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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G46770
Z-value: 0.72
Transcription factors associated with AT2G46770
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G46770
|
AT2G46770 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| NST1 | arTal_v1_Chr2_-_19222916_19222916 | 0.20 | 4.9e-01 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_1629610_1629610 Show fit | 1.29 |
AT5G05500.1
|
Pollen Ole e 1 allergen and extensin family protein |
|
| arTal_v1_Chr4_+_15451988_15451988 Show fit | 1.20 |
AT4G31940.1
|
cytochrome P450, family 82, subfamily C, polypeptide 4 |
|
| arTal_v1_Chr1_-_10164452_10164452 Show fit | 1.10 |
AT1G29090.1
|
Cysteine proteinases superfamily protein |
|
| arTal_v1_Chr2_+_12004658_12004700 Show fit | 0.97 |
AT2G28160.1
AT2G28160.2 |
FER-like regulator of iron uptake |
|
| arTal_v1_Chr4_-_993039_993039 Show fit | 0.91 |
AT4G02270.1
|
root hair specific 13 |
|
| arTal_v1_Chr1_+_5872024_5872024 Show fit | 0.89 |
AT1G17180.1
|
glutathione S-transferase TAU 25 |
|
| arTal_v1_Chr5_-_18189523_18189523 Show fit | 0.89 |
AT5G45070.1
|
phloem protein 2-A8 |
|
| arTal_v1_Chr4_+_10707344_10707378 Show fit | 0.87 |
AT4G19690.2
AT4G19690.1 |
iron-regulated transporter 1 |
|
| arTal_v1_Chr4_-_14542565_14542565 Show fit | 0.85 |
AT4G29690.1
|
Alkaline-phosphatase-like family protein |
|
| arTal_v1_Chr4_-_7421828_7421828 Show fit | 0.82 |
AT4G12520.1
|
Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G46770
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 3.6 | GO:0010345 | suberin biosynthetic process(GO:0010345) |
| 0.1 | 2.7 | GO:0009828 | plant-type cell wall loosening(GO:0009828) |
| 0.0 | 2.6 | GO:0080147 | root hair cell development(GO:0080147) |
| 0.1 | 2.5 | GO:0055072 | iron ion homeostasis(GO:0055072) |
| 0.1 | 2.5 | GO:0045492 | xylan biosynthetic process(GO:0045492) |
| 0.1 | 2.1 | GO:0010143 | cutin biosynthetic process(GO:0010143) |
| 0.5 | 1.9 | GO:0015675 | nickel cation transport(GO:0015675) |
| 0.1 | 1.7 | GO:0009691 | cytokinin biosynthetic process(GO:0009691) |
| 0.0 | 1.7 | GO:0030641 | regulation of cellular pH(GO:0030641) regulation of intracellular pH(GO:0051453) |
| 0.0 | 1.7 | GO:0009631 | cold acclimation(GO:0009631) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 13.4 | GO:0005794 | Golgi apparatus(GO:0005794) |
| 0.0 | 7.5 | GO:0009505 | plant-type cell wall(GO:0009505) |
| 0.0 | 5.4 | GO:0046658 | anchored component of plasma membrane(GO:0046658) |
| 0.0 | 3.7 | GO:0031225 | anchored component of membrane(GO:0031225) |
| 0.0 | 2.7 | GO:0022627 | cytosolic small ribosomal subunit(GO:0022627) |
| 0.0 | 1.9 | GO:0000138 | Golgi trans cisterna(GO:0000138) |
| 0.0 | 1.4 | GO:0090406 | pollen tube(GO:0090406) |
| 0.0 | 1.4 | GO:0009705 | plant-type vacuole membrane(GO:0009705) |
| 0.0 | 1.3 | GO:0022625 | cytosolic large ribosomal subunit(GO:0022625) |
| 0.1 | 1.2 | GO:0031012 | extracellular matrix(GO:0031012) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.0 | 2.7 | GO:0009055 | electron carrier activity(GO:0009055) |
| 0.0 | 2.5 | GO:0003735 | structural constituent of ribosome(GO:0003735) |
| 0.0 | 2.4 | GO:0003924 | GTPase activity(GO:0003924) |
| 0.1 | 2.0 | GO:0008553 | hydrogen-exporting ATPase activity, phosphorylative mechanism(GO:0008553) |
| 0.1 | 1.9 | GO:0016157 | sucrose synthase activity(GO:0016157) |
| 0.1 | 1.8 | GO:0004805 | trehalose-phosphatase activity(GO:0004805) |
| 0.2 | 1.7 | GO:0090447 | glycerol-3-phosphate 2-O-acyltransferase activity(GO:0090447) |
| 0.1 | 1.7 | GO:0015086 | cadmium ion transmembrane transporter activity(GO:0015086) |
| 0.1 | 1.7 | GO:0008810 | cellulase activity(GO:0008810) |
| 0.1 | 1.6 | GO:0004725 | protein tyrosine phosphatase activity(GO:0004725) |
Gene overrepresentation in curated gene sets: canonical pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | NABA SECRETED FACTORS | Genes encoding secreted soluble factors |
| 0.1 | 0.5 | PID MTOR 4PATHWAY | mTOR signaling pathway |
| 0.1 | 0.5 | PID CXCR4 PATHWAY | CXCR4-mediated signaling events |
| 0.1 | 0.4 | PID IL12 2PATHWAY | IL12-mediated signaling events |
| 0.1 | 0.4 | PID HIF2PATHWAY | HIF-2-alpha transcription factor network |
| 0.1 | 0.4 | NABA ECM GLYCOPROTEINS | Genes encoding structural ECM glycoproteins |
| 0.1 | 0.3 | PID IL8 CXCR2 PATHWAY | IL8- and CXCR2-mediated signaling events |
| 0.1 | 0.3 | PID HDAC CLASSII PATHWAY | Signaling events mediated by HDAC Class II |
| 0.1 | 0.2 | PID ERA GENOMIC PATHWAY | Validated nuclear estrogen receptor alpha network |
| 0.1 | 0.2 | PID HIV NEF PATHWAY | HIV-1 Nef: Negative effector of Fas and TNF-alpha |
Gene overrepresentation in curated gene sets: REACTOME pathways category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.2 | REACTOME CHEMOKINE RECEPTORS BIND CHEMOKINES | Genes involved in Chemokine receptors bind chemokines |
| 0.3 | 0.8 | REACTOME GLYCOSPHINGOLIPID METABOLISM | Genes involved in Glycosphingolipid metabolism |
| 0.2 | 0.7 | REACTOME INTEGRATION OF ENERGY METABOLISM | Genes involved in Integration of energy metabolism |
| 0.0 | 0.7 | REACTOME FACTORS INVOLVED IN MEGAKARYOCYTE DEVELOPMENT AND PLATELET PRODUCTION | Genes involved in Factors involved in megakaryocyte development and platelet production |
| 0.2 | 0.5 | REACTOME DEADENYLATION OF MRNA | Genes involved in Deadenylation of mRNA |
| 0.1 | 0.4 | REACTOME INTRINSIC PATHWAY FOR APOPTOSIS | Genes involved in Intrinsic Pathway for Apoptosis |
| 0.1 | 0.4 | REACTOME METABOLISM OF NUCLEOTIDES | Genes involved in Metabolism of nucleotides |
| 0.1 | 0.4 | REACTOME MHC CLASS II ANTIGEN PRESENTATION | Genes involved in MHC class II antigen presentation |
| 0.0 | 0.4 | REACTOME 3 UTR MEDIATED TRANSLATIONAL REGULATION | Genes involved in 3' -UTR-mediated translational regulation |
| 0.1 | 0.3 | REACTOME P75 NTR RECEPTOR MEDIATED SIGNALLING | Genes involved in p75 NTR receptor-mediated signalling |