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GSE130291:vernalization in Arabidopsis thaliana
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Results for AT2G45680
Z-value: 0.53
Transcription factors associated with AT2G45680
| Gene Symbol | Gene ID | Gene Info |
|---|---|---|
|
AT2G45680
|
AT2G45680 | TCP family transcription factor |
Activity-expression correlation:
| Gene | Promoter | Pearson corr. coef. | P-value | Plot |
|---|---|---|---|---|
| TCP9 | arTal_v1_Chr2_-_18821889_18821889 | -0.62 | 1.7e-02 | Click! |
| Promoter | Log-likelihood | Transcript | Gene | Gene Info |
|---|---|---|---|---|
| arTal_v1_Chr5_+_6833564_6833659 Show fit | 1.13 |
AT5G20250.2
AT5G20250.1 AT5G20250.4 AT5G20250.3 |
Raffinose synthase family protein |
|
| arTal_v1_Chr5_-_8181107_8181107 Show fit | 1.00 |
AT5G24155.2
AT5G24155.3 AT5G24155.1 |
FAD/NAD(P)-binding oxidoreductase family protein |
|
| arTal_v1_Chr1_+_30241452_30241452 Show fit | 0.97 |
AT1G80440.1
|
Galactose oxidase/kelch repeat superfamily protein |
|
| arTal_v1_Chr4_-_17672353_17672353 Show fit | 0.86 |
AT4G37610.1
|
BTB and TAZ domain protein 5 |
|
| arTal_v1_Chr4_-_3065294_3065294 Show fit | 0.78 |
AT4G06477.1
|
|
|
| arTal_v1_Chr4_+_13391293_13391344 Show fit | 0.77 |
AT4G26530.2
AT4G26530.1 |
Aldolase superfamily protein |
|
| arTal_v1_Chr4_+_13390754_13390754 Show fit | 0.76 |
AT4G26530.3
|
Aldolase superfamily protein |
|
| arTal_v1_Chr2_+_3618058_3618058 Show fit | 0.71 |
AT2G08986.1
|
hypothetical protein |
|
| arTal_v1_Chr4_-_18459257_18459257 Show fit | 0.66 |
AT4G39780.1
|
Integrase-type DNA-binding superfamily protein |
|
| arTal_v1_Chr1_+_7493213_7493343 Show fit | 0.54 |
AT1G21400.3
AT1G21400.2 AT1G21400.5 AT1G21400.4 AT1G21400.6 AT1G21400.1 |
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein |
Network of associatons between targets according to the STRING database.
First level regulatory network of AT2G45680
Gene Ontology Analysis
Gene overrepresentation in biological process category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | GO:0030388 | fructose 1,6-bisphosphate metabolic process(GO:0030388) |
| 0.0 | 1.0 | GO:0016126 | sterol biosynthetic process(GO:0016126) |
| 0.2 | 0.9 | GO:1904589 | regulation of protein import(GO:1904589) |
| 0.0 | 0.9 | GO:0042542 | response to hydrogen peroxide(GO:0042542) |
| 0.1 | 0.8 | GO:0006535 | cysteine biosynthetic process from serine(GO:0006535) |
| 0.1 | 0.5 | GO:0043617 | cellular response to sucrose starvation(GO:0043617) |
| 0.0 | 0.5 | GO:0048235 | pollen sperm cell differentiation(GO:0048235) |
| 0.0 | 0.4 | GO:0070413 | trehalose metabolism in response to stress(GO:0070413) |
| 0.0 | 0.4 | GO:0061572 | actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572) |
| 0.0 | 0.2 | GO:0005978 | glycogen biosynthetic process(GO:0005978) amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896) |
Gene overrepresentation in cellular component category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 0.5 | GO:0005947 | mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062) |
| 0.0 | 0.4 | GO:0005884 | actin filament(GO:0005884) |
| 0.0 | 0.4 | GO:0030125 | clathrin vesicle coat(GO:0030125) |
Gene overrepresentation in molecular function category:
| Log-likelihood per target | Total log-likelihood | Term | Description |
|---|---|---|---|
| 0.1 | 1.5 | GO:0004332 | fructose-bisphosphate aldolase activity(GO:0004332) |
| 0.2 | 1.1 | GO:0047274 | galactinol-sucrose galactosyltransferase activity(GO:0047274) |
| 0.1 | 1.0 | GO:0004506 | squalene monooxygenase activity(GO:0004506) |
| 0.1 | 0.8 | GO:0004124 | cysteine synthase activity(GO:0004124) |
| 0.1 | 0.5 | GO:0003863 | 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863) |
| 0.1 | 0.4 | GO:0070696 | transmembrane receptor protein serine/threonine kinase binding(GO:0070696) |
| 0.0 | 0.4 | GO:0003825 | alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825) |
| 0.0 | 0.4 | GO:0030276 | clathrin binding(GO:0030276) |
| 0.1 | 0.3 | GO:0047209 | coniferyl-alcohol glucosyltransferase activity(GO:0047209) |
| 0.0 | 0.3 | GO:0008106 | alcohol dehydrogenase (NADP+) activity(GO:0008106) |