
| 0.1 | 1.9 | GO:0006094 | gluconeogenesis(GO:0006094) |
| 0.0 | 1.9 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.3 | 1.8 | GO:0010106 | cellular response to iron ion starvation(GO:0010106) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 14.0 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.0 | 11.5 | GO:0005618 | cell wall(GO:0005618) external encapsulating structure(GO:0030312) |
| 0.0 | 5.5 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 3.8 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 3.2 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 3.2 | GO:0005802 | trans-Golgi network(GO:0005802) |
| 0.0 | 2.7 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.0 | 2.1 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.0 | 1.9 | GO:0005797 | Golgi medial cisterna(GO:0005797) |
| 0.0 | 1.7 | GO:0005747 | mitochondrial respiratory chain complex I(GO:0005747) NADH dehydrogenase complex(GO:0030964) respiratory chain complex I(GO:0045271) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 3.6 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.4 | 3.5 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.0 | 3.4 | GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
| 0.0 | 3.2 | GO:0016709 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, NAD(P)H as one donor, and incorporation of one atom of oxygen(GO:0016709) |
| 0.1 | 2.9 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.1 | 2.8 | GO:0015086 | cadmium ion transmembrane transporter activity(GO:0015086) |
| 0.0 | 2.8 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.1 | 2.7 | GO:0015562 | efflux transmembrane transporter activity(GO:0015562) |
| 0.2 | 2.4 | GO:0004312 | fatty acid synthase activity(GO:0004312) |
| 0.0 | 2.4 | GO:0009055 | electron carrier activity(GO:0009055) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.7 | PID ATR PATHWAY | ATR signaling pathway |
| 0.1 | 0.6 | PID NOTCH PATHWAY | Notch signaling pathway |
| 0.1 | 0.5 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.5 | PID MET PATHWAY | Signaling events mediated by Hepatocyte Growth Factor Receptor (c-Met) |
| 0.1 | 0.4 | ST ADRENERGIC | Adrenergic Pathway |
| 0.1 | 0.4 | SIG CHEMOTAXIS | Genes related to chemotaxis |
| 0.1 | 0.4 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
| 0.1 | 0.4 | ST FAS SIGNALING PATHWAY | Fas Signaling Pathway |
| 0.1 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.8 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |
| 0.0 | 0.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.1 | 0.6 | REACTOME POL SWITCHING | Genes involved in Polymerase switching |
| 0.2 | 0.5 | REACTOME GAB1 SIGNALOSOME | Genes involved in GAB1 signalosome |
| 0.2 | 0.5 | REACTOME ABACAVIR TRANSPORT AND METABOLISM | Genes involved in Abacavir transport and metabolism |
| 0.2 | 0.5 | REACTOME TRANSPORT OF MATURE MRNA DERIVED FROM AN INTRONLESS TRANSCRIPT | Genes involved in Transport of Mature mRNA Derived from an Intronless Transcript |
| 0.1 | 0.4 | REACTOME HDL MEDIATED LIPID TRANSPORT | Genes involved in HDL-mediated lipid transport |
| 0.1 | 0.4 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.1 | 0.4 | REACTOME ANTIVIRAL MECHANISM BY IFN STIMULATED GENES | Genes involved in Antiviral mechanism by IFN-stimulated genes |
| 0.1 | 0.4 | REACTOME CELL DEATH SIGNALLING VIA NRAGE NRIF AND NADE | Genes involved in Cell death signalling via NRAGE, NRIF and NADE |