GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT3G01530
|
AT3G01530 | myb domain protein 57 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
MYB57 | arTal_v1_Chr3_-_211804_211804 | -0.43 | 1.3e-01 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr2_-_17712290_17712330 Show fit | 2.51 |
AT2G42540.2
AT2G42540.4 AT2G42540.1 AT2G42540.3 |
cold-regulated 15a |
|
arTal_v1_Chr1_+_28975255_28975255 Show fit | 2.22 |
AT1G77120.1
|
alcohol dehydrogenase 1 |
|
arTal_v1_Chr4_+_15451988_15451988 Show fit | 1.87 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
arTal_v1_Chr2_-_17710433_17710433 Show fit | 1.82 |
AT2G42530.1
|
cold regulated 15b |
|
arTal_v1_Chr4_+_10707344_10707378 Show fit | 1.78 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
arTal_v1_Chr4_-_7401951_7401951 Show fit | 1.73 |
AT4G12470.1
|
azelaic acid induced 1 |
|
arTal_v1_Chr5_-_14753088_14753088 Show fit | 1.68 |
AT5G37260.1
|
Homeodomain-like superfamily protein |
|
arTal_v1_Chr1_+_209208_209208 Show fit | 1.63 |
AT1G01580.1
|
ferric reduction oxidase 2 |
|
arTal_v1_Chr1_+_208995_208995 Show fit | 1.62 |
AT1G01580.2
|
ferric reduction oxidase 2 |
|
arTal_v1_Chr4_-_7406994_7406994 Show fit | 1.55 |
AT4G12480.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 9.3 | GO:0006412 | translation(GO:0006412) |
0.0 | 8.4 | GO:0006468 | protein phosphorylation(GO:0006468) |
0.2 | 6.9 | GO:0055072 | iron ion homeostasis(GO:0055072) |
0.8 | 5.0 | GO:0009413 | response to flooding(GO:0009413) |
0.0 | 4.9 | GO:0006457 | protein folding(GO:0006457) |
0.1 | 4.6 | GO:0002181 | cytoplasmic translation(GO:0002181) |
0.0 | 4.4 | GO:0048511 | circadian rhythm(GO:0007623) rhythmic process(GO:0048511) |
1.0 | 4.0 | GO:0015675 | nickel cation transport(GO:0015675) |
0.0 | 4.0 | GO:0009658 | chloroplast organization(GO:0009658) |
0.1 | 3.6 | GO:0009789 | positive regulation of abscisic acid-activated signaling pathway(GO:0009789) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 12.0 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
0.0 | 6.7 | GO:0005730 | nucleolus(GO:0005730) |
0.1 | 6.4 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
0.1 | 6.1 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
0.1 | 6.0 | GO:0009707 | chloroplast outer membrane(GO:0009707) |
0.0 | 3.9 | GO:0016021 | integral component of membrane(GO:0016021) |
0.0 | 3.4 | GO:0022626 | cytosolic ribosome(GO:0022626) |
0.0 | 3.3 | GO:0005789 | endoplasmic reticulum membrane(GO:0005789) |
0.0 | 3.0 | GO:0080008 | Cul4-RING E3 ubiquitin ligase complex(GO:0080008) |
0.0 | 3.0 | GO:0005802 | trans-Golgi network(GO:0005802) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 14.0 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
0.1 | 7.2 | GO:0051082 | unfolded protein binding(GO:0051082) |
0.0 | 7.2 | GO:0042802 | identical protein binding(GO:0042802) |
0.0 | 7.1 | GO:0004672 | protein kinase activity(GO:0004672) |
0.1 | 4.5 | GO:0048029 | monosaccharide binding(GO:0048029) |
0.0 | 4.4 | GO:0043531 | ADP binding(GO:0043531) |
0.2 | 4.1 | GO:0016157 | sucrose synthase activity(GO:0016157) |
0.0 | 3.7 | GO:0016820 | hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances(GO:0016820) ATPase activity, coupled to transmembrane movement of substances(GO:0042626) ATPase activity, coupled to movement of substances(GO:0043492) |
0.1 | 3.6 | GO:0043621 | protein self-association(GO:0043621) |
0.0 | 3.6 | GO:0003724 | RNA helicase activity(GO:0003724) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.4 | 1.1 | PID NECTIN PATHWAY | Nectin adhesion pathway |
0.3 | 1.0 | SIG PIP3 SIGNALING IN CARDIAC MYOCTES | Genes related to PIP3 signaling in cardiac myocytes |
0.1 | 1.0 | PID HIF1 TFPATHWAY | HIF-1-alpha transcription factor network |
0.2 | 0.6 | SIG CHEMOTAXIS | Genes related to chemotaxis |
0.1 | 0.6 | PID IL4 2PATHWAY | IL4-mediated signaling events |
0.1 | 0.4 | PID HNF3B PATHWAY | FOXA2 and FOXA3 transcription factor networks |
0.1 | 0.4 | PID NOTCH PATHWAY | Notch signaling pathway |
0.0 | 0.4 | PID P53 DOWNSTREAM PATHWAY | Direct p53 effectors |
0.1 | 0.3 | PID TCPTP PATHWAY | Signaling events mediated by TCPTP |
0.1 | 0.3 | PID MTOR 4PATHWAY | mTOR signaling pathway |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.5 | 2.0 | REACTOME RECRUITMENT OF MITOTIC CENTROSOME PROTEINS AND COMPLEXES | Genes involved in Recruitment of mitotic centrosome proteins and complexes |
0.5 | 1.6 | REACTOME GABA SYNTHESIS RELEASE REUPTAKE AND DEGRADATION | Genes involved in GABA synthesis, release, reuptake and degradation |
0.3 | 1.3 | REACTOME SLC MEDIATED TRANSMEMBRANE TRANSPORT | Genes involved in SLC-mediated transmembrane transport |
0.1 | 1.3 | REACTOME SIGNALING BY RHO GTPASES | Genes involved in Signaling by Rho GTPases |
0.4 | 1.1 | REACTOME P130CAS LINKAGE TO MAPK SIGNALING FOR INTEGRINS | Genes involved in p130Cas linkage to MAPK signaling for integrins |
0.3 | 1.1 | REACTOME SYNTHESIS OF BILE ACIDS AND BILE SALTS VIA 7ALPHA HYDROXYCHOLESTEROL | Genes involved in Synthesis of bile acids and bile salts via 7alpha-hydroxycholesterol |
0.1 | 1.0 | REACTOME UNWINDING OF DNA | Genes involved in Unwinding of DNA |
0.2 | 0.7 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
0.2 | 0.7 | REACTOME FANCONI ANEMIA PATHWAY | Genes involved in Fanconi Anemia pathway |
0.1 | 0.7 | REACTOME E2F ENABLED INHIBITION OF PRE REPLICATION COMPLEX FORMATION | Genes involved in E2F-enabled inhibition of pre-replication complex formation |