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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G47270
Z-value: 0.79
Transcription factors associated with AT2G47270
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G47270
|
AT2G47270 | transcription factor UPBEAT protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| UPB1 | arTal_v1_Chr2_-_19412328_19412328 | 0.58 | 2.8e-02 | Click! |
Activity profile of AT2G47270 motif
Sorted Z-values of AT2G47270 motif
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| Chr2_+_19245591 | 1.72 |
AT2G46830.1
AT2G46830.2 |
CCA1
|
circadian clock associated 1 |
| Chr1_-_7086873 | 1.57 |
AT1G20440.1
|
COR47
|
cold-regulated 47 |
| Chr2_+_19246681 | 1.54 |
AT2G46830.3
|
CCA1
|
circadian clock associated 1 |
| Chr5_-_8358546 | 1.43 |
AT5G24470.1
|
PRR5
|
two-component response regulator-like protein |
| Chr3_-_17475274 | 1.31 |
AT3G47420.3
AT3G47420.1 AT3G47420.2 |
G3Pp1
|
putative glycerol-3-phosphate transporter 1 |
| Chr5_+_6802282 | 0.87 |
AT5G20150.1
|
SPX1
|
SPX domain-containing protein 1 |
| Chr1_-_20385380 | 0.79 |
AT1G54570.1
|
PES1
|
Esterase/lipase/thioesterase family protein |
| Chr5_-_5890218 | 0.64 |
AT5G17820.1
AT5G17820.2 |
AT5G17820
|
Peroxidase superfamily protein |
| Chr5_-_17994584 | 0.64 |
AT5G44610.3
AT5G44610.2 AT5G44610.1 |
MAP18
|
microtubule-associated protein 18 |
| Chr2_-_14310608 | 0.63 |
AT2G33830.2
|
AT2G33830
|
Dormancy/auxin associated family protein |
| Chr2_-_856725 | 0.63 |
AT2G02950.1
|
PKS1
|
phytochrome kinase substrate 1 |
| Chr2_-_14310339 | 0.62 |
AT2G33830.1
|
AT2G33830
|
Dormancy/auxin associated family protein |
| Chr4_-_14393381 | 0.58 |
AT4G29190.1
|
OZF2
|
Zinc finger C-x8-C-x5-C-x3-H type family protein |
| Chr3_-_7130436 | 0.58 |
AT3G20440.1
AT3G20440.2 AT3G20440.3 |
EMB2729
|
Alpha amylase family protein |
| Chr3_-_7709933 | 0.55 |
AT3G21890.1
|
BBX31
|
B-box type zinc finger family protein |
| Chr2_+_859441 | 0.54 |
AT2G02955.1
|
MEE12
|
maternal effect embryo arrest 12 |
| Chr1_-_6812757 | 0.52 |
AT1G19700.3
AT1G19700.1 |
BEL10
|
BEL1-like homeodomain 10 |
| Chr3_-_2830649 | 0.50 |
AT3G09220.2
AT3G09220.1 |
LAC7
|
laccase 7 |
| Chr1_+_10236337 | 0.49 |
AT1G29280.1
|
WRKY65
|
WRKY DNA-binding protein 65 |
| Chr5_+_2167468 | 0.49 |
AT5G06980.4
AT5G06980.3 AT5G06980.5 AT5G06980.2 |
AT5G06980
|
hypothetical protein |
| Chr1_-_6811994 | 0.47 |
AT1G19700.2
|
BEL10
|
BEL1-like homeodomain 10 |
| Chr2_-_15725022 | 0.47 |
AT2G37450.2
AT2G37450.3 AT2G37450.1 |
UMAMIT13
|
nodulin MtN21 /EamA-like transporter family protein |
| Chr5_-_6800903 | 0.46 |
AT5G20140.1
AT5G20140.2 |
HBP5
|
SOUL heme-binding family protein |
| Chr1_+_19958380 | 0.45 |
AT1G53470.1
|
MSL4
|
mechanosensitive channel of small conductance-like 4 |
| Chr4_+_9205080 | 0.45 |
AT4G16270.1
|
AT4G16270
|
peroxidase superfamily protein |
| Chr1_-_1433010 | 0.45 |
AT1G05010.1
|
EFE
|
ethylene-forming enzyme |
| Chr3_-_1063103 | 0.44 |
AT3G04070.2
AT3G04070.1 |
NAC047
|
NAC domain containing protein 47 |
| Chr5_+_2167120 | 0.42 |
AT5G06980.1
|
AT5G06980
|
hypothetical protein |
| Chr3_+_21123859 | 0.42 |
AT3G57070.1
|
AT3G57070
|
Glutaredoxin family protein |
| Chr1_-_6812523 | 0.40 |
AT1G19700.4
|
BEL10
|
BEL1-like homeodomain 10 |
| Chr3_+_673428 | 0.38 |
AT3G02990.1
|
HSFA1E
|
heat shock transcription factor A1E |
| Chr2_-_10429487 | 0.38 |
AT2G24550.1
|
AT2G24550
|
major centromere autoantigen B-like protein |
| Chr2_+_15645407 | 0.37 |
AT2G37260.2
AT2G37260.3 |
TTG2
|
WRKY family transcription factor family protein |
| Chr1_-_6813063 | 0.35 |
AT1G19700.5
|
BEL10
|
BEL1-like homeodomain 10 |
| Chr5_-_19171263 | 0.35 |
AT5G47210.1
AT5G47210.2 AT5G47210.3 |
AT5G47210
|
Hyaluronan / mRNA binding family |
| Chr5_+_22817480 | 0.34 |
AT5G56340.1
|
ATCRT1
|
RING/U-box superfamily protein |
| Chr1_-_4766852 | 0.33 |
AT1G13940.1
AT1G13940.2 |
AT1G13940
|
T-box transcription factor, putative (DUF863) |
| Chr2_-_14308367 | 0.32 |
AT2G33820.3
AT2G33820.2 AT2G33820.1 AT2G33820.4 |
MBAC1
|
Mitochondrial substrate carrier family protein |
| Chr2_-_15641773 | 0.31 |
AT2G37240.1
|
AT2G37240
|
Thioredoxin superfamily protein |
| Chr1_+_6814704 | 0.30 |
AT1G19710.1
|
AT1G19710
|
UDP-Glycosyltransferase superfamily protein |
| Chr4_+_438991 | 0.30 |
AT4G01020.1
|
AT4G01020
|
helicase domain-containing protein / IBR domain-containing protein / zinc finger protein-like protein |
| Chr1_-_19954267 | 0.30 |
AT1G53450.1
AT1G53450.3 AT1G53450.2 |
AT1G53450
|
epstein-barr nuclear antigen |
| Chr1_-_19956915 | 0.29 |
AT1G53460.1
|
AT1G53460
|
craniofacial development protein |
| Chr2_+_7558916 | 0.29 |
AT2G17410.1
AT2G17410.2 |
AT2G17410
|
ARID/BRIGHT DNA-binding domain-containing protein |
| Chr3_+_20695433 | 0.28 |
AT3G55740.1
AT3G55740.2 |
PROT2
|
proline transporter 2 |
| Chr2_+_487398 | 0.28 |
AT2G02040.1
|
PTR2
|
peptide transporter 2 |
| Chr3_+_20695930 | 0.28 |
AT3G55740.3
|
PROT2
|
proline transporter 2 |
| Chr1_+_5615808 | 0.28 |
AT1G16440.1
|
RSH3
|
root hair specific 3 |
| Chr3_-_7131327 | 0.27 |
AT3G20450.1
|
AT3G20450
|
B-cell receptor-associated protein 31-like protein |
| Chr1_-_8727212 | 0.27 |
AT1G24625.1
|
ZFP7
|
zinc finger protein 7 |
| Chr3_+_20698431 | 0.27 |
AT3G55750.1
|
AT3G55750
|
Ribosomal protein L35Ae family protein |
| Chr5_-_9247540 | 0.26 |
AT5G26340.1
|
MSS1
|
Major facilitator superfamily protein |
| Chr3_+_7134885 | 0.26 |
AT3G20460.1
|
AT3G20460
|
Major facilitator superfamily protein |
| Chr2_-_799442 | 0.26 |
AT2G02800.2
AT2G02800.1 |
APK2B
|
protein kinase 2B |
| Chr3_+_17480521 | 0.25 |
AT3G47430.1
|
PEX11B
|
peroxin 11B |
| Chr1_+_9996713 | 0.25 |
AT1G28440.1
|
HSL1
|
HAESA-like 1 |
| Chr2_-_18620451 | 0.25 |
AT2G45160.1
|
HAM1
|
GRAS family transcription factor |
| Chr5_-_19172956 | 0.25 |
AT5G47220.1
|
ERF2
|
ethylene responsive element binding factor 2 |
| Chr2_+_15644811 | 0.23 |
AT2G37260.1
|
TTG2
|
WRKY family transcription factor family protein |
| Chr1_+_20387058 | 0.22 |
AT1G54575.1
|
AT1G54575
|
hypothetical protein |
| Chr2_+_8080354 | 0.22 |
AT2G18630.2
AT2G18630.1 |
AT2G18630
|
transmembrane protein, putative (DUF677) |
| Chr5_+_16675582 | 0.22 |
AT5G41700.5
AT5G41700.1 AT5G41700.3 AT5G41700.4 AT5G41700.2 |
UBC8
|
ubiquitin conjugating enzyme 8 |
| Chr1_-_8532262 | 0.21 |
AT1G24120.1
|
ARL1
|
ARG1-like 1 |
| Chr1_+_20386809 | 0.21 |
AT1G54575.2
|
AT1G54575
|
hypothetical protein |
| Chr3_+_2833346 | 0.20 |
AT3G09230.1
|
MYB1
|
myb domain protein 1 |
| Chr3_+_19168672 | 0.20 |
AT3G51670.1
|
AT3G51670
|
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein |
| Chr2_-_18801383 | 0.19 |
AT2G45640.1
AT2G45640.2 |
SAP18
|
SIN3 associated polypeptide P18 |
| Chr3_-_4214530 | 0.16 |
AT3G13100.1
AT3G13100.2 |
ABCC7
|
multidrug resistance-associated protein 7 |
| Chr4_+_2718170 | 0.16 |
AT4G05320.1
AT4G05320.5 AT4G05320.7 AT4G05320.8 AT4G05320.3 AT4G05320.4 |
UBQ10
|
polyubiquitin 10 |
| Chr4_+_2717977 | 0.16 |
AT4G05320.2
AT4G05320.6 |
UBQ10
|
polyubiquitin 10 |
| Chr1_+_21316730 | 0.16 |
AT1G57560.2
AT1G57560.1 |
MYB50
|
myb domain protein 50 |
| Chr4_-_5797375 | 0.16 |
AT4G09040.2
AT4G09040.1 |
AT4G09040
|
RNA-binding (RRM/RBD/RNP motifs) family protein |
| Chr2_+_7559215 | 0.16 |
AT2G17410.3
|
AT2G17410
|
ARID/BRIGHT DNA-binding domain-containing protein |
| Chr2_+_8293640 | 0.15 |
AT2G19130.1
|
AT2G19130
|
S-locus lectin protein kinase family protein |
| Chr5_-_2946839 | 0.15 |
AT5G09460.1
|
AT5G09460
|
transcription factor bHLH143 |
| Chr2_+_18624264 | 0.14 |
AT2G45170.1
AT2G45170.2 |
ATG8E
|
AUTOPHAGY 8E |
| Chr4_-_9203815 | 0.14 |
AT4G16265.2
|
NRPB9B
|
RNA polymerases M/15 Kd subunit |
| Chr4_-_9201643 | 0.13 |
AT4G16260.2
AT4G16260.1 |
AT4G16260
|
Glycosyl hydrolase superfamily protein |
| Chr5_+_19366133 | 0.12 |
AT5G47820.1
AT5G47820.2 |
FRA1
|
P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Chr2_+_10431260 | 0.11 |
AT2G24560.1
|
AT2G24560
|
GDSL-like Lipase/Acylhydrolase family protein |
| Chr5_-_16085213 | 0.11 |
AT5G40240.3
AT5G40240.1 |
UMAMIT40
|
nodulin MtN21 /EamA-like transporter family protein |
| Chr5_-_1114681 | 0.10 |
AT5G04110.4
AT5G04110.3 |
GYRB3
|
DNA GYRASE B3 |
| Chr3_+_21125725 | 0.10 |
AT3G57080.1
|
NRPE5
|
Eukaryotic rpb5 RNA polymerase subunit family protein |
| Chr1_+_20389347 | 0.10 |
AT1G54580.1
|
ACP2
|
acyl carrier protein 2 |
| Chr1_+_26423874 | 0.09 |
AT1G70170.1
|
MMP
|
matrix metalloproteinase |
| Chr1_+_26419894 | 0.08 |
AT1G70160.1
|
AT1G70160
|
zinc finger MYND domain protein |
| Chr5_+_3144200 | 0.08 |
AT5G10050.1
|
AT5G10050
|
NAD(P)-binding Rossmann-fold superfamily protein |
| Chr5_-_1115007 | 0.07 |
AT5G04110.2
AT5G04110.1 |
GYRB3
|
DNA GYRASE B3 |
| Chr5_-_16084957 | 0.06 |
AT5G40240.2
|
UMAMIT40
|
nodulin MtN21 /EamA-like transporter family protein |
| Chr4_-_9204147 | 0.06 |
AT4G16265.1
|
NRPB9B
|
RNA polymerases M/15 Kd subunit |
| Chr1_+_5614593 | 0.06 |
AT1G16430.1
|
AT1G16430
|
Surfeit locus protein 5 subunit 22 of Mediator complex |
| Chr5_+_16677827 | 0.06 |
AT5G41710.1
|
AT5G41710
|
|
| Chr3_-_21121051 | 0.06 |
AT3G57060.1
AT3G57060.2 AT3G57060.3 |
AT3G57060
|
binding protein |
| Chr2_+_10431412 | 0.06 |
AT2G24560.2
|
AT2G24560
|
GDSL-like Lipase/Acylhydrolase family protein |
| Chr2_+_19336653 | 0.05 |
AT2G47070.1
AT2G47070.2 |
SPL1
|
squamosa promoter binding protein-like 1 |
| Chr2_-_10285012 | 0.04 |
AT2G24190.2
AT2G24190.1 |
SDR2
|
NAD(P)-binding Rossmann-fold superfamily protein |
| Chr3_+_4180355 | 0.02 |
AT3G13060.2
AT3G13060.5 AT3G13060.1 AT3G13060.6 |
ECT5
|
evolutionarily conserved C-terminal region 5 |
| Chr2_+_8527175 | 0.02 |
AT2G19790.1
|
AT2G19790
|
SNARE-like superfamily protein |
| Chr5_-_3139624 | 0.02 |
AT5G10030.5
|
TGA4
|
TGACG motif-binding factor 4 |
| Chr5_-_3140347 | 0.02 |
AT5G10030.4
AT5G10030.3 |
TGA4
|
TGACG motif-binding factor 4 |
| Chr3_-_4216302 | 0.01 |
AT3G13110.1
|
SERAT2%3B2
|
serine acetyltransferase 2;2 |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G47270
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.3 | GO:0042754 | negative regulation of circadian rhythm(GO:0042754) |
| 0.3 | 0.9 | GO:0080040 | positive regulation of cellular response to phosphate starvation(GO:0080040) |
| 0.2 | 0.6 | GO:0031115 | negative regulation of microtubule polymerization(GO:0031115) |
| 0.2 | 0.8 | GO:0033306 | phytol metabolic process(GO:0033306) |
| 0.1 | 0.4 | GO:0033240 | positive regulation of cellular amine metabolic process(GO:0033240) positive regulation of cellular amino acid metabolic process(GO:0045764) |
| 0.1 | 0.5 | GO:0006361 | transcription initiation from RNA polymerase I promoter(GO:0006361) |
| 0.1 | 0.6 | GO:0015824 | proline transport(GO:0015824) |
| 0.1 | 1.3 | GO:0055062 | phosphate ion homeostasis(GO:0055062) trivalent inorganic anion homeostasis(GO:0072506) |
| 0.1 | 0.3 | GO:1902475 | L-alpha-amino acid transmembrane transport(GO:1902475) |
| 0.1 | 0.4 | GO:0070542 | response to fatty acid(GO:0070542) cellular response to fatty acid(GO:0071398) |
| 0.1 | 0.2 | GO:0001193 | maintenance of transcriptional fidelity during DNA-templated transcription elongation(GO:0001192) maintenance of transcriptional fidelity during DNA-templated transcription elongation from RNA polymerase II promoter(GO:0001193) |
| 0.1 | 0.6 | GO:0009957 | epidermal cell fate specification(GO:0009957) |
| 0.0 | 0.6 | GO:0005978 | glycogen biosynthetic process(GO:0005978) |
| 0.0 | 0.3 | GO:0034035 | guanosine tetraphosphate metabolic process(GO:0015969) purine ribonucleoside bisphosphate metabolic process(GO:0034035) |
| 0.0 | 0.1 | GO:0002215 | defense response to nematode(GO:0002215) |
| 0.0 | 2.1 | GO:0010218 | response to far red light(GO:0010218) |
| 0.0 | 0.3 | GO:0044375 | regulation of peroxisome size(GO:0044375) |
| 0.0 | 0.1 | GO:0044259 | collagen metabolic process(GO:0032963) multicellular organism metabolic process(GO:0044236) multicellular organismal macromolecule metabolic process(GO:0044259) |
| 0.0 | 1.6 | GO:0010286 | heat acclimation(GO:0010286) |
| 0.0 | 0.3 | GO:0070973 | protein localization to endoplasmic reticulum exit site(GO:0070973) |
| 0.0 | 0.2 | GO:0009864 | induced systemic resistance, jasmonic acid mediated signaling pathway(GO:0009864) |
| 0.0 | 0.2 | GO:0010030 | positive regulation of seed germination(GO:0010030) |
| 0.0 | 0.2 | GO:0006265 | DNA topological change(GO:0006265) |
| 0.0 | 0.1 | GO:0010032 | meiotic chromosome condensation(GO:0010032) |
| 0.0 | 0.2 | GO:0048768 | root hair cell tip growth(GO:0048768) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 0.1 | GO:0005776 | autophagosome(GO:0005776) |
| 0.0 | 0.3 | GO:0031231 | integral component of peroxisomal membrane(GO:0005779) intrinsic component of peroxisomal membrane(GO:0031231) |
| 0.0 | 2.0 | GO:0000790 | nuclear chromatin(GO:0000790) |
| 0.0 | 0.3 | GO:0000419 | DNA-directed RNA polymerase V complex(GO:0000419) |
| 0.0 | 0.8 | GO:0010287 | plastoglobule(GO:0010287) |
| 0.0 | 0.5 | GO:0044452 | nucleolar part(GO:0044452) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.5 | 3.3 | GO:0019904 | protein domain specific binding(GO:0019904) |
| 0.2 | 0.6 | GO:0003844 | 1,4-alpha-glucan branching enzyme activity(GO:0003844) |
| 0.1 | 0.3 | GO:0000064 | L-ornithine transmembrane transporter activity(GO:0000064) azole transmembrane transporter activity(GO:1901474) |
| 0.1 | 0.6 | GO:0015193 | L-proline transmembrane transporter activity(GO:0015193) |
| 0.1 | 0.5 | GO:0001046 | core promoter sequence-specific DNA binding(GO:0001046) core promoter binding(GO:0001047) |
| 0.1 | 0.8 | GO:0004144 | diacylglycerol O-acyltransferase activity(GO:0004144) |
| 0.1 | 0.4 | GO:0008381 | mechanically-gated ion channel activity(GO:0008381) mechanically gated channel activity(GO:0022833) |
| 0.1 | 0.3 | GO:0005355 | glucose transmembrane transporter activity(GO:0005355) |
| 0.0 | 0.3 | GO:0008728 | GTP diphosphokinase activity(GO:0008728) |
| 0.0 | 0.6 | GO:0030674 | protein binding, bridging(GO:0030674) |
| 0.0 | 0.4 | GO:0009815 | 1-aminocyclopropane-1-carboxylate oxidase activity(GO:0009815) |
| 0.0 | 1.4 | GO:0000156 | phosphorelay response regulator activity(GO:0000156) |
| 0.0 | 0.2 | GO:0043995 | histone acetyltransferase activity (H4-K5 specific)(GO:0043995) |
| 0.0 | 0.6 | GO:1901981 | phosphatidylinositol phosphate binding(GO:1901981) |
| 0.0 | 0.5 | GO:0052716 | hydroquinone:oxygen oxidoreductase activity(GO:0052716) |
| 0.0 | 2.3 | GO:0000978 | RNA polymerase II core promoter proximal region sequence-specific DNA binding(GO:0000978) |
| 0.0 | 0.2 | GO:0061505 | DNA topoisomerase type II (ATP-hydrolyzing) activity(GO:0003918) DNA topoisomerase II activity(GO:0061505) |
| 0.0 | 0.1 | GO:0031177 | phosphopantetheine binding(GO:0031177) |
| 0.0 | 0.3 | GO:0031386 | protein tag(GO:0031386) |
| 0.0 | 0.1 | GO:0008574 | ATP-dependent microtubule motor activity, plus-end-directed(GO:0008574) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.2 | 1.4 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.0 | 0.2 | PID SMAD2 3NUCLEAR PATHWAY | Regulation of nuclear SMAD2/3 signaling |