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GSE130291:vernalization in Arabidopsis thaliana

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Results for AT2G45680

Z-value: 0.53

Transcription factors associated with AT2G45680

Gene Symbol Gene ID Gene Info
AT2G45680 TCP family transcription factor

Activity-expression correlation:

GenePromoterPearson corr. coef.P-valuePlot
TCP9arTal_v1_Chr2_-_18821889_18821889-0.621.7e-02Click!

Activity profile of AT2G45680 motif

Sorted Z-values of AT2G45680 motif

Promoter Log-likelihood Transcript Gene Gene Info
Chr5_+_6833564 1.13 AT5G20250.2
AT5G20250.1
AT5G20250.4
AT5G20250.3
Raffinose synthase family protein
Chr5_-_8181107 1.00 AT5G24155.2
AT5G24155.3
AT5G24155.1
FAD/NAD(P)-binding oxidoreductase family protein
Chr1_+_30241452 0.97 AT1G80440.1
Galactose oxidase/kelch repeat superfamily protein
Chr4_-_17672353 0.86 AT4G37610.1
BTB and TAZ domain protein 5
Chr4_-_3065294 0.78 AT4G06477.1

Chr4_+_13391293 0.77 AT4G26530.2
AT4G26530.1
Aldolase superfamily protein
Chr4_+_13390754 0.76 AT4G26530.3
Aldolase superfamily protein
Chr2_+_3618058 0.71 AT2G08986.1
hypothetical protein
Chr4_-_18459257 0.66 AT4G39780.1
Integrase-type DNA-binding superfamily protein
Chr1_+_7493213 0.54 AT1G21400.3
AT1G21400.2
AT1G21400.5
AT1G21400.4
AT1G21400.6
AT1G21400.1
Thiamin diphosphate-binding fold (THDP-binding) superfamily protein
Chr5_+_16727530 0.52 AT5G41790.1
COP1-interactive protein 1
Chr2_-_17648945 0.48 AT2G42380.1
AT2G42380.4
AT2G42380.3
AT2G42380.2
AT2G42380.5
Basic-leucine zipper (bZIP) transcription factor family protein
Chr2_+_8108898 0.44 AT2G18700.1
trehalose phosphatase/synthase 11
Chr1_+_3031046 0.43 AT1G09390.1
GDSL-like Lipase/Acylhydrolase superfamily protein
Chr3_+_7963855 0.42 AT3G22460.2
O-acetylserine (thiol) lyase (OAS-TL) isoform A2
Chr5_-_7250770 0.42 AT5G21940.1
hybrid signal transduction histidine kinase M-like protein
Chr3_+_7964127 0.42 AT3G22460.1
O-acetylserine (thiol) lyase (OAS-TL) isoform A2
Chr1_-_575085 0.41 AT1G02660.1
alpha/beta-Hydrolases superfamily protein
Chr1_+_23953099 0.38 AT1G64500.1
Glutaredoxin family protein
Chr4_-_3950602 0.38 AT4G06700.1

Chr3_+_229075 0.38 AT3G01600.1
NAC domain containing protein 44
Chr5_+_16725753 0.37 AT5G41790.2
COP1-interactive protein 1
Chr3_-_1257017 0.37 AT3G04620.1
Alba DNA/RNA-binding protein
Chr3_+_4510965 0.36 AT3G13750.1
beta galactosidase 1
Chr1_-_130570 0.33 AT1G01320.1
AT1G01320.3
AT1G01320.2
Tetratricopeptide repeat (TPR)-like superfamily protein
Chr5_+_26625049 0.32 AT5G66690.1
UDP-Glycosyltransferase superfamily protein
Chr5_-_11721564 0.32 AT5G31804.1

Chr3_+_1035238 0.31 AT3G04000.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr4_-_13998604 0.30 AT4G28240.1
Wound-responsive family protein
Chr1_+_4260783 0.30 AT1G12490.1
F-box associated ubiquitination effector family protein
Chr4_-_13406109 0.28 AT4G26555.2
AT4G26555.3
AT4G26555.1
FKBP-like peptidyl-prolyl cis-trans isomerase family protein
Chr4_-_11201106 0.27 AT4G20930.2
AT4G20930.1
6-phosphogluconate dehydrogenase family protein
Chr3_+_13601800 0.26 AT3G33058.1

Chr5_-_974178 0.26 AT5G03720.2
AT5G03720.1
heat shock transcription factor A3
Chr1_-_3627082 0.25 AT1G10880.1
core-2/I-branching beta-1,6-n-acetylglucosaminyltransferase family protein
Chr3_-_14172161 0.24 AT3G41345.1

Chr3_+_2354640 0.22 AT3G07360.1
AT3G07360.4
AT3G07360.3
AT3G07360.5
AT3G07360.7
AT3G07360.8
AT3G07360.6
AT3G07360.2
plant U-box 9
Chr1_+_1762145 0.22 AT1G05835.1
PHD finger protein
Chr5_+_931762 0.21 AT5G03650.1
starch branching enzyme 2.2
Chr3_+_2355174 0.21 AT3G07360.10
AT3G07360.9
plant U-box 9
Chr3_-_1858946 0.21 AT3G06140.1
RING/U-box superfamily protein
Chr2_-_19440355 0.20 AT2G47370.2
AT2G47370.1
Calcium-dependent phosphotriesterase superfamily protein
Chr5_+_5718498 0.20 AT5G17350.1
hypothetical protein
Chr1_-_23807159 0.19 AT1G64140.1
WRKY transcription factor
Chr4_+_1806588 0.19 AT4G03860.1

Chr3_-_6343178 0.19 AT3G18485.1
iaa-leucine resistant 2
Chr4_-_16942060 0.19 AT4G35750.1
SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein
Chr2_+_5463578 0.19 AT2G13180.1

Chr5_-_11184514 0.19 AT5G29550.1

Chr1_+_12314904 0.19 AT1G33910.1
P-loop containing nucleoside triphosphate hydrolases superfamily protein
Chr4_-_18141726 0.19 AT4G38900.3
Basic-leucine zipper (bZIP) transcription factor family protein
Chr2_+_18804190 0.18 AT2G45650.1
AGAMOUS-like 6
Chr1_+_16151095 0.18 AT1G43005.1
F-box/associated interaction domain protein
Chr5_+_12888194 0.18 AT5G34431.1

Chr4_-_18141950 0.17 AT4G38900.1
AT4G38900.2
Basic-leucine zipper (bZIP) transcription factor family protein
Chr2_-_19297858 0.17 AT2G46970.1
phytochrome interacting factor 3-like 1
Chr2_+_12119285 0.17 AT2G28355.1
low-molecular-weight cysteine-rich 5
Chr5_-_22410974 0.17 AT5G55250.1
IAA carboxylmethyltransferase 1
Chr3_-_12737948 0.16 AT3G31367.1

Chr5_+_25113948 0.16 AT5G62570.4
AT5G62570.1
AT5G62570.3
Calmodulin binding protein-like protein
Chr5_-_11802224 0.16 AT5G32053.1

Chr5_+_17783172 0.16 AT5G44180.2
AT5G44180.3
Homeodomain-like transcriptional regulator
Chr3_-_16394579 0.16 AT3G44910.1
cation/H+ exchanger 12
Chr5_+_2616134 0.16 AT5G08139.1
RING/U-box superfamily protein
Chr5_+_2616287 0.16 AT5G08139.2
RING/U-box superfamily protein
Chr5_+_25114421 0.16 AT5G62570.2
Calmodulin binding protein-like protein
Chr3_+_6510982 0.15 AT3G18890.1
NAD(P)-binding Rossmann-fold superfamily protein
Chr5_-_3595003 0.15 AT5G11260.2
AT5G11260.1
Basic-leucine zipper (bZIP) transcription factor family protein
Chr3_-_14470707 0.15 AT3G42316.1

Chr1_+_14188824 0.15 AT1G37170.1

Chr2_-_18655444 0.15 AT2G45230.1

Chr5_+_14750318 0.15 AT5G37250.2
AT5G37250.1
RING/U-box superfamily protein
Chr2_+_13515199 0.15 AT2G31780.1
RING/U-box superfamily protein
Chr4_+_17844656 0.14 AT4G37950.2
Rhamnogalacturonate lyase family protein
Chr3_-_13817171 0.14 AT3G33080.1

Chr3_-_2137641 0.14 AT3G06770.2
Pectin lyase-like superfamily protein
Chr2_+_3484627 0.14 AT2G07806.3
hypothetical protein
Chr2_-_19297529 0.14 AT2G46970.2
AT2G46970.3
phytochrome interacting factor 3-like 1
Chr3_+_11737049 0.14 AT3G29830.2
AT3G29830.1
F-box/RNI-like superfamily protein
Chr5_+_17782428 0.14 AT5G44180.1
Homeodomain-like transcriptional regulator
Chr2_+_18718348 0.14 AT2G45420.1
LOB domain-containing protein 18
Chr4_+_17844361 0.14 AT4G37950.1
Rhamnogalacturonate lyase family protein
Chr3_-_12175434 0.14 AT3G30582.1

Chr1_-_30199537 0.13 AT1G80330.1
gibberellin 3-oxidase 4
Chr5_-_22410766 0.13 AT5G55250.2
IAA carboxylmethyltransferase 1
Chr1_-_8882100 0.13 AT1G25330.1
basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Chr4_-_3958339 0.13 AT4G06702.1

Chr2_-_8795980 0.13 AT2G20380.1
Galactose oxidase/kelch repeat superfamily protein
Chr1_-_26894246 0.13 AT1G71360.2
Galactose-binding protein
Chr1_+_14334140 0.13 AT1G38185.1

Chr2_-_5158744 0.13 AT2G12640.1

Chr5_-_14680737 0.13 AT5G37125.1

Chr2_+_3484830 0.12 AT2G07806.1
AT2G07806.2
hypothetical protein
Chr3_-_17136152 0.12 AT3G46540.2
ENTH/VHS family protein
Chr1_+_14248948 0.12 AT1G37669.1

Chr3_-_17135716 0.12 AT3G46540.1
ENTH/VHS family protein
Chr5_-_10793514 0.12 AT5G28765.1

Chr1_+_8592078 0.12 AT1G24256.1
hypothetical protein
Chr3_-_2137012 0.12 AT3G06770.1
AT3G06770.5
Pectin lyase-like superfamily protein
Chr5_-_9382331 0.12 AT5G26590.1

Chr3_-_2137280 0.12 AT3G06770.4
AT3G06770.3
Pectin lyase-like superfamily protein
Chr5_+_11977548 0.11 AT5G32345.1

Chr2_-_18422839 0.11 AT2G44660.1
ALG6, ALG8 glycosyltransferase family
Chr3_-_17135205 0.11 AT3G46540.3
ENTH/VHS family protein
Chr3_-_16035273 0.10 AT3G44370.1
AT3G44370.2
Membrane insertion protein, OxaA/YidC with tetratricopeptide repeat domain-containing protein
Chr1_+_28313379 0.10 AT1G75440.1
ubiquitin-conjugating enzyme 16
Chr3_-_13524114 0.10 AT3G32975.1

Chr2_-_3561620 0.10 AT2G07791.1

Chr3_+_15219454 0.10 AT3G43260.1
deoxyhypusine protein
Chr1_+_11959287 0.10 AT1G33010.1
F-box and associated interaction domains-containing protein
Chr5_-_22326418 0.10 AT5G55020.1
myb domain protein 120
Chr4_+_2896376 0.10 AT4G05591.1

Chr4_-_3052774 0.10 AT4G06474.1

Chr4_+_4960143 0.10 AT4G08078.1

Chr1_+_11035992 0.10 AT1G30950.1
F-box family protein
Chr5_+_13779115 0.10 AT5G35602.1

Chr4_+_9290898 0.10 AT4G16480.3
AT4G16480.1
inositol transporter 4
Chr4_+_2717977 0.09 AT4G05320.2
AT4G05320.6
polyubiquitin 10
Chr4_+_2718170 0.09 AT4G05320.1
AT4G05320.5
AT4G05320.7
AT4G05320.8
AT4G05320.3
AT4G05320.4
polyubiquitin 10
Chr2_+_14106118 0.09 AT2G33280.3
Major facilitator superfamily protein
Chr3_-_13744449 0.09 AT3G33076.1

Chr3_+_19607897 0.09 AT3G52890.2
AT3G52890.1
AT3G52890.3
AT3G52890.4
KCBP-interacting protein kinase
Chr1_+_16666418 0.09 AT1G43940.1

Chr3_+_13803173 0.09 AT3G33069.1

Chr4_-_4315510 0.09 AT4G07515.1
ECA1 gametogenesis family protein (DUF784)
Chr2_+_2639598 0.09 AT2G06600.1

Chr1_-_12467841 0.09 AT1G34230.1

Chr3_+_13675144 0.09 AT3G33084.1

Chr1_+_3781235 0.09 AT1G11265.1

Chr4_+_9290403 0.08 AT4G16480.2
inositol transporter 4
Chr5_+_17432645 0.08 AT5G43405.1

Chr5_+_10683218 0.08 AT5G28660.1
NHL domain-containing protein
Chr4_-_6266245 0.08 AT4G10010.1
Protein kinase superfamily protein
Chr5_-_3334913 0.08 AT5G10550.1
global transcription factor group E2
Chr3_-_13833069 0.08 AT3G33100.1

Chr3_+_14645107 0.08 AT3G42540.1

Chr3_+_14895823 0.08 AT3G42794.1

Chr4_+_10901103 0.08 AT4G20180.1

Chr2_-_16024854 0.08 AT2G38255.1
hypothetical protein (DUF239)
Chr2_+_2633129 0.08 AT2G06590.1

Chr4_-_5303314 0.08 AT4G08370.1
Proline-rich extensin-like family protein
Chr1_-_9887478 0.08 AT1G28280.2
AT1G28280.1
VQ motif-containing protein
Chr3_-_13520041 0.08 AT3G32970.1

Chr4_+_744804 0.07 AT4G01720.1
WRKY family transcription factor
Chr3_-_15150916 0.07 AT3G43153.1
cAMP-dependent protein kinase inhibitor-like protein
Chr3_-_15717829 0.07 AT3G43863.1

Chr2_-_3593227 0.07 AT2G07780.1

Chr4_-_17837584 0.07 AT4G37940.2
AGAMOUS-like 21
Chr4_-_6266938 0.07 AT4G10010.2
Protein kinase superfamily protein
Chr3_+_6024795 0.07 AT3G17611.3
AT3G17611.1
AT3G17611.2
RHOMBOID-like protein 14
Chr1_-_24714843 0.07 AT1G66290.1
F-box/RNI-like superfamily protein
Chr3_-_5285767 0.07 AT3G15602.1

Chr3_+_18200587 0.06 AT3G49110.1
peroxidase CA
Chr5_+_10358184 0.06 AT5G28410.1
hypothetical protein
Chr2_-_17806073 0.06 AT2G42790.1
citrate synthase 3
Chr5_-_12841837 0.06 AT5G34412.1

Chr2_+_2667277 0.06 AT2G06680.1

Chr2_+_749881 0.06 AT2G02690.2
AT2G02690.1
Cysteine/Histidine-rich C1 domain family protein
Chr2_-_19114173 0.06 AT2G46550.3
AT2G46550.1
AT2G46550.2
transmembrane protein
Chr2_-_16033169 0.06 AT2G38270.1
CAX-interacting protein 2
Chr1_+_13148592 0.06 AT1G35614.1
hypothetical protein
Chr4_-_8711526 0.05 AT4G15250.1
B-box type zinc finger protein with CCT domain-containing protein
Chr3_+_13871109 0.05 AT3G33106.1

Chr2_+_14105896 0.05 AT2G33280.2
AT2G33280.1
Major facilitator superfamily protein
Chr3_+_11695756 0.05 AT3G29791.1
hypothetical protein
Chr3_-_14398293 0.05 AT3G42240.1

Chr4_+_9558962 0.05 AT4G16990.10
disease resistance protein (TIR-NBS class)
Chr5_+_24996129 0.04 AT5G62230.2
AT5G62230.1
ERECTA-like 1
Chr3_+_14799890 0.04 AT3G42716.1

Chr1_-_26894856 0.04 AT1G71360.1
Galactose-binding protein
Chr3_+_7912905 0.04 AT3G22380.2
AT3G22380.3
AT3G22380.1
time for coffee
Chr4_-_4193016 0.04 AT4G07380.1
hypothetical protein
Chr5_-_18518909 0.04 AT5G45650.2
AT5G45650.1
subtilase family protein
Chr5_+_11739277 0.04 AT5G31821.1

Chr5_+_6904672 0.03 AT5G20430.1
Mob1/phocein family protein
Chr4_-_17838621 0.03 AT4G37940.4
AGAMOUS-like 21
Chr1_-_22183143 0.03 AT1G60150.1

Chr3_+_11931287 0.03 AT3G30320.1
hypothetical protein
Chr5_-_16033551 0.03 AT5G40050.1
F-box/FBD-like domains containing protein
Chr2_+_4656594 0.03 AT2G11610.1

Chr3_-_5132330 0.03 AT3G15220.1
Protein kinase superfamily protein
Chr2_-_257568 0.02 AT2G01570.1
GRAS family transcription factor family protein
Chr2_+_17195292 0.02 AT2G41231.2
AT2G41231.1
transmembrane protein
Chr5_+_661936 0.02 AT5G02880.2
AT5G02880.1
ubiquitin-protein ligase 4
Chr3_-_538126 0.02 AT3G02550.1
LOB domain-containing protein 41
Chr5_+_12023371 0.02 AT5G32410.2

Chr5_-_6182706 0.02 AT5G18590.2
AT5G18590.1
Galactose oxidase/kelch repeat superfamily protein
Chr5_+_13543157 0.02 AT5G35336.1

Chr2_+_17966251 0.01 AT2G43230.2
AT2G43230.1
Protein kinase superfamily protein
Chr5_-_19909452 0.01 AT5G49120.1
DUF581 family protein, putative (DUF581)
Chr2_+_1025 0.01 AT2G01008.1
maternal effect embryo arrest protein
Chr2_-_466724 0.01 AT2G01990.1
XRI1-like protein
Chr2_-_466955 0.01 AT2G01990.2
XRI1-like protein
Chr1_-_23595775 0.00 AT1G63640.2
AT1G63640.4
AT1G63640.5
AT1G63640.3
AT1G63640.1
P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein
Chr5_+_4593198 0.00 AT5G14230.2
ankyrin

Network of associatons between targets according to the STRING database.

First level regulatory network of AT2G45680

PNG image of the network

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Gene Ontology Analysis

Gene overrepresentation in biological process category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 0.9 GO:1904589 regulation of protein import(GO:1904589)
0.1 0.5 GO:0043617 cellular response to sucrose starvation(GO:0043617)
0.1 1.5 GO:0030388 fructose 1,6-bisphosphate metabolic process(GO:0030388)
0.1 0.8 GO:0006535 cysteine biosynthetic process from serine(GO:0006535)
0.0 0.1 GO:0090030 regulation of brassinosteroid biosynthetic process(GO:0010422) regulation of steroid metabolic process(GO:0019218) regulation of steroid biosynthetic process(GO:0050810) regulation of steroid hormone biosynthetic process(GO:0090030)
0.0 0.4 GO:0070413 trehalose metabolism in response to stress(GO:0070413)
0.0 1.0 GO:0016126 sterol biosynthetic process(GO:0016126)
0.0 0.4 GO:0061572 actin filament bundle assembly(GO:0051017) actin filament bundle organization(GO:0061572)
0.0 0.2 GO:0005978 glycogen biosynthetic process(GO:0005978) amylopectin biosynthetic process(GO:0010021) amylopectin metabolic process(GO:2000896)
0.0 0.2 GO:0001709 cell fate determination(GO:0001709)
0.0 0.2 GO:0031539 positive regulation of anthocyanin metabolic process(GO:0031539)
0.0 0.9 GO:0042542 response to hydrogen peroxide(GO:0042542)
0.0 0.5 GO:0048235 pollen sperm cell differentiation(GO:0048235)

Gene overrepresentation in cellular component category:

Log-likelihood per target  Total log-likelihood Term Description
0.1 0.5 GO:0005947 mitochondrial alpha-ketoglutarate dehydrogenase complex(GO:0005947) mitochondrial tricarboxylic acid cycle enzyme complex(GO:0030062)
0.0 0.4 GO:0005884 actin filament(GO:0005884)
0.0 0.4 GO:0030125 clathrin vesicle coat(GO:0030125)

Gene overrepresentation in molecular function category:

Log-likelihood per target  Total log-likelihood Term Description
0.2 1.1 GO:0047274 galactinol-sucrose galactosyltransferase activity(GO:0047274)
0.1 1.0 GO:0004506 squalene monooxygenase activity(GO:0004506)
0.1 1.5 GO:0004332 fructose-bisphosphate aldolase activity(GO:0004332)
0.1 0.3 GO:0047209 coniferyl-alcohol glucosyltransferase activity(GO:0047209)
0.1 0.5 GO:0003863 3-methyl-2-oxobutanoate dehydrogenase (2-methylpropanoyl-transferring) activity(GO:0003863)
0.1 0.2 GO:0003844 1,4-alpha-glucan branching enzyme activity(GO:0003844)
0.1 0.8 GO:0004124 cysteine synthase activity(GO:0004124)
0.1 0.4 GO:0070696 transmembrane receptor protein serine/threonine kinase binding(GO:0070696)
0.0 0.2 GO:0005366 myo-inositol:proton symporter activity(GO:0005366)
0.0 0.1 GO:0016707 gibberellin 3-beta-dioxygenase activity(GO:0016707)
0.0 0.4 GO:0003825 alpha,alpha-trehalose-phosphate synthase (UDP-forming) activity(GO:0003825)
0.0 0.3 GO:0008106 alcohol dehydrogenase (NADP+) activity(GO:0008106)
0.0 0.4 GO:0030276 clathrin binding(GO:0030276)
0.0 0.1 GO:0004108 citrate (Si)-synthase activity(GO:0004108) citrate synthase activity(GO:0036440)