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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT3G01970
Z-value: 1.31
Transcription factors associated with AT3G01970
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT3G01970
|
AT3G01970 | WRKY DNA-binding protein 45 |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| WRKY45 | arTal_v1_Chr3_-_327412_327412 | 0.22 | 4.5e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr1_-_8075037_8075037 Show fit | 2.37 |
AT1G22810.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr1_-_7396773_7396823 Show fit | 2.34 |
AT1G21120.1
AT1G21120.2 |
O-methyltransferase family protein |
|
| arTal_v1_Chr4_+_6826587_6826587 Show fit | 2.25 |
AT4G11190.1
|
Disease resistance-responsive (dirigent-like protein) family protein |
|
| arTal_v1_Chr4_-_14827211_14827211 Show fit | 2.22 |
AT4G30280.1
|
xyloglucan endotransglucosylase/hydrolase 18 |
|
| arTal_v1_Chr1_-_4975705_4975705 Show fit | 2.19 |
AT1G14540.1
|
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_+_19434758_19434758 Show fit | 2.16 |
AT5G47990.1
|
cytochrome P450, family 705, subfamily A, polypeptide 5 |
|
| arTal_v1_Chr1_-_7391603_7391603 Show fit | 2.05 |
AT1G21110.1
|
O-methyltransferase family protein |
|
| arTal_v1_Chr5_+_19428888_19428888 Show fit | 1.92 |
AT5G47980.1
|
HXXXD-type acyl-transferase family protein |
|
| arTal_v1_Chr1_-_27569823_27569823 Show fit | 1.91 |
AT1G73330.1
|
drought-repressed 4 |
|
| arTal_v1_Chr1_-_7388512_7388512 Show fit | 1.89 |
AT1G21100.1
|
O-methyltransferase family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT3G01970
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 28.4 | GO:0010200 | response to chitin(GO:0010200) |
| 0.1 | 15.6 | GO:0071456 | cellular response to hypoxia(GO:0071456) |
| 0.5 | 6.4 | GO:2000122 | negative regulation of stomatal complex development(GO:2000122) |
| 0.3 | 6.4 | GO:0042343 | indole glucosinolate metabolic process(GO:0042343) |
| 0.1 | 4.8 | GO:0048544 | recognition of pollen(GO:0048544) |
| 0.9 | 3.8 | GO:0080003 | thalianol metabolic process(GO:0080003) |
| 0.2 | 3.8 | GO:0006863 | purine nucleobase transport(GO:0006863) |
| 0.1 | 3.4 | GO:2000022 | regulation of jasmonic acid mediated signaling pathway(GO:2000022) |
| 0.1 | 3.2 | GO:0030091 | protein repair(GO:0030091) |
| 0.0 | 3.2 | GO:0045490 | pectin catabolic process(GO:0045490) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 49.0 | GO:0005576 | extracellular region(GO:0005576) |
| 0.0 | 11.1 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.1 | 6.0 | GO:0010319 | stromule(GO:0010319) |
| 0.0 | 2.8 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
| 0.1 | 1.6 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
| 0.0 | 1.5 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.1 | 1.4 | GO:0010005 | cortical microtubule, transverse to long axis(GO:0010005) |
| 0.0 | 1.3 | GO:0031228 | integral component of Golgi membrane(GO:0030173) intrinsic component of Golgi membrane(GO:0031228) |
| 0.0 | 1.3 | GO:0031201 | SNARE complex(GO:0031201) |
| 0.0 | 1.3 | GO:0009505 | plant-type cell wall(GO:0009505) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 8.6 | GO:0008171 | O-methyltransferase activity(GO:0008171) |
| 0.2 | 7.5 | GO:0004089 | carbonate dehydratase activity(GO:0004089) |
| 0.0 | 6.8 | GO:0004674 | protein serine/threonine kinase activity(GO:0004674) |
| 0.0 | 6.1 | GO:0005516 | calmodulin binding(GO:0005516) |
| 0.1 | 5.5 | GO:0004601 | peroxidase activity(GO:0004601) |
| 0.5 | 5.3 | GO:0033743 | peptide-methionine (R)-S-oxide reductase activity(GO:0033743) |
| 0.2 | 4.7 | GO:0005345 | purine nucleobase transmembrane transporter activity(GO:0005345) |
| 0.1 | 3.8 | GO:0046910 | pectinesterase inhibitor activity(GO:0046910) |
| 0.1 | 3.3 | GO:0016706 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors(GO:0016706) |
| 0.1 | 3.1 | GO:0102338 | 3-oxo-arachidoyl-CoA synthase activity(GO:0102336) 3-oxo-cerotoyl-CoA synthase activity(GO:0102337) 3-oxo-lignoceronyl-CoA synthase activity(GO:0102338) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.8 | 6.4 | PID CMYB PATHWAY | C-MYB transcription factor network |
| 0.4 | 1.5 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
| 0.2 | 1.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.2 | 0.6 | PID MYC REPRESS PATHWAY | Validated targets of C-MYC transcriptional repression |
| 0.1 | 0.5 | PID HES HEY PATHWAY | Notch-mediated HES/HEY network |
| 0.1 | 0.3 | PID PI3KCI PATHWAY | Class I PI3K signaling events |
| 0.0 | 0.3 | SIG BCR SIGNALING PATHWAY | Members of the BCR signaling pathway |
| 0.0 | 0.2 | PID P73PATHWAY | p73 transcription factor network |
| 0.0 | 0.1 | PID IL12 2PATHWAY | IL12-mediated signaling events |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 1.1 | 6.4 | REACTOME REVERSIBLE HYDRATION OF CARBON DIOXIDE | Genes involved in Reversible Hydration of Carbon Dioxide |
| 0.4 | 1.5 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
| 0.2 | 1.4 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.2 | 0.7 | REACTOME MITOTIC PROMETAPHASE | Genes involved in Mitotic Prometaphase |
| 0.1 | 0.5 | REACTOME PEROXISOMAL LIPID METABOLISM | Genes involved in Peroxisomal lipid metabolism |
| 0.1 | 0.5 | REACTOME ANTIGEN PROCESSING UBIQUITINATION PROTEASOME DEGRADATION | Genes involved in Antigen processing: Ubiquitination & Proteasome degradation |
| 0.1 | 0.4 | REACTOME SIGNALING BY TGF BETA RECEPTOR COMPLEX | Genes involved in Signaling by TGF-beta Receptor Complex |
| 0.1 | 0.4 | REACTOME G0 AND EARLY G1 | Genes involved in G0 and Early G1 |
| 0.1 | 0.3 | REACTOME GLUTATHIONE CONJUGATION | Genes involved in Glutathione conjugation |
| 0.1 | 0.2 | REACTOME SYNTHESIS OF PIPS AT THE GOLGI MEMBRANE | Genes involved in Synthesis of PIPs at the Golgi membrane |