GSE130291:vernalization in Arabidopsis thaliana
Gene Symbol | Gene ID | Gene Info |
---|---|---|
AT2G47070
|
AT2G47070 | squamosa promoter binding protein-like 1 |
Gene | Promoter | Pearson corr. coef. | P-value | Plot |
---|---|---|---|---|
SPL1 | arTal_v1_Chr2_+_19336653_19336695 | -0.70 | 5.3e-03 | Click! |
Promoter | Log-likelihood | Transcript | Gene | Gene Info |
---|---|---|---|---|
arTal_v1_Chr1_-_27569823_27569823 Show fit | 1.05 |
AT1G73330.1
|
drought-repressed 4 |
|
arTal_v1_Chr5_+_26772644_26772644 Show fit | 0.81 |
AT5G67080.1
|
mitogen-activated protein kinase kinase kinase 19 |
|
arTal_v1_Chr5_+_9200271_9200271 Show fit | 0.76 |
AT5G26260.1
|
TRAF-like family protein |
|
arTal_v1_Chr3_+_23182722_23182722 Show fit | 0.74 |
AT3G62680.1
|
proline-rich protein 3 |
|
arTal_v1_Chr1_+_1520278_1520278 Show fit | 0.70 |
AT1G05240.1
|
Peroxidase superfamily protein |
|
arTal_v1_Chr3_+_23266227_23266227 Show fit | 0.68 |
AT3G62950.1
|
Thioredoxin superfamily protein |
|
arTal_v1_Chr1_+_4276505_4276505 Show fit | 0.67 |
AT1G12560.1
|
expansin A7 |
|
arTal_v1_Chr3_-_7656053_7656053 Show fit | 0.66 |
AT3G21720.1
|
isocitrate lyase |
|
arTal_v1_Chr3_-_12451556_12451556 Show fit | 0.66 |
AT3G30775.2
AT3G30775.1 |
Methylenetetrahydrofolate reductase family protein |
|
arTal_v1_Chr4_+_14762819_14762819 Show fit | 0.64 |
AT4G30170.1
|
Peroxidase family protein |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 2.2 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
0.1 | 1.5 | GO:0019430 | removal of superoxide radicals(GO:0019430) cellular response to oxygen radical(GO:0071450) cellular response to superoxide(GO:0071451) |
0.2 | 1.3 | GO:0006567 | threonine catabolic process(GO:0006567) |
0.2 | 1.3 | GO:0031222 | arabinan catabolic process(GO:0031222) |
0.0 | 1.2 | GO:0010411 | xyloglucan metabolic process(GO:0010411) |
0.0 | 1.2 | GO:0009735 | response to cytokinin(GO:0009735) |
0.1 | 1.1 | GO:0010466 | negative regulation of peptidase activity(GO:0010466) regulation of peptidase activity(GO:0052547) |
0.0 | 1.0 | GO:0045490 | pectin catabolic process(GO:0045490) |
0.1 | 0.9 | GO:0016998 | cell wall macromolecule catabolic process(GO:0016998) |
0.0 | 0.9 | GO:0045168 | cell-cell signaling involved in cell fate commitment(GO:0045168) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 3.4 | GO:0031225 | anchored component of membrane(GO:0031225) |
0.0 | 2.0 | GO:0005887 | integral component of plasma membrane(GO:0005887) |
0.0 | 1.6 | GO:0005764 | lysosome(GO:0005764) |
0.1 | 0.8 | GO:0000795 | synaptonemal complex(GO:0000795) |
0.0 | 0.8 | GO:0012511 | monolayer-surrounded lipid storage body(GO:0012511) |
0.2 | 0.7 | GO:0009514 | glyoxysome(GO:0009514) |
0.0 | 0.6 | GO:0005811 | lipid particle(GO:0005811) |
0.1 | 0.4 | GO:0030062 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
0.0 | 0.4 | GO:0001401 | mitochondrial sorting and assembly machinery complex(GO:0001401) |
0.0 | 0.4 | GO:0000148 | 1,3-beta-D-glucan synthase complex(GO:0000148) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.0 | 1.5 | GO:0004190 | aspartic-type endopeptidase activity(GO:0004190) |
0.0 | 1.5 | GO:0004197 | cysteine-type endopeptidase activity(GO:0004197) |
0.3 | 1.3 | GO:0004793 | threonine aldolase activity(GO:0004793) L-allo-threonine aldolase activity(GO:0008732) |
0.1 | 1.3 | GO:0046556 | xylan 1,4-beta-xylosidase activity(GO:0009044) alpha-L-arabinofuranosidase activity(GO:0046556) |
0.1 | 1.2 | GO:0016721 | superoxide dismutase activity(GO:0004784) oxidoreductase activity, acting on superoxide radicals as acceptor(GO:0016721) |
0.0 | 1.2 | GO:0030414 | peptidase inhibitor activity(GO:0030414) |
0.1 | 1.0 | GO:0015145 | monosaccharide transmembrane transporter activity(GO:0015145) |
0.0 | 1.0 | GO:0015174 | basic amino acid transmembrane transporter activity(GO:0015174) |
0.0 | 1.0 | GO:0016762 | xyloglucan:xyloglucosyl transferase activity(GO:0016762) |
0.0 | 1.0 | GO:0003993 | acid phosphatase activity(GO:0003993) |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.6 | PID REG GR PATHWAY | Glucocorticoid receptor regulatory network |
0.1 | 0.3 | ST WNT BETA CATENIN PATHWAY | Wnt/beta-catenin Pathway |
0.1 | 0.3 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
Log-likelihood per target | Total log-likelihood | Term | Description |
---|---|---|---|
0.1 | 0.6 | REACTOME GLUCONEOGENESIS | Genes involved in Gluconeogenesis |
0.0 | 0.5 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
0.1 | 0.4 | REACTOME DOPAMINE NEUROTRANSMITTER RELEASE CYCLE | Genes involved in Dopamine Neurotransmitter Release Cycle |
0.0 | 0.4 | REACTOME ASPARAGINE N LINKED GLYCOSYLATION | Genes involved in Asparagine N-linked glycosylation |
0.0 | 0.3 | REACTOME INNATE IMMUNE SYSTEM | Genes involved in Innate Immune System |
0.0 | 0.2 | REACTOME TRANSCRIPTIONAL REGULATION OF WHITE ADIPOCYTE DIFFERENTIATION | Genes involved in Transcriptional Regulation of White Adipocyte Differentiation |
0.0 | 0.1 | REACTOME DEVELOPMENTAL BIOLOGY | Genes involved in Developmental Biology |