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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G47270
Z-value: 0.79
Transcription factors associated with AT2G47270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G47270
|
AT2G47270 | transcription factor UPBEAT protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| UPB1 | arTal_v1_Chr2_-_19412328_19412328 | 0.58 | 2.8e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr2_+_19245591_19245684 Show fit | 1.72 |
AT2G46830.1
AT2G46830.2 |
circadian clock associated 1 |
|
| arTal_v1_Chr1_-_7086873_7086873 Show fit | 1.57 |
AT1G20440.1
|
cold-regulated 47 |
|
| arTal_v1_Chr2_+_19246681_19246681 Show fit | 1.54 |
AT2G46830.3
|
circadian clock associated 1 |
|
| arTal_v1_Chr5_-_8358546_8358546 Show fit | 1.43 |
AT5G24470.1
|
two-component response regulator-like protein |
|
| arTal_v1_Chr3_-_17475274_17475274 Show fit | 1.31 |
AT3G47420.3
AT3G47420.1 AT3G47420.2 |
putative glycerol-3-phosphate transporter 1 |
|
| arTal_v1_Chr5_+_6802282_6802282 Show fit | 0.87 |
AT5G20150.1
|
SPX domain-containing protein 1 |
|
| arTal_v1_Chr1_-_20385380_20385380 Show fit | 0.79 |
AT1G54570.1
|
Esterase/lipase/thioesterase family protein |
|
| arTal_v1_Chr5_-_5890218_5890260 Show fit | 0.64 |
AT5G17820.1
AT5G17820.2 |
Peroxidase superfamily protein |
|
| arTal_v1_Chr5_-_17994584_17994722 Show fit | 0.64 |
AT5G44610.3
AT5G44610.2 AT5G44610.1 |
microtubule-associated protein 18 |
|
| arTal_v1_Chr2_-_14310608_14310608 Show fit | 0.63 |
AT2G33830.2
|
Dormancy/auxin associated family protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G47270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.3 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.0 | 2.1 | GO:0010218 | response to far red light(GO:0010218) |
| 0.0 | 1.6 | GO:0010286 | heat acclimation(GO:0010286) |
| 0.1 | 1.3 | GO:0055062 | phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506) |
| 0.3 | 0.9 | GO:0080040 | positive regulation of cellular response to phosphate starvation(GO:0080040) |
| 0.2 | 0.8 | GO:0033306 | phytol metabolic process(GO:0033306) |
| 0.2 | 0.6 | GO:0031115 | negative regulation of microtubule polymerization(GO:0031115) |
| 0.1 | 0.6 | GO:0015824 | proline transport(GO:0015824) |
| 0.1 | 0.6 | GO:0009957 | epidermal cell fate specification(GO:0009957) |
| 0.0 | 0.6 | GO:0005978 | glycogen biosynthetic process(GO:0005978) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 0.8 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 0.5 | GO:0044452 | nucleolar part(GO:0044452) |
| 0.0 | 0.3 | GO:0031231 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
| 0.0 | 0.3 | GO:0000419 | DNA-directed RNA polymerase V complex(GO:0000419) |
| 0.0 | 0.1 | GO:0005776 | autophagosome(GO:0005776) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.3 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.0 | 2.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 1.4 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.1 | 0.8 | GO:0004144 | diacylglycerol O-acyltransferase activity(GO:0004144) |
| 0.2 | 0.6 | GO:0003844 | 1,4-alpha-glucan branching enzyme activity(GO:0003844) |
| 0.1 | 0.6 | GO:0015193 | L-proline transmembrane transporter activity(GO:0015193) |
| 0.0 | 0.6 | GO:0030674 | protein binding, bridging(GO:0030674) |
| 0.0 | 0.6 | GO:1901981 | phosphatidylinositol phosphate binding(GO:1901981) |
| 0.1 | 0.5 | GO:0001046 | core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047) |
| 0.0 | 0.5 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |